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Items: 37

1.

CRK2 and C-terminal Phosphorylation of NADPH Oxidase RBOHD Regulate Reactive Oxygen Species Production in Arabidopsis.

Kimura S, Hunter K, Vaahtera L, Tran HC, Citterico M, Vaattovaara A, Rokka A, Stolze SC, Harzen A, Meissner L, Wilkens MMT, Hamann T, Toyota M, Nakagami H, Wrzaczek M.

Plant Cell. 2020 Feb 7. pii: tpc.00525.2019. doi: 10.1105/tpc.19.00525. [Epub ahead of print]

2.

Data-Independent Acquisition Mass Spectrometry in Metaproteomics of Gut Microbiota-Implementation and Computational Analysis.

Aakko J, Pietilä S, Suomi T, Mahmoudian M, Toivonen R, Kouvonen P, Rokka A, Hänninen A, Elo LL.

J Proteome Res. 2020 Jan 3;19(1):432-436. doi: 10.1021/acs.jproteome.9b00606. Epub 2019 Dec 4.

PMID:
31755272
3.

CRK2 Enhances Salt Tolerance by Regulating Callose Deposition in Connection with PLDα1.

Hunter K, Kimura S, Rokka A, Tran HC, Toyota M, Kukkonen JP, Wrzaczek M.

Plant Physiol. 2019 Aug;180(4):2004-2021. doi: 10.1104/pp.19.00560. Epub 2019 May 22.

4.

GGA2 and RAB13 promote activity-dependent β1-integrin recycling.

Sahgal P, Alanko J, Icha J, Paatero I, Hamidi H, Arjonen A, Pietilä M, Rokka A, Ivaska J.

J Cell Sci. 2019 Jun 7;132(11). pii: jcs233387. doi: 10.1242/jcs.233387.

5.

A new method for measuring thyroid hormones using nano-LC-MS/MS.

Ruuskanen S, Hsu BY, Heinonen A, Vainio M, Darras VM, Sarraude T, Rokka A.

J Chromatogr B Analyt Technol Biomed Life Sci. 2018 Sep 1;1093-1094:24-30. doi: 10.1016/j.jchromb.2018.06.052. Epub 2018 Jun 25.

PMID:
29980100
6.

Quantitative proteomic characterization and comparison of T helper 17 and induced regulatory T cells.

Mohammad I, Nousiainen K, Bhosale SD, Starskaia I, Moulder R, Rokka A, Cheng F, Mohanasundaram P, Eriksson JE, Goodlett DR, Lähdesmäki H, Chen Z.

PLoS Biol. 2018 May 31;16(5):e2004194. doi: 10.1371/journal.pbio.2004194. eCollection 2018 May.

7.

Mass spectrometric identification of diagnostic markers for chronic prostatitis in seminal plasma by analysis of seminal plasma protein clinical samples.

Rokka A, Mehik A, Tonttila P, Vaarala M.

Cell Mol Biol (Noisy-le-grand). 2017 Aug 15;63(7):35-39. doi: 10.14715/cmb/2017.63.7.6.

PMID:
28838337
8.

A systematic review and meta-analysis of the role of Helicobacter pylori eradication in preventing gastric cancer.

Rokkas T, Rokka A, Portincasa P.

Ann Gastroenterol. 2017;30(4):414-423. doi: 10.20524/aog.2017.0144. Epub 2017 Apr 7.

9.

Orphan G protein-coupled receptor GPRC5A modulates integrin β1-mediated epithelial cell adhesion.

Bulanova DR, Akimov YA, Rokka A, Laajala TD, Aittokallio T, Kouvonen P, Pellinen T, Kuznetsov SG.

Cell Adh Migr. 2017 Sep 3;11(5-6):434-446. doi: 10.1080/19336918.2016.1245264. Epub 2017 Feb 6.

10.

Brief Isoflurane Anesthesia Produces Prominent Phosphoproteomic Changes in the Adult Mouse Hippocampus.

Kohtala S, Theilmann W, Suomi T, Wigren HK, Porkka-Heiskanen T, Elo LL, Rokka A, Rantamäki T.

ACS Chem Neurosci. 2016 Jun 15;7(6):749-56. doi: 10.1021/acschemneuro.6b00002. Epub 2016 Apr 28.

PMID:
27074656
11.

Epithelial Microvesicles Promote an Inflammatory Phenotype in Fibroblasts.

Bi J, Koivisto L, Owen G, Huang P, Wang Z, Shen Y, Bi L, Rokka A, Haapasalo M, Heino J, Häkkinen L, Larjava HS.

J Dent Res. 2016 Jun;95(6):680-8. doi: 10.1177/0022034516633172. Epub 2016 Feb 24.

