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Items: 1 to 50 of 160

1.

Whole-Genome Sequencing Identifies a Rice Grain Shape Mutant, gs9-1.

Jiang L, Li G, Chern M, Jain R, Pham NT, Martin JA, Schackwitz WS, Zhao J, Ruan D, Huang R, Zheng J, Ronald PC.

Rice (N Y). 2019 Jul 18;12(1):52. doi: 10.1186/s12284-019-0308-8.

2.

Sub1 Rice: Engineering Rice for Climate Change.

Emerick K, Ronald PC.

Cold Spring Harb Perspect Biol. 2019 Jun 10. pii: a034637. doi: 10.1101/cshperspect.a034637. [Epub ahead of print]

PMID:
31182543
3.

A web-based tool for the prediction of rice transcription factor function.

Chandran AKN, Moon S, Yoo YH, Gho YS, Cao P, Sharma R, Sharma MK, Ronald PC, Jung KH.

Database (Oxford). 2019 Jan 1;2019. pii: baz061. doi: 10.1093/database/baz061.

4.

Biosynthesis and secretion of the microbial sulfated peptide RaxX and binding to the rice XA21 immune receptor.

Luu DD, Joe A, Chen Y, Parys K, Bahar O, Pruitt R, Chan LJG, Petzold CJ, Long K, Adamchak C, Stewart V, Belkhadir Y, Ronald PC.

Proc Natl Acad Sci U S A. 2019 Apr 23;116(17):8525-8534. doi: 10.1073/pnas.1818275116. Epub 2019 Apr 4.

PMID:
30948631
5.

Genetic Engineering for Disease Resistance in Plants: Recent Progress and Future Perspectives.

Dong OX, Ronald PC.

Plant Physiol. 2019 May;180(1):26-38. doi: 10.1104/pp.18.01224. Epub 2019 Mar 13. No abstract available.

6.

Variation and inheritance of the Xanthomonas raxX-raxSTAB gene cluster required for activation of XA21-mediated immunity.

Liu F, McDonald M, Schwessinger B, Joe A, Pruitt R, Erickson T, Zhao X, Stewart V, Ronald PC.

Mol Plant Pathol. 2019 May;20(5):656-672. doi: 10.1111/mpp.12783. Epub 2019 Feb 18.

7.

A Genome-Scale Co-Functional Network of Xanthomonas Genes Can Accurately Reconstruct Regulatory Circuits Controlled by Two-Component Signaling Systems.

Kim H, Joe A, Lee M, Yang S, Ma X, Ronald PC, Lee I.

Mol Cells. 2019 Feb 28;42(2):166-174. doi: 10.14348/molcells.2018.0403. Epub 2019 Feb 1.

8.

Four tyrosine residues of the rice immune receptor XA21 are not required for interaction with the co-receptor OsSERK2 or resistance to Xanthomonas oryzae pv. oryzae.

Caddell DF, Wei T, Sharma S, Oh MH, Park CJ, Canlas P, Huber SC, Ronald PC.

PeerJ. 2018 Dec 11;6:e6074. doi: 10.7717/peerj.6074. eCollection 2018.

9.

A single transcription factor promotes both yield and immunity in rice.

Wang J, Zhou L, Shi H, Chern M, Yu H, Yi H, He M, Yin J, Zhu X, Li Y, Li W, Liu J, Wang J, Chen X, Qing H, Wang Y, Liu G, Wang W, Li P, Wu X, Zhu L, Zhou JM, Ronald PC, Li S, Li J, Chen X.

Science. 2018 Sep 7;361(6406):1026-1028. doi: 10.1126/science.aat7675.

PMID:
30190406
10.

A call for science-based review of the European court's decision on gene-edited crops.

Urnov FD, Ronald PC, Carroll D.

Nat Biotechnol. 2018 Sep 6;36(9):800-802. doi: 10.1038/nbt.4252. No abstract available.

PMID:
30188544
11.

Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification.

