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Items: 1 to 50 of 133

1.

FXYD5 (Dysadherin) upregulation predicts shorter survival and reveals platinum resistance in high-grade serous ovarian cancer patients.

Tassi RA, Gambino A, Ardighieri L, Bignotti E, Todeschini P, Romani C, Zanotti L, Bugatti M, Borella F, Katsaros D, Tognon G, Sartori E, Odicino F, Romualdi C, Ravaggi A.

Br J Cancer. 2019 Aug 22. doi: 10.1038/s41416-019-0553-z. [Epub ahead of print]

PMID:
31434988
2.

Increased NK Cell Count in Multiple Sclerosis Patients Treated With Dimethyl Fumarate: A 2-Year Longitudinal Study.

Marastoni D, Buriani A, Pisani AI, Crescenzo F, Zuco C, Fortinguerra S, Sorrenti V, Marenda B, Romualdi C, Magliozzi R, Monaco S, Calabrese M.

Front Immunol. 2019 Jul 19;10:1666. doi: 10.3389/fimmu.2019.01666. eCollection 2019.

3.

MOSClip: multi-omic and survival pathway analysis for the identification of survival associated gene and modules.

Martini P, Chiogna M, Calura E, Romualdi C.

Nucleic Acids Res. 2019 Aug 22;47(14):e80. doi: 10.1093/nar/gkz324.

4.

rs4143815-PDL1, a New Potential Immunogenetic Biomarker of Biochemical Recurrence in Locally Advanced Prostate Cancer after Radiotherapy.

Zanusso C, Dreussi E, Bortolus R, Romualdi C, Gagno S, De Mattia E, Romanato L, Sartor F, Quartuccio L, Cecchin E, Toffoli G.

Int J Mol Sci. 2019 Apr 27;20(9). pii: E2082. doi: 10.3390/ijms20092082.

5.

Transcriptomic Analysis of Single Isolated Myofibers Identifies miR-27a-3p and miR-142-3p as Regulators of Metabolism in Skeletal Muscle.

Chemello F, Grespi F, Zulian A, Cancellara P, Hebert-Chatelain E, Martini P, Bean C, Alessio E, Buson L, Bazzega M, Armani A, Sandri M, Ferrazza R, Laveder P, Guella G, Reggiani C, Romualdi C, Bernardi P, Scorrano L, Cagnin S, Lanfranchi G.

Cell Rep. 2019 Mar 26;26(13):3784-3797.e8. doi: 10.1016/j.celrep.2019.02.105.

6.

Multisite analysis of high-grade serous epithelial ovarian cancers identifies genomic regions of focal and recurrent copy number alteration in 3q26.2 and 8q24.3.

Ballabio S, Craparotta I, Paracchini L, Mannarino L, Corso S, Pezzotta MG, Vescio M, Fruscio R, Romualdi C, Dainese E, Ceppi L, Calura E, Pileggi S, Siravegna G, Pattini L, Martini P, Delle Marchette M, Mangioni C, Ardizzoia A, Pellegrino A, Landoni F, D'Incalci M, Beltrame L, Marchini S.

Int J Cancer. 2019 Mar 20. doi: 10.1002/ijc.32288. [Epub ahead of print]

PMID:
30892690
7.

Transcriptome Profiles of Human Visceral Adipocytes in Obesity and Colorectal Cancer Unravel the Effects of Body Mass Index and Polyunsaturated Fatty Acids on Genes and Biological Processes Related to Tumorigenesis.

Del Cornò M, Baldassarre A, Calura E, Conti L, Martini P, Romualdi C, Varì R, Scazzocchio B, D'Archivio M, Masotti A, Gessani S.

Front Immunol. 2019 Feb 19;10:265. doi: 10.3389/fimmu.2019.00265. eCollection 2019.

8.

Single cell analysis reveals the involvement of the long non-coding RNA Pvt1 in the modulation of muscle atrophy and mitochondrial network.