PMID:
26912223
12.

Relevance Rank Platform (RRP) for Functional Filtering of High Content Protein-Protein Interaction Data.

Pokharel YR, Saarela J, Szwajda A, Rupp C, Rokka A, Lal Kumar Karna S, Teittinen K, Corthals G, Kallioniemi O, Wennerberg K, Aittokallio T, Westermarck J.

Mol Cell Proteomics. 2015 Dec;14(12):3274-83. doi: 10.1074/mcp.M115.050773. Epub 2015 Oct 23.

13.

Optimization of Statistical Methods Impact on Quantitative Proteomics Data.

Pursiheimo A, Vehmas AP, Afzal S, Suomi T, Chand T, Strauss L, Poutanen M, Rokka A, Corthals GL, Elo LL.

J Proteome Res. 2015 Oct 2;14(10):4118-26. doi: 10.1021/acs.jproteome.5b00183. Epub 2015 Sep 8.

PMID:
26321463
14.

Keratinocyte Microvesicles Regulate the Expression of Multiple Genes in Dermal Fibroblasts.

Huang P, Bi J, Owen GR, Chen W, Rokka A, Koivisto L, Heino J, Häkkinen L, Larjava H.

J Invest Dermatol. 2015 Dec;135(12):3051-3059. doi: 10.1038/jid.2015.320. Epub 2015 Aug 19.

15.

The role of circulating microRNAs as novel biomarkers in diagnosing colorectal cancer: a meta-analysis.

Rokkas T, Kothonas F, Rokka A, Koukoulis G, Symvoulakis E.

Eur J Gastroenterol Hepatol. 2015 Jul;27(7):819-25. doi: 10.1097/MEG.0000000000000363.

PMID:
25856691
16.

The L1TD1 protein interactome reveals the importance of post-transcriptional regulation in human pluripotency.

Emani MR, Närvä E, Stubb A, Chakroborty D, Viitala M, Rokka A, Rahkonen N, Moulder R, Denessiouk K, Trokovic R, Lund R, Elo LL, Lahesmaa R.

Stem Cell Reports. 2015 Mar 10;4(3):519-28. doi: 10.1016/j.stemcr.2015.01.014. Epub 2015 Feb 19.

17.

Proprotein convertase FURIN constrains Th2 differentiation and is critical for host resistance against Toxoplasma gondii.

Oksanen A, Aittomäki S, Jankovic D, Ortutay Z, Pulkkinen K, Hämäläinen S, Rokka A, Corthals GL, Watford WT, Junttila I, O'Shea JJ, Pesu M.

J Immunol. 2014 Dec 1;193(11):5470-9. doi: 10.4049/jimmunol.1401629. Epub 2014 Oct 29.

18.

Posttranslational modifications of FERREDOXIN-NADP+ OXIDOREDUCTASE in Arabidopsis chloroplasts.

Lehtimäki N, Koskela MM, Dahlström KM, Pakula E, Lintala M, Scholz M, Hippler M, Hanke GT, Rokka A, Battchikova N, Salminen TA, Mulo P.

Plant Physiol. 2014 Dec;166(4):1764-76. doi: 10.1104/pp.114.249094. Epub 2014 Oct 9.

19.

Peroxisomal membrane channel Pxmp2 in the mammary fat pad is essential for stromal lipid homeostasis and for development of mammary gland epithelium in mice.

Vapola MH, Rokka A, Sormunen RT, Alhonen L, Schmitz W, Conzelmann E, Wärri A, Grunau S, Antonenkov VD, Hiltunen JK.

Dev Biol. 2014 Jul 1;391(1):66-80. doi: 10.1016/j.ydbio.2014.03.022. Epub 2014 Apr 12.

20.

Concanavalin-A induces granulosa cell death and inhibits FSH-mediated follicular growth and ovarian maturation in female rats.

Velasquez EV, Ríos M, Ortiz ME, Lizama C, Nuñez E, Abramovich D, Orge F, Oliva B, Orellana R, Villalon M, Moreno RD, Tesone M, Rokka A, Corthals G, Croxatto HB, Parborell F, Owen GI.

Endocrinology. 2013 May;154(5):1885-96. doi: 10.1210/en.2012-1945. Epub 2013 Mar 20.

PMID:
23515285
21.

Cathepsin D deficiency induces cytoskeletal changes and affects cell migration pathways in the brain.

Koch S, Scifo E, Rokka A, Trippner P, Lindfors M, Korhonen R, Corthals GL, Virtanen I, Lalowski M, Tyynelä J.

Neurobiol Dis. 2013 Feb;50:107-19. doi: 10.1016/j.nbd.2012.10.004. Epub 2012 Oct 12.

PMID:
23069676
22.