Li G, Jones KC, Eudes A, Pidatala VR, Sun J, Xu F, Zhang C, Wei T, Jain R, Birdseye D, Canlas PE, Baidoo EEK, Duong PQ, Sharma MK, Singh S, Ruan D, Keasling JD, Mortimer JC, Loqué D, Bartley LE, Scheller HV, Ronald PC.

BMC Biotechnol. 2018 Sep 4;18(1):54. doi: 10.1186/s12896-018-0464-8.

12.

KBase: The United States Department of Energy Systems Biology Knowledgebase.

Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, Dehal P, Ware D, Perez F, Canon S, Sneddon MW, Henderson ML, Riehl WJ, Murphy-Olson D, Chan SY, Kamimura RT, Kumari S, Drake MM, Brettin TS, Glass EM, Chivian D, Gunter D, Weston DJ, Allen BH, Baumohl J, Best AA, Bowen B, Brenner SE, Bun CC, Chandonia JM, Chia JM, Colasanti R, Conrad N, Davis JJ, Davison BH, DeJongh M, Devoid S, Dietrich E, Dubchak I, Edirisinghe JN, Fang G, Faria JP, Frybarger PM, Gerlach W, Gerstein M, Greiner A, Gurtowski J, Haun HL, He F, Jain R, Joachimiak MP, Keegan KP, Kondo S, Kumar V, Land ML, Meyer F, Mills M, Novichkov PS, Oh T, Olsen GJ, Olson R, Parrello B, Pasternak S, Pearson E, Poon SS, Price GA, Ramakrishnan S, Ranjan P, Ronald PC, Schatz MC, Seaver SMD, Shukla M, Sutormin RA, Syed MH, Thomason J, Tintle NL, Wang D, Xia F, Yoo H, Yoo S, Yu D.

Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163. No abstract available.

13.

The rice XA21 ectodomain fused to the Arabidopsis EFR cytoplasmic domain confers resistance to Xanthomonas oryzae pv. oryzae.

Thomas NC, Oksenberg N, Liu F, Caddell D, Nalyvayko A, Nguyen Y, Schwessinger B, Ronald PC.

PeerJ. 2018 May 9;6:e4456. doi: 10.7717/peerj.4456. eCollection 2018.

14.

Loss of function of a rice TPR-domain RNA-binding protein confers broad-spectrum disease resistance.

Zhou X, Liao H, Chern M, Yin J, Chen Y, Wang J, Zhu X, Chen Z, Yuan C, Zhao W, Wang J, Li W, He M, Ma B, Wang J, Qin P, Chen W, Wang Y, Liu J, Qian Y, Wang W, Wu X, Li P, Zhu L, Li S, Ronald PC, Chen X.

Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3174-3179. doi: 10.1073/pnas.1705927115. Epub 2018 Feb 5.

15.
16.

The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.

Li G, Jain R, Chern M, Pham NT, Martin JA, Wei T, Schackwitz WS, Lipzen AM, Duong PQ, Jones KC, Jiang L, Ruan D, Bauer D, Peng Y, Barry KW, Schmutz J, Ronald PC.

Plant Cell. 2017 Jun;29(6):1218-1231. doi: 10.1105/tpc.17.00154. Epub 2017 Jun 2.

17.

A microbially derived tyrosine-sulfated peptide mimics a plant peptide hormone.

Pruitt RN, Joe A, Zhang W, Feng W, Stewart V, Schwessinger B, Dinneny JR, Ronald PC.

New Phytol. 2017 Jul;215(2):725-736. doi: 10.1111/nph.14609. Epub 2017 May 30.

18.

Silencing of the Rice Gene LRR1 Compromises Rice Xa21 Transcript Accumulation and XA21-Mediated Immunity.

Caddell DF, Park CJ, Thomas NC, Canlas PE, Ronald PC.

Rice (N Y). 2017 Dec;10(1):23. doi: 10.1186/s12284-017-0162-5. Epub 2017 May 22.

19.