Alessio E, Buson L, Chemello F, Peggion C, Grespi F, Martini P, Massimino ML, Pacchioni B, Millino C, Romualdi C, Bertoli A, Scorrano L, Lanfranchi G, Cagnin S.

Nucleic Acids Res. 2019 Feb 28;47(4):1653-1670. doi: 10.1093/nar/gkz007.

9.

Direct generation of human naive induced pluripotent stem cells from somatic cells in microfluidics.

Giulitti S, Pellegrini M, Zorzan I, Martini P, Gagliano O, Mutarelli M, Ziller MJ, Cacchiarelli D, Romualdi C, Elvassore N, Martello G.

Nat Cell Biol. 2019 Feb;21(2):275-286. doi: 10.1038/s41556-018-0254-5. Epub 2018 Dec 31.

PMID:
30598530
10.

Paradoxical GH Increase During OGTT Is Associated With First-Generation Somatostatin Analog Responsiveness in Acromegaly.

Scaroni C, Albiger N, Daniele A, Dassie F, Romualdi C, Vazza G, Regazzo D, Ferraù F, Barresi V, Maffeis V, Gardiman MP, Cannavò S, Maffei P, Ceccato F, Losa M, Occhi G.

J Clin Endocrinol Metab. 2019 Mar 1;104(3):856-862. doi: 10.1210/jc.2018-01360.

PMID:
30285115
11.

metaGraphite-a new layer of pathway annotation to get metabolite networks.

Sales G, Calura E, Romualdi C.

Bioinformatics. 2019 Apr 1;35(7):1258-1260. doi: 10.1093/bioinformatics/bty719.

PMID:
30184047
12.

Changes in Accident & Emergency Visits and Return Visits in Relation to the Enforcement of Daylight Saving Time and Photoperiod.

Ferrazzi E, Romualdi C, Ocello M, Frighetto G, Turco M, Vigolo S, Fabris F, Angeli P, Vettore G, Costa R, Montagnese S.

J Biol Rhythms. 2018 Oct;33(5):555-564. doi: 10.1177/0748730418791097. Epub 2018 Jul 30.

PMID:
30056770
13.

The effect of fingolimod on focal and diffuse grey matter damage in active MS patients.

Bajrami A, Pitteri M, Castellaro M, Pizzini F, Romualdi C, Montemezzi S, Monaco S, Calabrese M.

J Neurol. 2018 Sep;265(9):2154-2161. doi: 10.1007/s00415-018-8952-2. Epub 2018 Jun 25.

PMID:
29938336
14.

The cortical damage, early relapses, and onset of the progressive phase in multiple sclerosis.

Scalfari A, Romualdi C, Nicholas RS, Mattoscio M, Magliozzi R, Morra A, Monaco S, Muraro PA, Calabrese M.

Neurology. 2018 Jun 12;90(24):e2107-e2118. doi: 10.1212/WNL.0000000000005685. Epub 2018 May 16.

15.

Inflammatory intrathecal profiles and cortical damage in multiple sclerosis.

Magliozzi R, Howell OW, Nicholas R, Cruciani C, Castellaro M, Romualdi C, Rossi S, Pitteri M, Benedetti MD, Gajofatto A, Pizzini FB, Montemezzi S, Rasia S, Capra R, Bertoldo A, Facchiano F, Monaco S, Reynolds R, Calabrese M.

Ann Neurol. 2018 Apr;83(4):739-755. doi: 10.1002/ana.25197.

16.

Analysis of potential factors affecting allografts contamination at retrieval.

Paolin A, Romualdi C, Romagnoli L, Trojan D.

Cell Tissue Bank. 2017 Dec;18(4):539-545. doi: 10.1007/s10561-017-9667-9. Epub 2017 Oct 17.

17.

LINE-1 hypomethylation is associated to specific clinico-pathological features in Stage I non-small cell lung cancer.

