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Items: 27


Getting more from heterogeneous HIV-1 surveillance data in a high immigration country: estimation of incidence and undiagnosed population size using multiple biomarkers.

Giardina F, Romero-Severson EO, Axelsson M, Svedhem V, Leitner T, Britton T, Albert J.

Int J Epidemiol. 2019 Dec 1;48(6):1795-1803. doi: 10.1093/ije/dyz100.


Correction: Sensitivity of joint contagiousness and susceptibility-based dynamic optimal control strategies for HIV prevention.

Bulla I, Spicknall IH, Gromov D, Romero-Severson EO.

PLoS One. 2019 Feb 7;14(2):e0212251. doi: 10.1371/journal.pone.0212251. eCollection 2019.


Assessing Uncertainty in an Anatomical Site-Specific Gonorrhea Transmission Model of Men Who Have Sex With Men.

Spicknall IH, Mayer KH, Aral SO, Romero-Severson EO.

Sex Transm Dis. 2019 May;46(5):321-328. doi: 10.1097/OLQ.0000000000000953. Erratum in: Sex Transm Dis. 2019 Aug;46(8):e86.


Systematic evaluation of the population-level effects of alternative treatment strategies on the basic reproduction number.

Gromov D, Bulla I, Romero-Severson EO.

J Theor Biol. 2019 Feb 7;462:381-390. doi: 10.1016/j.jtbi.2018.11.029. Epub 2018 Nov 27.


Sensitivity of joint contagiousness and susceptibility-based dynamic optimal control strategies for HIV prevention.

Bulla I, Spickanll IH, Gromov D, Romero-Severson EO.

PLoS One. 2018 Oct 18;13(10):e0204741. doi: 10.1371/journal.pone.0204741. eCollection 2018. Erratum in: PLoS One. 2019 Feb 7;14(2):e0212251.


Screening for hepatitis D and PEG-Interferon over Tenofovir enhance general hepatitis control efforts in Brazil.

Goyal A, Romero-Severson EO.

PLoS One. 2018 Sep 7;13(9):e0203831. doi: 10.1371/journal.pone.0203831. eCollection 2018.


Accidental Father-to-Son HIV-1 Transmission During the Seroconversion Period.

Ezeonwumelu I, Bártolo I, Martin F, Abecasis A, Campos T, Romero-Severson EO, Leitner T, Taveira N.

AIDS Res Hum Retroviruses. 2018 Oct;34(10):857-862. doi: 10.1089/AID.2018.0060. Epub 2018 Sep 20.


Phylogenetic patterns recover known HIV epidemiological relationships and reveal common transmission of multiple variants.

Leitner T, Romero-Severson E.

Nat Microbiol. 2018 Sep;3(9):983-988. doi: 10.1038/s41564-018-0204-9. Epub 2018 Jul 30.


Noise Is Not Error: Detecting Parametric Heterogeneity Between Epidemiologic Time Series.

Romero-Severson EO, Ribeiro RM, Castro M.

Front Microbiol. 2018 Jul 12;9:1529. doi: 10.3389/fmicb.2018.01529. eCollection 2018.


Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection.

Song H, Giorgi EE, Ganusov VV, Cai F, Athreya G, Yoon H, Carja O, Hora B, Hraber P, Romero-Severson E, Jiang C, Li X, Wang S, Li H, Salazar-Gonzalez JF, Salazar MG, Goonetilleke N, Keele BF, Montefiori DC, Cohen MS, Shaw GM, Hahn BH, McMichael AJ, Haynes BF, Korber B, Bhattacharya T, Gao F.

Nat Commun. 2018 May 15;9(1):1928. doi: 10.1038/s41467-018-04217-5.


Numerical optimal control for HIV prevention with dynamic budget allocation.

Gromov D, Bulla I, Silvia Serea O, Romero-Severson EO.

Math Med Biol. 2018 Dec 5;35(4):469-491. doi: 10.1093/imammb/dqx015.


Donor-Recipient Identification in Para- and Poly-phyletic Trees Under Alternative HIV-1 Transmission Hypotheses Using Approximate Bayesian Computation.

Romero-Severson EO, Bulla I, Hengartner N, Bártolo I, Abecasis A, Azevedo-Pereira JM, Taveira N, Leitner T.

Genetics. 2017 Nov;207(3):1089-1101. doi: 10.1534/genetics.117.300284. Epub 2017 Sep 14.


Phylodynamic Inference across Epidemic Scales.

