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Items: 16

1.

Whole Genome Linkage Disequilibrium and Effective Population Size in a Coho Salmon (Oncorhynchus kisutch) Breeding Population Using a High-Density SNP Array.

Barría A, Christensen KA, Yoshida G, Jedlicki A, Leong JS, Rondeau EB, Lhorente JP, Koop BF, Davidson WS, Yáñez JM.

Front Genet. 2019 May 22;10:498. doi: 10.3389/fgene.2019.00498. eCollection 2019.

2.

Effect of triploidy on liver gene expression in coho salmon (Oncorhynchus kisutch) under different metabolic states.

Christensen KA, Sakhrani D, Rondeau EB, Richards J, Koop BF, Devlin RH.

BMC Genomics. 2019 May 3;20(1):336. doi: 10.1186/s12864-019-5655-8.

3.

Design and characterization of an 87k SNP genotyping array for Arctic charr (Salvelinus alpinus).

Nugent CM, Leong JS, Christensen KA, Rondeau EB, Brachmann MK, Easton AA, Ouellet-Fagg CL, Crown MTT, Davidson WS, Koop BF, Danzmann RG, Ferguson MM.

PLoS One. 2019 Apr 5;14(4):e0215008. doi: 10.1371/journal.pone.0215008. eCollection 2019.

4.

A genetic linkage map for the salmon louse (Lepeophtheirus salmonis): evidence for high male:female and inter-familial recombination rate differences.

Danzmann RG, Norman JD, Rondeau EB, Messmer AM, Kent MP, Lien S, Igboeli O, Fast MD, Koop BF.

Mol Genet Genomics. 2019 Apr;294(2):343-363. doi: 10.1007/s00438-018-1513-7. Epub 2018 Nov 20.

PMID:
30460550
5.

The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly.

Christensen KA, Rondeau EB, Minkley DR, Leong JS, Nugent CM, Danzmann RG, Ferguson MM, Stadnik A, Devlin RH, Muzzerall R, Edwards M, Davidson WS, Koop BF.

PLoS One. 2018 Sep 13;13(9):e0204076. doi: 10.1371/journal.pone.0204076. eCollection 2018.

6.

Regulatory processes that control haploid expression of salmon sperm mRNAs.

von Schalburg KR, Rondeau EB, Leong JS, Davidson WS, Koop BF.

BMC Res Notes. 2018 Sep 3;11(1):639. doi: 10.1186/s13104-018-3749-z.

7.

A 200K SNP chip reveals a novel Pacific salmon louse genotype linked to differential efficacy of emamectin benzoate.

Messmer AM, Leong JS, Rondeau EB, Mueller A, Despins CA, Minkley DR, Kent MP, Lien S, Boyce B, Morrison D, Fast MD, Norman JD, Danzmann RG, Koop BF.

Mar Genomics. 2018 Jul;40:45-57. doi: 10.1016/j.margen.2018.03.005. Epub 2018 Apr 16.

8.

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome.

Christensen KA, Leong JS, Sakhrani D, Biagi CA, Minkley DR, Withler RE, Rondeau EB, Koop BF, Devlin RH.

PLoS One. 2018 Apr 5;13(4):e0195461. doi: 10.1371/journal.pone.0195461. eCollection 2018.

9.

Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon.

Le Luyer J, Laporte M, Beacham TD, Kaukinen KH, Withler RE, Leong JS, Rondeau EB, Koop BF, Bernatchez L.

Proc Natl Acad Sci U S A. 2017 Dec 5;114(49):12964-12969. doi: 10.1073/pnas.1711229114. Epub 2017 Nov 21.

10.

Subcellular localization and characterization of estrogenic pathway regulators and mediators in Atlantic salmon spermatozoal cells.

von Schalburg KR, Gowen BE, Leong JS, Rondeau EB, Davidson WS, Koop BF.

Histochem Cell Biol. 2018 Jan;149(1):75-96. doi: 10.1007/s00418-017-1611-3. Epub 2017 Oct 5.

PMID:
28983690
11.

A PCR assay detects a male-specific duplicated copy of Anti-Müllerian hormone (amh) in the lingcod (Ophiodon elongatus).

Rondeau EB, Laurie CV, Johnson SC, Koop BF.

BMC Res Notes. 2016 Apr 22;9:230. doi: 10.1186/s13104-016-2030-6.

12.

The Atlantic salmon genome provides insights into rediploidization.

Lien S, Koop BF, Sandve SR, Miller JR, Kent MP, Nome T, Hvidsten TR, Leong JS, Minkley DR, Zimin A, Grammes F, Grove H, Gjuvsland A, Walenz B, Hermansen RA, von Schalburg K, Rondeau EB, Di Genova A, Samy JK, Olav Vik J, Vigeland MD, Caler L, Grimholt U, Jentoft S, Våge DI, de Jong P, Moen T, Baranski M, Palti Y, Smith DR, Yorke JA, Nederbragt AJ, Tooming-Klunderud A, Jakobsen KS, Jiang X, Fan D, Hu Y, Liberles DA, Vidal R, Iturra P, Jones SJ, Jonassen I, Maass A, Omholt SW, Davidson WS.

Nature. 2016 May 12;533(7602):200-5. doi: 10.1038/nature17164. Epub 2016 Apr 18.

PMID:
27088604
13.

The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei.

Rondeau EB, Minkley DR, Leong JS, Messmer AM, Jantzen JR, von Schalburg KR, Lemon C, Bird NH, Koop BF.

PLoS One. 2014 Jul 28;9(7):e102089. doi: 10.1371/journal.pone.0102089. eCollection 2014.

14.

Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene.

Rondeau EB, Messmer AM, Sanderson DS, Jantzen SG, von Schalburg KR, Minkley DR, Leong JS, Macdonald GM, Davidsen AE, Parker WA, Mazzola RS, Campbell B, Koop BF.

BMC Genomics. 2013 Jul 6;14:452. doi: 10.1186/1471-2164-14-452.

15.

Sex-specific expression, synthesis and localization of aromatase regulators in one-year-old Atlantic salmon ovaries and testes.

von Schalburg KR, Gowen BE, Rondeau EB, Johnson NW, Minkley DR, Leong JS, Davidson WS, Koop BF.

Comp Biochem Physiol B Biochem Mol Biol. 2013 Apr;164(4):236-46. doi: 10.1016/j.cbpb.2013.01.004. Epub 2013 Feb 4.

PMID:
23391703
16.

Regulation and expression of sexual differentiation factors in embryonic and extragonadal tissues of Atlantic salmon.

von Schalburg KR, Yasuike M, Yazawa R, de Boer JG, Reid L, So S, Robb A, Rondeau EB, Phillips RB, Davidson WS, Koop BF.

BMC Genomics. 2011 Jan 13;12:31. doi: 10.1186/1471-2164-12-31.

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