Imperatori A, Sahnane N, Rotolo N, Franzi F, Nardecchia E, Libera L, Romualdi C, Cattoni M, Sessa F, Dominioni L, Furlan D.

Lung Cancer. 2017 Jun;108:83-89. doi: 10.1016/j.lungcan.2017.03.003. Epub 2017 Mar 6.

PMID:
28625654
18.

NELL1, whose high expression correlates with negative outcomes, has different methylation patterns in alveolar and embryonal rhabdomyosarcoma.

Tombolan L, Poli E, Martini P, Zin A, Romualdi C, Bisogno G, Lanfranchi G.

Oncotarget. 2017 May 16;8(20):33086-33099. doi: 10.18632/oncotarget.16526.

19.

KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba).

Sales G, Deagle BE, Calura E, Martini P, Biscontin A, De Pittà C, Kawaguchi S, Romualdi C, Meyer B, Costa R, Jarman S.

PLoS One. 2017 Feb 10;12(2):e0171908. doi: 10.1371/journal.pone.0171908. eCollection 2017.

20.

simPATHy: a new method for simulating data from perturbed biological PATHways.

Salviato E, Djordjilovic V, Chiogna M, Romualdi C.

Bioinformatics. 2017 Feb 1;33(3):456-457. doi: 10.1093/bioinformatics/btw642.

PMID:
28172414
21.

Circulating Cell-Free DNA in Dogs with Mammary Tumors: Short and Long Fragments and Integrity Index.

Beffagna G, Sammarco A, Bedin C, Romualdi C, Mainenti M, Mollo A, Cavicchioli L, Ferro S, Trez D, De Maria R, Nitti D, Saccani A, Campanella M, Agostini M, Zappulli V.

PLoS One. 2017 Jan 12;12(1):e0169454. doi: 10.1371/journal.pone.0169454. eCollection 2017.

22.

Circulating miRNA landscape identifies miR-1246 as promising diagnostic biomarker in high-grade serous ovarian carcinoma: A validation across two independent cohorts.

Todeschini P, Salviato E, Paracchini L, Ferracin M, Petrillo M, Zanotti L, Tognon G, Gambino A, Calura E, Caratti G, Martini P, Beltrame L, Maragoni L, Gallo D, Odicino FE, Sartori E, Scambia G, Negrini M, Ravaggi A, D'Incalci M, Marchini S, Bignotti E, Romualdi C.

Cancer Lett. 2017 Mar 1;388:320-327. doi: 10.1016/j.canlet.2016.12.017. Epub 2016 Dec 22.

PMID:
28017893
23.

A systems biology approach to investigate the mechanism of action of trabectedin in a model of myelomonocytic leukemia.

Mannarino L, Paracchini L, Craparotta I, Romano M, Marchini S, Gatta R, Erba E, Clivio L, Romualdi C, D'Incalci M, Beltrame L, Pattini L.

Pharmacogenomics J. 2018 Jan;18(1):56-63. doi: 10.1038/tpj.2016.76. Epub 2016 Dec 13.

24.

Global DNA methylation profiling uncovers distinct methylation patterns of protocadherin alpha4 in metastatic and non-metastatic rhabdomyosarcoma.

Tombolan L, Poli E, Martini P, Zin A, Millino C, Pacchioni B, Celegato B, Bisogno G, Romualdi C, Rosolen A, Lanfranchi G.

BMC Cancer. 2016 Nov 14;16(1):886.

25.

lncRNAs as Novel Indicators of Patients' Prognosis in Stage I Epithelial Ovarian Cancer: A Retrospective and Multicentric Study.

Martini P, Paracchini L, Caratti G, Mello-Grand M, Fruscio R, Beltrame L, Calura E, Sales G, Ravaggi A, Bignotti E, Odicino FE, Sartori E, Perego P, Katsaros D, Craparotta I, Chiorino G, Cagnin S, Mannarino L, Ceppi L, Mangioni C, Ghimenti C, D'Incalci M, Marchini S, Romualdi C.