Volz EM, Romero-Severson E, Leitner T.

Mol Biol Evol. 2017 May 1;34(5):1276-1288. doi: 10.1093/molbev/msx077.


Inference of Transmission Network Structure from HIV Phylogenetic Trees.

Giardina F, Romero-Severson EO, Albert J, Britton T, Leitner T.

PLoS Comput Biol. 2017 Jan 13;13(1):e1005316. doi: 10.1371/journal.pcbi.1005316. eCollection 2017 Jan.


Phylogenetically resolving epidemiologic linkage.

Romero-Severson EO, Bulla I, Leitner T.

Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):2690-5. doi: 10.1073/pnas.1522930113. Epub 2016 Feb 22.


Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population.

Immonen TT, Conway JM, Romero-Severson EO, Perelson AS, Leitner T.

PLoS Comput Biol. 2015 Dec 22;11(12):e1004625. doi: 10.1371/journal.pcbi.1004625. eCollection 2015 Dec.


Trends of HIV-1 incidence with credible intervals in Sweden 2002-09 reconstructed using a dynamic model of within-patient IgG growth.

Romero-Severson EO, Lee Petrie C, Ionides E, Albert J, Leitner T.

Int J Epidemiol. 2015 Jun;44(3):998-1006. doi: 10.1093/ije/dyv034. Epub 2015 Jul 10.


Dynamic Variation in Sexual Contact Rates in a Cohort of HIV-Negative Gay Men.

Romero-Severson EO, Volz E, Koopman JS, Leitner T, Ionides EL.

Am J Epidemiol. 2015 Aug 1;182(3):255-62. doi: 10.1093/aje/kwv044. Epub 2015 May 20.


Timing and order of transmission events is not directly reflected in a pathogen phylogeny.

Romero-Severson E, Skar H, Bulla I, Albert J, Leitner T.

Mol Biol Evol. 2014 Sep;31(9):2472-82. doi: 10.1093/molbev/msu179. Epub 2014 May 29.


A generating function approach to HIV transmission with dynamic contact rates.

Romero-Severson EO, Meadors GD, Volz EM.

Math Model Nat Phenom. 2014 Mar 1;9(2):121-135. Epub 2014 Apr 24.


HIV-1 transmission during early infection in men who have sex with men: a phylodynamic analysis.

Volz EM, Ionides E, Romero-Severson EO, Brandt MG, Mokotoff E, Koopman JS.

PLoS Med. 2013 Dec;10(12):e1001568; discussion e1001568. doi: 10.1371/journal.pmed.1001568. Epub 2013 Dec 10.


Episodic HIV Risk Behavior Can Greatly Amplify HIV Prevalence and the Fraction of Transmissions from Acute HIV Infection.

Zhang X, Zhong L, Romero-Severson E, Alam SJ, Henry CJ, Volz EM, Koopman JS.

Stat Commun Infect Dis. 2012 Nov 1;4(1). pii: 1041.


Acute-stage transmission of HIV: effect of volatile contact rates.

Romero-Severson EO, Alam SJ, Volz E, Koopman J.

Epidemiology. 2013 Jul;24(4):516-21. doi: 10.1097/EDE.0b013e318294802e.


Heterogeneity in Number and Type of Sexual Contacts in a Gay Urban Cohort.

Romero-Severson EO, Alam SJ, Volz EM, Koopman JS.

Stat Commun Infect Dis. 2012 Nov 4;4(1). pii: 4.


Detectable signals of episodic risk effects on acute HIV transmission: strategies for analyzing transmission systems using genetic data.

Alam SJ, Zhang X, Romero-Severson EO, Henry C, Zhong L, Volz EM, Brenner BG, Koopman JS.

Epidemics. 2013 Mar;5(1):44-55. doi: 10.1016/j.epidem.2012.11.003. Epub 2012 Nov 23.


Dynamic sex roles among men who have sex with men and transmissions from primary HIV infection.

Alam SJ, Romero-Severson E, Kim JH, Emond G, Koopman JS.

Epidemiology. 2010 Sep;21(5):669-75. doi: 10.1097/EDE.0b013e3181e9e901.


Semidominant mutations in reduced epidermal fluorescence 4 reduce phenylpropanoid content in Arabidopsis.

Stout J, Romero-Severson E, Ruegger MO, Chapple C.

Genetics. 2008 Apr;178(4):2237-51. doi: 10.1534/genetics.107.083881.

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