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Items: 14

1.

Observational Study of PD-L1, TGF-╬▓, and Immune Cell Infiltrates in Hepatocellular Carcinoma.

Ihling C, Naughton B, Zhang Y, Rolfe PA, Frick-Krieger E, Terracciano LM, Dussault I.

Front Med (Lausanne). 2019 Feb 8;6:15. doi: 10.3389/fmed.2019.00015. eCollection 2019.

2.

Combination Therapy with NHS-muIL12 and Avelumab (anti-PD-L1) Enhances Antitumor Efficacy in Preclinical Cancer Models.

Xu C, Zhang Y, Rolfe PA, Hernández VM, Guzman W, Kradjian G, Marelli B, Qin G, Qi J, Wang H, Yu H, Tighe R, Lo KM, English JM, Radvanyi L, Lan Y.

Clin Cancer Res. 2017 Oct 1;23(19):5869-5880. doi: 10.1158/1078-0432.CCR-17-0483. Epub 2017 Jul 5.

3.

Development and evaluation of a panel of filovirus sequence capture probes for pathogen detection by next-generation sequencing.

Koehler JW, Hall AT, Rolfe PA, Honko AN, Palacios GF, Fair JN, Muyembe JJ, Mulembekani P, Schoepp RJ, Adesokan A, Minogue TD.

PLoS One. 2014 Sep 10;9(9):e107007. doi: 10.1371/journal.pone.0107007. eCollection 2014.

4.

Rapid resistome fingerprinting and clonal lineage profiling of carbapenem-resistant Klebsiella pneumoniae isolates by targeted next-generation sequencing.

Arena F, Rolfe PA, Doran G, Conte V, Gruszka S, Clarke T, Adesokan Y, Giani T, Rossolini GM.

J Clin Microbiol. 2014 Mar;52(3):987-90. doi: 10.1128/JCM.03247-13. Epub 2014 Jan 8.

5.

A multi-parametric flow cytometric assay to analyze DNA-protein interactions.

Arbab M, Mahony S, Cho H, Chick JM, Rolfe PA, van Hoff JP, Morris VW, Gygi SP, Maas RL, Gifford DK, Sherwood RI.

Nucleic Acids Res. 2013 Jan;41(2):e38. doi: 10.1093/nar/gks1034. Epub 2012 Nov 11.

6.

Ruler arrays reveal haploid genomic structural variation.

Rolfe PA, Bernstein DA, Grisafi P, Fink GR, Gifford DK.

PLoS One. 2012;7(8):e43210. doi: 10.1371/journal.pone.0043210. Epub 2012 Aug 27.

7.

ReadDB provides efficient storage for mapped short reads.

Rolfe PA, Gifford DK.

BMC Bioinformatics. 2011 Jul 7;12:278. doi: 10.1186/1471-2105-12-278.

8.

Control of transcription by cell size.

Wu CY, Rolfe PA, Gifford DK, Fink GR.

PLoS Biol. 2010 Nov 2;8(11):e1000523. doi: 10.1371/journal.pbio.1000523.

9.

Genotype to phenotype: a complex problem.

Dowell RD, Ryan O, Jansen A, Cheung D, Agarwala S, Danford T, Bernstein DA, Rolfe PA, Heisler LE, Chin B, Nislow C, Giaever G, Phillips PC, Fink GR, Gifford DK, Boone C.

Science. 2010 Apr 23;328(5977):469. doi: 10.1126/science.1189015.

10.

Tissue-specific transcriptional regulation has diverged significantly between human and mouse.

Odom DT, Dowell RD, Jacobsen ES, Gordon W, Danford TW, MacIsaac KD, Rolfe PA, Conboy CM, Gifford DK, Fraenkel E.

Nat Genet. 2007 Jun;39(6):730-2. Epub 2007 May 21.

11.

Core transcriptional regulatory circuitry in human hepatocytes.

Odom DT, Dowell RD, Jacobsen ES, Nekludova L, Rolfe PA, Danford TW, Gifford DK, Fraenkel E, Bell GI, Young RA.

Mol Syst Biol. 2006;2:2006.0017. Epub 2006 May 2.

12.

Genome-wide map of nucleosome acetylation and methylation in yeast.

Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI, Bell GW, Walker K, Rolfe PA, Herbolsheimer E, Zeitlinger J, Lewitter F, Gifford DK, Young RA.

Cell. 2005 Aug 26;122(4):517-27.

13.

Transcriptional regulatory code of a eukaryotic genome.

Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW, Hannett NM, Tagne JB, Reynolds DB, Yoo J, Jennings EG, Zeitlinger J, Pokholok DK, Kellis M, Rolfe PA, Takusagawa KT, Lander ES, Gifford DK, Fraenkel E, Young RA.

Nature. 2004 Sep 2;431(7004):99-104.

14.

Control of pancreas and liver gene expression by HNF transcription factors.

Odom DT, Zizlsperger N, Gordon DB, Bell GW, Rinaldi NJ, Murray HL, Volkert TL, Schreiber J, Rolfe PA, Gifford DK, Fraenkel E, Bell GI, Young RA.

Science. 2004 Feb 27;303(5662):1378-81.

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