WheatNet: a Genome-Scale Functional Network for Hexaploid Bread Wheat, Triticum aestivum.

Lee T, Hwang S, Kim CY, Shim H, Kim H, Ronald PC, Marcotte EM, Lee I.

Mol Plant. 2017 Aug 7;10(8):1133-1136. doi: 10.1016/j.molp.2017.04.006. Epub 2017 Apr 24. No abstract available.

20.
21.

Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae.

Wei T, Chen TC, Ho YT, Ronald PC.

PeerJ. 2016 Oct 5;4:e2507. doi: 10.7717/peerj.2507. eCollection 2016.

22.

XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves.

Thomas NC, Schwessinger B, Liu F, Chen H, Wei T, Nguyen YP, Shaker IWF, Ronald PC.

PeerJ. 2016 Sep 28;4:e2446. doi: 10.7717/peerj.2446. eCollection 2016.

23.

Updated Rice Kinase Database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes.

Chandran AKN, Yoo YH, Cao P, Sharma R, Sharma M, Dardick C, Ronald PC, Jung KH.

Rice (N Y). 2016 Dec;9(1):40. doi: 10.1186/s12284-016-0106-5. Epub 2016 Aug 19.

24.

Cell Wall Composition and Candidate Biosynthesis Gene Expression During Rice Development.

Lin F, Manisseri C, Fagerström A, Peck ML, Vega-Sánchez ME, Williams B, Chiniquy DM, Saha P, Pattathil S, Conlin B, Zhu L, Hahn MG, Willats WG, Scheller HV, Ronald PC, Bartley LE.

Plant Cell Physiol. 2016 Oct;57(10):2058-2075. Epub 2016 Aug 1.

PMID:
27481893
25.

Correction: A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.

Chern M, Xu Q, Bart RS, Bai W, Ruan D, Sze-To WH, Canlas PE, Jain R, Chen X, Ronald PC.

PLoS Genet. 2016 Jul 6;12(7):e1006182. doi: 10.1371/journal.pgen.1006182. eCollection 2016 Jul.

26.

Overexpression of Thiamin Biosynthesis Genes in Rice Increases Leaf and Unpolished Grain Thiamin Content But Not Resistance to Xanthomonas oryzae pv. oryzae.

Dong W, Thomas N, Ronald PC, Goyer A.

Front Plant Sci. 2016 May 10;7:616. doi: 10.3389/fpls.2016.00616. eCollection 2016.

27.

A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.

Chern M, Xu Q, Bart RS, Bai W, Ruan D, Sze-To WH, Canlas PE, Jain R, Chen X, Ronald PC.

PLoS Genet. 2016 May 13;12(5):e1006049. doi: 10.1371/journal.pgen.1006049. eCollection 2016 May. Erratum in: PLoS Genet. 2016 Jul;12(7):e1006182.

28.

Genome-Wide Sequencing of 41 Rice (Oryza sativa L.) Mutated Lines Reveals Diverse Mutations Induced by Fast-Neutron Irradiation.

Li G, Chern M, Jain R, Martin JA, Schackwitz WS, Jiang L, Vega-Sánchez ME, Lipzen AM, Barry KW, Schmutz J, Ronald PC.

Mol Plant. 2016 Jul 6;9(7):1078-81. doi: 10.1016/j.molp.2016.03.009. Epub 2016 Mar 24. No abstract available.

29.

Bacterial Outer Membrane Vesicles Induce Plant Immune Responses.

Bahar O, Mordukhovich G, Luu DD, Schwessinger B, Daudi A, Jehle AK, Felix G, Ronald PC.

Mol Plant Microbe Interact. 2016 May;29(5):374-84. doi: 10.1094/MPMI-12-15-0270-R. Epub 2016 Mar 29.

30.

Overexpression of Rice Wall-Associated Kinase 25 (OsWAK25) Alters Resistance to Bacterial and Fungal Pathogens.