Clin Cancer Res. 2017 May 1;23(9):2356-2366. doi: 10.1158/1078-0432.CCR-16-1402. Epub 2016 Nov 8.

26.

Cognitive impairment predicts disability progression and cortical thinning in MS: An 8-year study.

Pitteri M, Romualdi C, Magliozzi R, Monaco S, Calabrese M.

Mult Scler. 2017 May;23(6):848-854. doi: 10.1177/1352458516665496. Epub 2016 Aug 15.

PMID:
27527906
27.

A data-driven network model of primary myelofibrosis: transcriptional and post-transcriptional alterations in CD34+ cells.

Calura E, Pizzini S, Bisognin A, Coppe A, Sales G, Gaffo E, Fanelli T, Mannarelli C, Zini R, Norfo R, Pennucci V, Manfredini R, Romualdi C, Guglielmelli P, Vannucchi AM, Bortoluzzi S.

Blood Cancer J. 2016 Jun 24;6(6):e439. doi: 10.1038/bcj.2016.47.

28.

Antimicrobial use and microbiological testing in district general hospital ICUs of the Veneto region of north-east Italy.

Benedetti P, Sefton AM, Menegozzo M, Guerriero C, Bordignon G, Da Rin G, Romualdi C, Pellizzer G, Livermore DM.

Eur J Clin Microbiol Infect Dis. 2016 Oct;35(10):1627-38. doi: 10.1007/s10096-016-2701-1. Epub 2016 Jun 15.

PMID:
27301585
29.

Usefulness of the Total Thrombus-Formation Analysis System (T-TAS) in the diagnosis and characterization of von Willebrand disease.

Daidone V, Barbon G, Cattini MG, Pontara E, Romualdi C, Di Pasquale I, Hosokawa K, Casonato A.

Haemophilia. 2016 Nov;22(6):949-956. doi: 10.1111/hae.12971. Epub 2016 Jun 13.

PMID:
27293213
30.

A prognostic regulatory pathway in stage I epithelial ovarian cancer: new hints for the poor prognosis assessment.

Calura E, Paracchini L, Fruscio R, DiFeo A, Ravaggi A, Peronne J, Martini P, Sales G, Beltrame L, Bignotti E, Tognon G, Milani R, Clivio L, Dell'Anna T, Cattoretti G, Katsaros D, Sartori E, Mangioni C, Ardighieri L, D'Incalci M, Marchini S, Romualdi C.

Ann Oncol. 2016 Aug;27(8):1511-9. doi: 10.1093/annonc/mdw210. Epub 2016 May 18.

PMID:
27194815
31.

Similarity Measures Based on the Overlap of Ranked Genes Are Effective for Comparison and Classification of Microarray Data.

Serra F, Romualdi C, Fogolari F.

J Comput Biol. 2016 Jul;23(7):603-14. doi: 10.1089/cmb.2015.0057. Epub 2016 Apr 22.

PMID:
27104372
32.

Characterizing genomic alterations in cancer by complementary functional associations.

Kim JW, Botvinnik OB, Abudayyeh O, Birger C, Rosenbluh J, Shrestha Y, Abazeed ME, Hammerman PS, DiCara D, Konieczkowski DJ, Johannessen CM, Liberzon A, Alizad-Rahvar AR, Alexe G, Aguirre A, Ghandi M, Greulich H, Vazquez F, Weir BA, Van Allen EM, Tsherniak A, Shao DD, Zack TI, Noble M, Getz G, Beroukhim R, Garraway LA, Ardakani M, Romualdi C, Sales G, Barbie DA, Boehm JS, Hahn WC, Mesirov JP, Tamayo P.

Nat Biotechnol. 2016 May;34(5):539-46. doi: 10.1038/nbt.3527. Epub 2016 Apr 18.

33.

Identification of high-grade serous ovarian cancer miRNA species associated with survival and drug response in patients receiving neoadjuvant chemotherapy: a retrospective longitudinal analysis using matched tumor biopsies.

