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Items: 49

1.

Abundance, morphology and chemical composition of microplastics in sand and sediments from a protected coastal area: The Mar Menor lagoon (SE Spain).

Bayo J, Rojo D, Olmos S.

Environ Pollut. 2019 Sep;252(Pt B):1357-1366. doi: 10.1016/j.envpol.2019.06.024. Epub 2019 Jun 19.

PMID:
31254893
2.

A Virtual Reality Training Application for Adults With Asperger's Syndrome.

Rojo D, Mayor J, Rueda JJG, Raya L, Potel M.

IEEE Comput Graph Appl. 2019 Mar-Apr;39(2):104-111. doi: 10.1109/MCG.2018.2884272.

PMID:
30908187
3.

Canine Trypanosoma cruzi infection in the Bolivian Chaco.

Gabrielli S, Spinicci M, Macchioni F, Rojo D, Totino V, Rojas P, Roselli M, Gamboa H, Cancrini G, Bartoloni A.

Parasit Vectors. 2018 Dec 12;11(1):632. doi: 10.1186/s13071-018-3247-0.

4.

Metabolomic-Based Methods in Diagnosis and Monitoring Infection Progression.

Fernández-García M, Rojo D, Rey-Stolle F, García A, Barbas C.

Exp Suppl. 2018;109:283-315. doi: 10.1007/978-3-319-74932-7_7. Review.

PMID:
30535603
5.

Metabolomics Analysis of Leishmania by Capillary Electrophoresis and Mass Spectrometry.

Rojo D, Barbas C, López-Gonzálvez Á.

Methods Mol Biol. 2019;1859:253-260. doi: 10.1007/978-1-4939-8757-3_14.

PMID:
30421234
6.

Bioprospecting Reveals Class III ω-Transaminases Converting Bulky Ketones and Environmentally Relevant Polyamines.

Coscolín C, Katzke N, García-Moyano A, Navarro-Fernández J, Almendral D, Martínez-Martínez M, Bollinger A, Bargiela R, Gertler C, Chernikova TN, Rojo D, Barbas C, Tran H, Golyshina OV, Koch R, Yakimov MM, Bjerga GEK, Golyshin PN, Jaeger KE, Ferrer M.

Appl Environ Microbiol. 2019 Jan 9;85(2). pii: e02404-18. doi: 10.1128/AEM.02404-18. Print 2019 Jan 15.

7.

Flow Cytometry Has a Significant Impact on the Cellular Metabolome.

Binek A, Rojo D, Godzien J, Rupérez FJ, Nuñez V, Jorge I, Ricote M, Vázquez J, Barbas C.

J Proteome Res. 2019 Jan 4;18(1):169-181. doi: 10.1021/acs.jproteome.8b00472. Epub 2018 Nov 2.

PMID:
30362351
8.

Hymenolepis nana-An Emerging Intestinal Parasite Associated with Anemia in School Children from the Bolivian Chaco.

Spinicci M, Macchioni F, Gabrielli S, Rojo D, Gamboa H, Villagrán AL, Vallejos Y, Strohmeyer M, Roselli M, Cancrini G, Olliaro P, Montresor A, Bartoloni A.

Am J Trop Med Hyg. 2018 Dec;99(6):1598-1601. doi: 10.4269/ajtmh.18-0397.

PMID:
30298806
9.

Interplay between gut microbiota metabolism and inflammation in HIV infection.

Vázquez-Castellanos JF, Serrano-Villar S, Jiménez-Hernández N, Soto Del Rio MD, Gayo S, Rojo D, Ferrer M, Barbas C, Moreno S, Estrada V, Rattei T, Latorre A, Moya A, Gosalbes MJ.

ISME J. 2018 Aug;12(8):1964-1976. doi: 10.1038/s41396-018-0151-8. Epub 2018 May 23.

10.

Effects of HIV, antiretroviral therapy and prebiotics on the active fraction of the gut microbiota.

Deusch S, Serrano-Villar S, Rojo D, Martínez-Martínez M, Bargiela R, Vázquez-Castellanos JF, Sainz T, Barbas C, Moya A, Moreno S, Gosalbes MJ, Estrada V, Seifert J, Ferrer M.

AIDS. 2018 Jun 19;32(10):1229-1237. doi: 10.1097/QAD.0000000000001831.

PMID:
29683848
11.

Scaling down of a deworming programme among school-age children after a thirty-year successful intervention in the Bolivian Chaco.

Spinicci M, Macchioni F, Rojo D, Gamboa H, Villagrán AL, Vallejos Y, Strohmeyer M, Roselli M, Gabrielli S, Cancrini G, Monasterio J, Castellanos P, Paredes GA, Maury S, Zárate A, Rocabado R, Olliaro P, Montresor A, Bartoloni A.

Trop Med Int Health. 2018 Jun;23(6):616-621. doi: 10.1111/tmi.13058. Epub 2018 May 2.

12.

Acellular derivatives of mesenchymal stem cells prevent peritoneal adhesions in an animal model.

Rojo D, Conget P.

J Surg Res. 2018 Mar;223:198-206. doi: 10.1016/j.jss.2017.11.018. Epub 2017 Dec 1.

PMID:
29433874
13.

Complementary Methodologies To Investigate Human Gut Microbiota in Host Health, Working towards Integrative Systems Biology.

Méndez-García C, Barbas C, Ferrer M, Rojo D.

J Bacteriol. 2018 Jan 10;200(3). pii: e00376-17. doi: 10.1128/JB.00376-17. Print 2018 Feb 1. Review.

14.

Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT.

Golyshina OV, Tran H, Reva ON, Lemak S, Yakunin AF, Goesmann A, Nechitaylo TY, LaCono V, Smedile F, Slesarev A, Rojo D, Barbas C, Ferrer M, Yakimov MM, Golyshin PN.