The thylakoid membrane proteome of two marine diatoms outlines both diatom-specific and species-specific features of the photosynthetic machinery.

Grouneva I, Rokka A, Aro EM.

J Proteome Res. 2011 Dec 2;10(12):5338-53. doi: 10.1021/pr200600f. Epub 2011 Nov 9.

PMID:
22017178
23.

Absence of ataxin-3 leads to enhanced stress response in C. elegans.

Rodrigues AJ, Neves-Carvalho A, Teixeira-Castro A, Rokka A, Corthals G, Logarinho E, Maciel P.

PLoS One. 2011 Apr 19;6(4):e18512. doi: 10.1371/journal.pone.0018512.

24.

Identification of miR-193b targets in breast cancer cells and systems biological analysis of their functional impact.

Leivonen SK, Rokka A, Ostling P, Kohonen P, Corthals GL, Kallioniemi O, Perälä M.

Mol Cell Proteomics. 2011 Jul;10(7):M110.005322. doi: 10.1074/mcp.M110.005322. Epub 2011 Apr 21.

25.

Thylakoid phosphoproteins: identification of phosphorylation sites.

Rokka A, Aro EM, Vener AV.

Methods Mol Biol. 2011;684:171-86. doi: 10.1007/978-1-60761-925-3_15.

PMID:
20960130
26.

Murine cathepsin D deficiency is associated with dysmyelination/myelin disruption and accumulation of cholesteryl esters in the brain.

Mutka AL, Haapanen A, Käkelä R, Lindfors M, Wright AK, Inkinen T, Hermansson M, Rokka A, Corthals G, Jauhiainen M, Gillingwater TH, Ikonen E, Tyynelä J.

J Neurochem. 2010 Jan;112(1):193-203. doi: 10.1111/j.1471-4159.2009.06440.x. Epub 2009 Oct 20.

27.

ATX-3, CDC-48 and UBXN-5: a new trimolecular complex in Caenorhabditis elegans.

Rodrigues AJ, Neves-Carvalho A, Ferro A, Rokka A, Corthals G, Logarinho E, Maciel P.

Biochem Biophys Res Commun. 2009 Sep 4;386(4):575-81. doi: 10.1016/j.bbrc.2009.06.092. Epub 2009 Jun 21.

PMID:
19545544
28.

Pxmp2 is a channel-forming protein in Mammalian peroxisomal membrane.

Rokka A, Antonenkov VD, Soininen R, Immonen HL, Pirilä PL, Bergmann U, Sormunen RT, Weckström M, Benz R, Hiltunen JK.

PLoS One. 2009;4(4):e5090. doi: 10.1371/journal.pone.0005090. Epub 2009 Apr 7.

29.

Solute traffic across mammalian peroxisomal membrane--single channel conductance monitoring reveals pore-forming activities in peroxisomes.

Antonenkov VD, Rokka A, Sormunen RT, Benz R, Hiltunen JK.

Cell Mol Life Sci. 2005 Dec;62(23):2886-95.

PMID:
16314931
30.

Synthesis and assembly of thylakoid protein complexes: multiple assembly steps of photosystem II.

Rokka A, Suorsa M, Saleem A, Battchikova N, Aro EM.

Biochem J. 2005 May 15;388(Pt 1):159-68.

31.

Dynamics of photosystem II: a proteomic approach to thylakoid protein complexes.

Aro EM, Suorsa M, Rokka A, Allahverdiyeva Y, Paakkarinen V, Saleem A, Battchikova N, Rintamäki E.

J Exp Bot. 2005 Jan;56(411):347-56. Epub 2004 Nov 29. Review.

PMID:
15569703
32.

Determination of phosphoproteins in higher plant thylakoids.

Aro EM, Rokka A, Vener AV.

Methods Mol Biol. 2004;274:271-85.

PMID:
15187286
33.

Rubisco activase: an enzyme with a temperature-dependent dual function?

Rokka A, Zhang L, Aro EM.

Plant J. 2001 Feb;25(4):463-71.

34.
35.

A cyclophilin-regulated PP2A-like protein phosphatase in thylakoid membranes of plant chloroplasts

Vener AV, Rokka A, Fulgosi H, Andersson B, Herrmann RG.

Biochemistry. 2000 Feb 29;39(8):2130. No abstract available.

PMID:
10684663
36.

A cyclophilin-regulated PP2A-like protein phosphatase in thylakoid membranes of plant chloroplasts.

Vener AV, Rokka A, Fulgosi H, Andersson B, Herrmann RG.

Biochemistry. 1999 Nov 9;38(45):14955-65. Erratum in: Biochemistry 2000 Feb 29;39(8):2130.

PMID:
10555977
37.

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