Harkenrider M, Sharma R, De Vleesschauwer D, Tsao L, Zhang X, Chern M, Canlas P, Zuo S, Ronald PC.

PLoS One. 2016 Jan 21;11(1):e0147310. doi: 10.1371/journal.pone.0147310. eCollection 2016.

31.

Suppression of bacterial infection in rice by treatment with a sulfated peptide.

Wei T, Chern M, Liu F, Ronald PC.

Mol Plant Pathol. 2016 Dec;17(9):1493-1498. doi: 10.1111/mpp.12368. Epub 2016 Apr 13.

32.

A second-generation expression system for tyrosine-sulfated proteins and its application in crop protection.

Schwessinger B, Li X, Ellinghaus TL, Chan LJ, Wei T, Joe A, Thomas N, Pruitt R, Adams PD, Chern MS, Petzold CJ, Liu CC, Ronald PC.

Integr Biol (Camb). 2016 Apr 18;8(4):542-5. doi: 10.1039/c5ib00232j. Epub 2015 Nov 27.

33.

The rice immune receptor XA21 recognizes a tyrosine-sulfated protein from a Gram-negative bacterium.

Pruitt RN, Schwessinger B, Joe A, Thomas N, Liu F, Albert M, Robinson MR, Chan LJ, Luu DD, Chen H, Bahar O, Daudi A, De Vleesschauwer D, Caddell D, Zhang W, Zhao X, Li X, Heazlewood JL, Ruan D, Majumder D, Chern M, Kalbacher H, Midha S, Patil PB, Sonti RV, Petzold CJ, Liu CC, Brodbelt JS, Felix G, Ronald PC.

Sci Adv. 2015 Jul 24;1(6):e1500245. doi: 10.1126/sciadv.1500245. eCollection 2015 Jul.

34.

Structural characterization of a mixed-linkage glucan deficient mutant reveals alteration in cellulose microfibril orientation in rice coleoptile mesophyll cell walls.

Smith-Moritz AM, Hao Z, Fernández-Niño SG, Fangel JU, Verhertbruggen Y, Holman HY, Willats WG, Ronald PC, Scheller HV, Heazlewood JL, Vega-Sánchez ME.

Front Plant Sci. 2015 Aug 18;6:628. doi: 10.3389/fpls.2015.00628. eCollection 2015.

35.

Phylogenomics databases for facilitating functional genomics in rice.

Jung KH, Cao P, Sharma R, Jain R, Ronald PC.

Rice (N Y). 2015 Dec;8(1):60. doi: 10.1186/s12284-015-0060-7. Epub 2015 Jul 30.

36.

The Use of a Dexamethasone-inducible System to Synchronize Xa21 Expression to Study Rice Immunity.

Caddell DF, Wei T, Park CJ, Ronald PC.

Bio Protoc. 2015 May 5;5(9). pii: e1468.

37.

Correction: Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses.

Schwessinger B, Bahar O, Thomas N, Holton N, Nekrasov V, Ruan D, Canlas PE, Daudi A, Petzold CJ, Singan VR, Kuo R, Chovatia M, Daum C, Heazlewood JL, Zipfel C, Ronald PC.

PLoS Pathog. 2015 Apr 23;11(4):e1004872. doi: 10.1371/journal.ppat.1004872. eCollection 2015 Apr.

38.

Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses.

Schwessinger B, Bahar O, Thomas N, Holton N, Nekrasov V, Ruan D, Canlas PE, Daudi A, Petzold CJ, Singan VR, Kuo R, Chovatia M, Daum C, Heazlewood JL, Zipfel C, Ronald PC.

PLoS Pathog. 2015 Mar 30;11(3):e1004809. doi: 10.1371/journal.ppat.1004809. eCollection 2015 Mar. Erratum in: PLoS Pathog. 2015 Apr;11(4):e1004872. Thomas, Nicolas [corrected to Thomas, Nicholas].

39.

RiceNet v2: an improved network prioritization server for rice genes.

