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Items: 42

1.

Genomic Variation Among and Within Six Juglans Species.

Stevens KA, Woeste K, Chakraborty S, Crepeau MW, Leslie CA, Martínez-García PJ, Puiu D, Romero-Severson J, Coggeshall M, Dandekar AM, Kluepfel D, Neale DB, Salzberg SL, Langley CH.

G3 (Bethesda). 2018 Jul 2;8(7):2153-2165. doi: 10.1534/g3.118.200030.

2.

Gaining a global perspective on Fagaceae genomic diversification and adaptation.

Cannon CH, Brendel O, Deng M, Hipp AL, Kremer A, Kua CS, Plomion C, Romero-Severson J, Sork VL.

New Phytol. 2018 May;218(3):894-897. doi: 10.1111/nph.15101. No abstract available.

3.

Back to America: tracking the origin of European introduced populations of Quercus rubra L.

Merceron NR, Leroy T, Chancerel E, Romero-Severson J, Borkowski DS, Ducousso A, Monty A, Porté AJ, Kremer A.

Genome. 2017 Sep;60(9):778-790. doi: 10.1139/gen-2016-0187.

4.

Balancing selection maintains diversity in a cold tolerance gene in broadly distributed live oaks.

Meireles JE, Beulke A, Borkowski DS, Romero-Severson J, Cavender-Bares J.

Genome. 2017 Sep;60(9):762-769. doi: 10.1139/gen-2016-0208. Epub 2017 Jul 6.

5.

High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra.

Konar A, Choudhury O, Bullis R, Fiedler L, Kruser JM, Stephens MT, Gailing O, Schlarbaum S, Coggeshall MV, Staton ME, Carlson JE, Emrich S, Romero-Severson J.

BMC Genomics. 2017 May 30;18(1):417. doi: 10.1186/s12864-017-3765-8.

6.

Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing.

Staton M, Best T, Khodwekar S, Owusu S, Xu T, Xu Y, Jennings T, Cronn R, Arumuganathan AK, Coggeshall M, Gailing O, Liang H, Romero-Severson J, Schlarbaum S, Carlson JE.

PLoS One. 2015 Dec 23;10(12):e0145031. doi: 10.1371/journal.pone.0145031. eCollection 2015.

7.

Genome-wide QTL mapping of saltwater tolerance in sibling species of Anopheles (malaria vector) mosquitoes.

Smith HA, White BJ, Kundert P, Cheng C, Romero-Severson J, Andolfatto P, Besansky NJ.

Heredity (Edinb). 2015 Nov;115(5):471-9. doi: 10.1038/hdy.2015.39. Epub 2015 Apr 29.

8.

Development of genomic microsatellites in Gleditsia triacanthos (Fabaceae) using Illumina sequencing.

Owusu SA, Staton M, Jennings TN, Schlarbaum S, Coggeshall MV, Romero-Severson J, Carlson JE, Gailing O.

Appl Plant Sci. 2013 Nov 28;1(12). pii: apps.1300050. doi: 10.3732/apps.1300050. eCollection 2013 Dec.

9.

Influence of mosquito genotype on transcriptional response to dengue virus infection.

Behura SK, Gomez-Machorro C, deBruyn B, Lovin DD, Harker BW, Romero-Severson J, Mori A, Severson DW.

Funct Integr Genomics. 2014 Sep;14(3):581-9. doi: 10.1007/s10142-014-0376-1. Epub 2014 May 6.

10.

Stage-specific transcription during development of Aedes aegypti.

Harker BW, Behura SK, deBruyn BS, Lovin DD, Mori A, Romero-Severson J, Severson DW.

BMC Dev Biol. 2013 Jul 22;13:29. doi: 10.1186/1471-213X-13-29.

11.

Human-impacted landscapes facilitate hybridization between a native and an introduced tree.

Hoban SM, McCleary TS, Schlarbaum SE, Anagnostakis SL, Romero-Severson J.

Evol Appl. 2012 Nov;5(7):720-31. doi: 10.1111/j.1752-4571.2012.00250.x.

12.

Comparative expression profiles of midgut genes in dengue virus refractory and susceptible Aedes aegypti across critical period for virus infection.

Chauhan C, Behura SK, Debruyn B, Lovin DD, Harker BW, Gomez-Machorro C, Mori A, Romero-Severson J, Severson DW.

PLoS One. 2012;7(10):e47350. doi: 10.1371/journal.pone.0047350. Epub 2012 Oct 15.