Petrillo M, Zannoni GF, Beltrame L, Martinelli E, DiFeo A, Paracchini L, Craparotta I, Mannarino L, Vizzielli G, Scambia G, D'Incalci M, Romualdi C, Marchini S.

Ann Oncol. 2016 Apr;27(4):625-34. doi: 10.1093/annonc/mdw007. Epub 2016 Jan 17.

PMID:
26782955
34.

Aberrant DNA methylation profiles of inherited and sporadic colorectal cancer.

Sahnane N, Magnoli F, Bernasconi B, Tibiletti MG, Romualdi C, Pedroni M, Ponz de Leon M, Magnani G, Reggiani-Bonetti L, Bertario L, Signoroni S, Capella C, Sessa F, Furlan D; AIFEG.

Clin Epigenetics. 2015 Dec 21;7:131. doi: 10.1186/s13148-015-0165-2. eCollection 2015.

35.

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses.

Moretto M, Sonego P, Dierckxsens N, Brilli M, Bianco L, Ledezma-Tejeida D, Gama-Castro S, Galardini M, Romualdi C, Laukens K, Collado-Vides J, Meysman P, Engelen K.

Nucleic Acids Res. 2016 Jan 4;44(D1):D620-3. doi: 10.1093/nar/gkv1251. Epub 2015 Nov 19.

36.

Disentangling the microRNA regulatory milieu in multiple myeloma: integrative genomics analysis outlines mixed miRNA-TF circuits and pathway-derived networks modulated in t(4;14) patients.

Calura E, Bisognin A, Manzoni M, Todoerti K, Taiana E, Sales G, Morgan GJ, Tonon G, Amodio N, Tassone P, Neri A, Agnelli L, Romualdi C, Bortoluzzi S.

Oncotarget. 2016 Jan 19;7(3):2367-78. doi: 10.18632/oncotarget.6151.

37.

Beneficial Bacteria Isolated from Grapevine Inner Tissues Shape Arabidopsis thaliana Roots.

Baldan E, Nigris S, Romualdi C, D'Alessandro S, Clocchiatti A, Zottini M, Stevanato P, Squartini A, Baldan B.

PLoS One. 2015 Oct 16;10(10):e0140252. doi: 10.1371/journal.pone.0140252. eCollection 2015.

38.

The self-morningness/eveningness (Self-ME): An extremely concise and totally subjective assessment of diurnal preference.

Turco M, Corrias M, Chiaromanni F, Bano M, Salamanca M, Caccin L, Merkel C, Amodio P, Romualdi C, De Pittà C, Costa R, Montagnese S.

Chronobiol Int. 2015;32(9):1192-200. doi: 10.3109/07420528.2015.1078807. Epub 2015 Oct 9.

PMID:
26453178
39.

Regional Distribution and Evolution of Gray Matter Damage in Different Populations of Multiple Sclerosis Patients.

Calabrese M, Reynolds R, Magliozzi R, Castellaro M, Morra A, Scalfari A, Farina G, Romualdi C, Gajofatto A, Pitteri M, Benedetti MD, Monaco S.

PLoS One. 2015 Aug 12;10(8):e0135428. doi: 10.1371/journal.pone.0135428. eCollection 2015.

40.

Graphical modeling for gene set analysis: A critical appraisal.

Djordjilović V, Chiogna M, Massa MS, Romualdi C.

Biom J. 2015 Sep;57(5):852-66. doi: 10.1002/bimj.201300287. Epub 2015 Jul 7.

PMID:
26149206
41.

Profiling cancer gene mutations in longitudinal epithelial ovarian cancer biopsies by targeted next-generation sequencing: a retrospective study.

Beltrame L, Di Marino M, Fruscio R, Calura E, Chapman B, Clivio L, Sina F, Mele C, Iatropoulos P, Grassi T, Fotia V, Romualdi C, Martini P, Noris M, Paracchini L, Craparotta I, Petrillo M, Milani R, Perego P, Ravaggi A, Zambelli A, Ronchetti E, D'Incalci M, Marchini S.