Lee T, Oh T, Yang S, Shin J, Hwang S, Kim CY, Kim H, Shim H, Shim JE, Ronald PC, Lee I.

Nucleic Acids Res. 2015 Jul 1;43(W1):W122-7. doi: 10.1093/nar/gkv253. Epub 2015 Mar 26.

40.

Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum).

Lao J, Sharma MK, Sharma R, Fernández-Niño SM, Schmutz J, Ronald PC, Heazlewood JL, Schwessinger B.

Proteomics. 2015 Jul;15(13):2286-90. doi: 10.1002/pmic.201400487. Epub 2015 Mar 16.

PMID:
25677556
41.

The phylogenetically-related pattern recognition receptors EFR and XA21 recruit similar immune signaling components in monocots and dicots.

Holton N, Nekrasov V, Ronald PC, Zipfel C.

PLoS Pathog. 2015 Jan 21;11(1):e1004602. doi: 10.1371/journal.ppat.1004602. eCollection 2015 Jan.

42.

Engineering temporal accumulation of a low recalcitrance polysaccharide leads to increased C6 sugar content in plant cell walls.

Vega-Sánchez ME, Loqué D, Lao J, Catena M, Verhertbruggen Y, Herter T, Yang F, Harholt J, Ebert B, Baidoo EE, Keasling JD, Scheller HV, Heazlewood JL, Ronald PC.

Plant Biotechnol J. 2015 Sep;13(7):903-14. doi: 10.1111/pbi.12326. Epub 2015 Jan 14.

43.
44.

Structure of the OsSERK2 leucine-rich repeat extracellular domain.

McAndrew R, Pruitt RN, Kamita SG, Pereira JH, Majumdar D, Hammock BD, Adams PD, Ronald PC.

Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):3080-6. doi: 10.1107/S1399004714021178. Epub 2014 Oct 29.

45.

OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae.

Zuo S, Zhou X, Chen M, Zhang S, Schwessinger B, Ruan D, Yuan C, Wang J, Chen X, Ronald PC.

J Integr Plant Biol. 2014 Dec;56(12):1179-1192. doi: 10.1111/jipb.12290. Epub 2014 Nov 16.

46.
47.

Lab to farm: applying research on plant genetics and genomics to crop improvement.

Ronald PC.

PLoS Biol. 2014 Jun 10;12(6):e1001878. doi: 10.1371/journal.pbio.1001878. eCollection 2014 Jun.

48.

The plant glycosyltransferase clone collection for functional genomics.

Lao J, Oikawa A, Bromley JR, McInerney P, Suttangkakul A, Smith-Moritz AM, Plahar H, Chiu TY, González Fernández-Niño SM, Ebert B, Yang F, Christiansen KM, Hansen SF, Stonebloom S, Adams PD, Ronald PC, Hillson NJ, Hadi MZ, Vega-Sánchez ME, Loqué D, Scheller HV, Heazlewood JL.

Plant J. 2014 Aug;79(3):517-29. doi: 10.1111/tpj.12577. Epub 2014 Jul 9. Erratum in: Plant J. 2014 Dec;80(5):936.

49.

Rice BiP3 regulates immunity mediated by the PRRs XA3 and XA21 but not immunity mediated by the NB-LRR protein, Pi5.

Park CJ, Song MY, Kim CY, Jeon JS, Ronald PC.

Biochem Biophys Res Commun. 2014 May 23;448(1):70-5. doi: 10.1016/j.bbrc.2014.04.093. Epub 2014 Apr 26.

PMID:
24780396
50.

An XA21-associated kinase (OsSERK2) regulates immunity mediated by the XA21 and XA3 immune receptors.

Chen X, Zuo S, Schwessinger B, Chern M, Canlas PE, Ruan D, Zhou X, Wang J, Daudi A, Petzold CJ, Heazlewood JL, Ronald PC.

Mol Plant. 2014 May;7(5):874-92. doi: 10.1093/mp/ssu003. Epub 2014 Jan 30.

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