13.

Global cross-talk of genes of the mosquito Aedes aegypti in response to dengue virus infection.

Behura SK, Gomez-Machorro C, Harker BW, deBruyn B, Lovin DD, Hemme RR, Mori A, Romero-Severson J, Severson DW.

PLoS Negl Trop Dis. 2011 Nov;5(11):e1385. doi: 10.1371/journal.pntd.0001385. Epub 2011 Nov 15.

14.

Complete sequences of mitochondria genomes of Aedes aegypti and Culex quinquefasciatus and comparative analysis of mitochondrial DNA fragments inserted in the nuclear genomes.

Behura SK, Lobo NF, Haas B, deBruyn B, Lovin DD, Shumway MF, Puiu D, Romero-Severson J, Nene V, Severson DW.

Insect Biochem Mol Biol. 2011 Oct;41(10):770-7. doi: 10.1016/j.ibmb.2011.05.006. Epub 2011 May 27.

15.

RNAi knock-downs support roles for the mucin-like (AeIMUC1) gene and short-chain dehydrogenase/reductase (SDR) gene in Aedes aegypti susceptibility to Plasmodium gallinaceum.

Berois M, Romero-Severson J, Severson DW.

Med Vet Entomol. 2012 Mar;26(1):112-5. doi: 10.1111/j.1365-2915.2011.00965.x. Epub 2011 May 25.

16.

Heritability and adaptive phenotypic plasticity of adult body size in the mosquito Aedes aegypti with implications for dengue vector competence.

Schneider JR, Chadee DD, Mori A, Romero-Severson J, Severson DW.

Infect Genet Evol. 2011 Jan;11(1):11-6. doi: 10.1016/j.meegid.2010.10.019. Epub 2010 Nov 9.

17.

Range-wide distribution of genetic diversity in the North American tree Juglans cinerea: a product of range shifts, not ecological marginality or recent population decline.

Hoban SM, Borkowski DS, Brosi SL, McCleary TS, Thompson LM, McLachlan JS, Pereira MA, Schlarbaum SE, Romero-Severson J.

Mol Ecol. 2010 Nov;19(22):4876-91. doi: 10.1111/j.1365-294X.2010.04834.x. Epub 2010 Oct 12.

PMID:
21040046
18.

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle.

Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, Veenstra JA, Walenz B, Tubío JM, Ribeiro JM, Rozas J, Johnston JS, Reese JT, Popadic A, Tojo M, Raoult D, Reed DL, Tomoyasu Y, Kraus E, Mittapalli O, Margam VM, Li HM, Meyer JM, Johnson RM, Romero-Severson J, Vanzee JP, Alvarez-Ponce D, Vieira FG, Aguadé M, Guirao-Rico S, Anzola JM, Yoon KS, Strycharz JP, Unger MF, Christley S, Lobo NF, Seufferheld MJ, Wang N, Dasch GA, Struchiner CJ, Madey G, Hannick LI, Bidwell S, Joardar V, Caler E, Shao R, Barker SC, Cameron S, Bruggner RV, Regier A, Johnson J, Viswanathan L, Utterback TR, Sutton GG, Lawson D, Waterhouse RM, Venter JC, Strausberg RL, Berenbaum MR, Collins FH, Zdobnov EM, Pittendrigh BR.

Proc Natl Acad Sci U S A. 2010 Jul 6;107(27):12168-73. doi: 10.1073/pnas.1003379107. Epub 2010 Jun 21. Erratum in: Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6335. Krause, Emily [corrected to Kraus, Emily].

19.

Development of bacterial artificial chromosome library resources for parasitoid Hymenoptera (Nasonia vitripennis and Nasonia giraulti: Pteromalidae).

Muñoz-Torres MC, Saski C, Blackmon B, Romero-Severson J, Werren JH.

Insect Mol Biol. 2010 Feb;19 Suppl 1:181-7. doi: 10.1111/j.1365-2583.2009.00962.x.

PMID:
20167027
20.

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.

Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK; Nasonia Genome Working Group, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van de Zande L, Worley KC, Zdobnov EM, Aerts M, Albert S, Anaya VH, Anzola JM, Barchuk AR, Behura SK, Bera AN, Berenbaum MR, Bertossa RC, Bitondi MM, Bordenstein SR, Bork P, Bornberg-Bauer E, Brunain M, Cazzamali G, Chaboub L, Chacko J, Chavez D, Childers CP, Choi JH, Clark ME, Claudianos C, Clinton RA, Cree AG, Cristino AS, Dang PM, Darby AC, de Graaf DC, Devreese B, Dinh HH, Edwards R, Elango N, Elhaik E, Ermolaeva O, Evans JD, Foret S, Fowler GR, Gerlach D, Gibson JD, Gilbert DG, Graur D, Gründer S, Hagen DE, Han Y, Hauser F, Hultmark D, Hunter HC 4th, Hurst GD, Jhangian SN, Jiang H, Johnson RM, Jones AK, Junier T, Kadowaki T, Kamping A, Kapustin Y, Kechavarzi B, Kim J, Kim J, Kiryutin B, Koevoets T, Kovar CL, Kriventseva EV, Kucharski R, Lee H, Lee SL, Lees K, Lewis LR, Loehlin DW, Logsdon JM Jr, Lopez JA, Lozado RJ, Maglott D, Maleszka R, Mayampurath A, Mazur DJ, McClure MA, Moore AD, Morgan MB, Muller J, Munoz-Torres MC, Muzny DM, Nazareth LV, Neupert S, Nguyen NB, Nunes FM, Oakeshott JG, Okwuonu GO, Pannebakker BA, Pejaver VR, Peng Z, Pratt SC, Predel R, Pu LL, Ranson H, Raychoudhury R, Rechtsteiner A, Reese JT, Reid JG, Riddle M, Robertson HM, Romero-Severson J, Rosenberg M, Sackton TB, Sattelle DB, Schlüns H, Schmitt T, Schneider M, Schüler A, Schurko AM, Shuker DM, Simões ZL, Sinha S, Smith Z, Solovyev V, Souvorov A, Springauf A, Stafflinger E, Stage DE, Stanke M, Tanaka Y, Telschow A, Trent C, Vattathil S, Verhulst EC, Viljakainen L, Wanner KW, Waterhouse RM, Whitfield JB, Wilkes TE, Williamson M, Willis JH, Wolschin F, Wyder S, Yamada T, Yi SV, Zecher CN, Zhang L, Gibbs RA.

Science. 2010 Jan 15;327(5963):343-8. doi: 10.1126/science.1178028. Erratum in: Science. 2010 Mar 26;327(5973):1577.

21.

Geographically extensive hybridization between the forest trees American butternut and Japanese walnut.

Hoban SM, McCleary TS, Schlarbaum SE, Romero-Severson J.

Biol Lett. 2009 Jun 23;5(3):324-7. doi: 10.1098/rsbl.2009.0031. Epub 2009 Mar 18.

22.

Four cleaved amplified polymorphic sequence (CAPS) markers for the detection of the Juglans ailantifolia chloroplast in putatively native J. cinerea populations.

McCleary TS, Robichaud RL, Nuanes S, Anagnostakis SL, Schlarbaum SE, Romero-Severson J.

Mol Ecol Resour. 2009 Mar;9(2):525-7. doi: 10.1111/j.1755-0998.2008.02465.x. Epub 2009 Jan 31.

PMID:
21564682
23.

The CHD3 remodeler PICKLE promotes trimethylation of histone H3 lysine 27.

Zhang H, Rider SD Jr, Henderson JT, Fountain M, Chuang K, Kandachar V, Simons A, Edenberg HJ, Romero-Severson J, Muir WM, Ogas J.

J Biol Chem. 2008 Aug 15;283(33):22637-48. doi: 10.1074/jbc.M802129200. Epub 2008 Jun 6.

24.

Quantitative trait loci determining autogeny and body size in the Asian tiger mosquito (Aedes albopictus).

Mori A, Romero-Severson J, Black WC 4th, Severson DW.

Heredity (Edinb). 2008 Jul;101(1):75-82. doi: 10.1038/hdy.2008.32. Epub 2008 May 7.

25.

Thirteen nuclear microsatellite loci for butternut (Juglans cinerea L.).

Hoban S, Anderson R, McCleary T, Schlarbaum S, Romero-Severson J.

Mol Ecol Resour. 2008 May;8(3):643-6. doi: 10.1111/j.1471-8286.2007.02030.x.

PMID:
21585858
26.

Investigations of dengue-2 susceptibility and body size among Aedes aegypti populations.

Schneider JR, Mori A, Romero-Severson J, Chadee DD, Severson DW.