Ann Oncol. 2015 Jul;26(7):1363-71. doi: 10.1093/annonc/mdv164. Epub 2015 Apr 6.

PMID:
25846551
42.

Pyrosequencing and de novo assembly of Antarctic krill (Euphausia superba) transcriptome to study the adaptability of krill to climate-induced environmental changes.

Meyer B, Martini P, Biscontin A, De Pittà C, Romualdi C, Teschke M, Frickenhaus S, Harms L, Freier U, Jarman S, Kawaguchi S.

Mol Ecol Resour. 2015 Nov;15(6):1460-71. doi: 10.1111/1755-0998.12408. Epub 2015 Apr 9.

43.

A founder MYBPC3 mutation results in HCM with a high risk of sudden death after the fourth decade of life.

Calore C, De Bortoli M, Romualdi C, Lorenzon A, Angelini A, Basso C, Thiene G, Iliceto S, Rampazzo A, Melacini P.

J Med Genet. 2015 May;52(5):338-47. doi: 10.1136/jmedgenet-2014-102923. Epub 2015 Mar 4.

PMID:
25740977
44.

Microsatellite unstable gastrointestinal neuroendocrine carcinomas: a new clinicopathologic entity.

Sahnane N, Furlan D, Monti M, Romualdi C, Vanoli A, Vicari E, Solcia E, Capella C, Sessa F, La Rosa S.

Endocr Relat Cancer. 2015 Feb;22(1):35-45. doi: 10.1530/ERC-14-0410. Epub 2014 Dec 2.

PMID:
25465415
45.

Liver transcriptome analysis in gilthead sea bream upon exposure to low temperature.

Mininni AN, Milan M, Ferraresso S, Petochi T, Di Marco P, Marino G, Livi S, Romualdi C, Bargelloni L, Patarnello T.

BMC Genomics. 2014 Sep 6;15:765. doi: 10.1186/1471-2164-15-765.

46.

Analysis of differential miRNA expression in primary tumor and stroma of colorectal cancer patients.

Della Vittoria Scarpati G, Calura E, Di Marino M, Romualdi C, Beltrame L, Malapelle U, Troncone G, De Stefano A, Pepe S, De Placido S, D'Incalci M, Marchini S, Carlomagno C.

Biomed Res Int. 2014;2014:840921. doi: 10.1155/2014/840921. Epub 2014 Jul 10.

47.

timeClip: pathway analysis for time course data without replicates.

Martini P, Sales G, Calura E, Cagnin S, Chiogna M, Romualdi C.

BMC Bioinformatics. 2014;15 Suppl 5:S3. doi: 10.1186/1471-2105-15-S5-S3. Epub 2014 May 6.

48.

Integration analysis of microRNA and mRNA expression profiles in human peripheral blood lymphocytes cultured in modeled microgravity.

Girardi C, De Pittà C, Casara S, Calura E, Romualdi C, Celotti L, Mognato M.

Biomed Res Int. 2014;2014:296747. doi: 10.1155/2014/296747. Epub 2014 Jun 23.

49.

Prognostic relevance of aberrant DNA methylation in g1 and g2 pancreatic neuroendocrine tumors.

Stefanoli M, La Rosa S, Sahnane N, Romualdi C, Pastorino R, Marando A, Capella C, Sessa F, Furlan D.

Neuroendocrinology. 2014;100(1):26-34. doi: 10.1159/000365449. Epub 2014 Jul 5.

PMID:
25011998
50.

Wiring miRNAs to pathways: a topological approach to integrate miRNA and mRNA expression profiles.

Calura E, Martini P, Sales G, Beltrame L, Chiorino G, D'Incalci M, Marchini S, Romualdi C.

Nucleic Acids Res. 2014 Jun;42(11):e96. doi: 10.1093/nar/gku354. Epub 2014 May 6.

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