Med Vet Entomol. 2007 Dec;21(4):370-6.

PMID:
18092975
27.

Genetic basis for reproductive diapause is correlated with life history traits within the Culex pipiens complex.

Mori A, Romero-Severson J, Severson DW.

Insect Mol Biol. 2007 Oct;16(5):515-24. Epub 2007 Jul 17.

PMID:
17635616
28.

Sequencing of a new target genome: the Pediculus humanus humanus (Phthiraptera: Pediculidae) genome project.

Pittendrigh BR, Clark JM, Johnston JS, Lee SH, Romero-Severson J, Dasch GA.

J Med Entomol. 2006 Nov;43(6):1103-11.

PMID:
17162941
30.

PICKLE acts throughout the plant to repress expression of embryonic traits and may play a role in gibberellin-dependent responses.

Henderson JT, Li HC, Rider SD, Mordhorst AP, Romero-Severson J, Cheng JC, Robey J, Sung ZR, de Vries SC, Ogas J.

Plant Physiol. 2004 Mar;134(3):995-1005. Epub 2004 Feb 12.

31.

Genomic analysis in the sting-2 quantitative trait locus for defensive behavior in the honey bee, Apis mellifera.

Lobo NF, Ton LQ, Hill CA, Emore C, Romero-Severson J, Hunt GJ, Collins FH.

Genome Res. 2003 Dec;13(12):2588-93.

32.

Transcriptome identification of putative genes involved in protein catabolism and innate immune response in human body louse (Pediculicidae: Pediculus humanus).

Pedra JH, Brandt A, Li HM, Westerman R, Romero-Severson J, Pollack RJ, Murdock LL, Pittendrigh BR.

Insect Biochem Mol Biol. 2003 Nov;33(11):1135-43.

PMID:
14563364
33.

Transcriptome analysis of the cowpea weevil bruchid: identification of putative proteinases and alpha-amylases associated with food breakdown.

Pedra JH, Brandt A, Westerman R, Lobo N, Li HM, Romero-Severson J, Murdock LL, Pittendrigh BR.

Insect Mol Biol. 2003 Aug;12(4):405-12.

PMID:
12864920
34.

Coordinate repression of regulators of embryonic identity by PICKLE during germination in Arabidopsis.

Dean Rider S Jr, Henderson JT, Jerome RE, Edenberg HJ, Romero-Severson J, Ogas J.

Plant J. 2003 Jul;35(1):33-43.

35.

Genetic basis of heterosis explored by simple sequence repeat markers in a random-mated maize population.

Lu H, Romero-Severson J, Bernardo R.

Theor Appl Genet. 2003 Aug;107(3):494-502. Epub 2003 May 21.

PMID:
12759730
36.

Evidence for inversion polymorphism related to sympatric host race formation in the apple maggot fly, Rhagoletis pomonella.

Feder JL, Roethele JB, Filchak K, Niedbalski J, Romero-Severson J.

Genetics. 2003 Mar;163(3):939-53.

37.

Chromosomal regions associated with segregation distortion in maize.

Lu H, Romero-Severson J, Bernardo R.

Theor Appl Genet. 2002 Sep;105(4):622-628. Epub 2002 Jun 19.

PMID:
12582513
38.

Inversions and gene order shuffling in Anopheles gambiae and A. funestus.

Sharakhov IV, Serazin AC, Grushko OG, Dana A, Lobo N, Hillenmeyer ME, Westerman R, Romero-Severson J, Costantini C, Sagnon N, Collins FH, Besansky NJ.

Science. 2002 Oct 4;298(5591):182-5.

40.

Amplification of DNA markers from evolutionarily diverse genomes using single primers of simple-sequence repeats.

Gupta M, Chyi YS, Romero-Severson J, Owen JL.

Theor Appl Genet. 1994 Dec;89(7-8):998-1006. doi: 10.1007/BF00224530.

PMID:
24178116
41.

Improved tissue culture response of an elite maize inbred through backcross breeding, and identification of chromosomal regions important for regeneration by RFLP analysis.

Armstrong CL, Romero-Severson J, Hodges TK.

Theor Appl Genet. 1992 Aug;84(5-6):755-62. doi: 10.1007/BF00224181.

PMID:
24201370
42.

Pinning down loose ends: mapping telomeres and factors affecting their length.

Burr B, Burr FA, Matz EC, Romero-Severson J.

Plant Cell. 1992 Aug;4(8):953-60.

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