Sci Rep. 2017 Jun 16;7(1):3682. doi: 10.1038/s41598-017-03904-5.

15.

Phenotyping of gut microbiota: Focus on capillary electrophoresis.

Ferrer M, Raczkowska BA, Martínez-Martínez M, Barbas C, Rojo D.

Electrophoresis. 2017 Sep;38(18):2275-2286. doi: 10.1002/elps.201700056. Epub 2017 Jul 10. Review.

PMID:
28605027
16.

Exploring the human microbiome from multiple perspectives: factors altering its composition and function.

Rojo D, Méndez-García C, Raczkowska BA, Bargiela R, Moya A, Ferrer M, Barbas C.

FEMS Microbiol Rev. 2017 Jul 1;41(4):453-478. doi: 10.1093/femsre/fuw046. Review.

17.

The effects of prebiotics on microbial dysbiosis, butyrate production and immunity in HIV-infected subjects.

Serrano-Villar S, Vázquez-Castellanos JF, Vallejo A, Latorre A, Sainz T, Ferrando-Martínez S, Rojo D, Martínez-Botas J, Del Romero J, Madrid N, Leal M, Mosele JI, Motilva MJ, Barbas C, Ferrer M, Moya A, Moreno S, Gosalbes MJ, Estrada V.

Mucosal Immunol. 2017 Sep;10(5):1279-1293. doi: 10.1038/mi.2016.122. Epub 2016 Dec 21.

PMID:
28000678
18.

Insights into the degradation capacities of Amycolatopsis tucumanensis DSM 45259 guided by microarray data.

Bourguignon N, Bargiela R, Rojo D, Chernikova TN, de Rodas SA, García-Cantalejo J, Näther DJ, Golyshin PN, Barbas C, Ferrero M, Ferrer M.

World J Microbiol Biotechnol. 2016 Dec;32(12):201. Epub 2016 Oct 26.

PMID:
27785708
19.

Antibiotic use and microbiome function.

Ferrer M, Méndez-García C, Rojo D, Barbas C, Moya A.

Biochem Pharmacol. 2017 Jun 15;134:114-126. doi: 10.1016/j.bcp.2016.09.007. Epub 2016 Sep 15. Review.

PMID:
27641814
20.

Gut Bacteria Metabolism Impacts Immune Recovery in HIV-infected Individuals.

Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Bargiela R, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Seifert J, Barbas C, Moya A, Ferrer M.

EBioMedicine. 2016 Jun;8:203-216. doi: 10.1016/j.ebiom.2016.04.033. Epub 2016 Apr 27.

21.

HIV infection results in metabolic alterations in the gut microbiota different from those induced by other diseases.

Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Margolles A, Seifert J, Barbas C, Moya A, Ferrer M.

Sci Rep. 2016 May 18;6:26192. doi: 10.1038/srep26192.

22.

Effects of contextual support on preschoolers' accented speech comprehension.

Creel SC, Rojo DP, Paullada AN.

J Exp Child Psychol. 2016 Jun;146:156-80. doi: 10.1016/j.jecp.2016.01.018. Epub 2016 Mar 4.

PMID:
26950507
23.

Differential Gene Expression and Infection Profiles of Cutaneous and Mucosal Leishmania braziliensis Isolates from the Same Patient.

Alves-Ferreira EV, Toledo JS, De Oliveira AH, Ferreira TR, Ruy PC, Pinzan CF, Santos RF, Boaventura V, Rojo D, López-Gonzálvez Á, Rosa JC, Barbas C, Barral-Netto M, Barral A, Cruz AK.

PLoS Negl Trop Dis. 2015 Sep 14;9(9):e0004018. doi: 10.1371/journal.pntd.0004018. eCollection 2015.

24.

Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation.

Bargiela R, Herbst FA, Martínez-Martínez M, Seifert J, Rojo D, Cappello S, Genovese M, Crisafi F, Denaro R, Chernikova TN, Barbas C, von Bergen M, Yakimov MM, Ferrer M, Golyshin PN.

Proteomics. 2015 Oct;15(20):3508-20. doi: 10.1002/pmic.201400614. Epub 2015 Aug 27.

25.

A Multiplatform Metabolomic Approach to the Basis of Antimonial Action and Resistance in Leishmania infantum.

Rojo D, Canuto GA, Castilho-Martins EA, Tavares MF, Barbas C, López-Gonzálvez Á, Rivas L.

PLoS One. 2015 Jul 10;10(7):e0130675. doi: 10.1371/journal.pone.0130675. eCollection 2015.

26.

Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature.

Bargiela R, Mapelli F, Rojo D, Chouaia B, Tornés J, Borin S, Richter M, Del Pozo MV, Cappello S, Gertler C, Genovese M, Denaro R, Martínez-Martínez M, Fodelianakis S, Amer RA, Bigazzi D, Han X, Chen J, Chernikova TN, Golyshina OV, Mahjoubi M, Jaouanil A, Benzha F, Magagnini M, Hussein E, Al-Horani F, Cherif A, Blaghen M, Abdel-Fattah YR, Kalogerakis N, Barbas C, Malkawi HI, Golyshin PN, Yakimov MM, Daffonchio D, Ferrer M.

Sci Rep. 2015 Jun 29;5:11651. doi: 10.1038/srep11651.

27.

Elemental sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon.

Sorokin DY, Kublanov IV, Gavrilov SN, Rojo D, Roman P, Golyshin PN, Slepak VZ, Smedile F, Ferrer M, Messina E, La Cono V, Yakimov MM.

ISME J. 2016 Jan;10(1):240-52. doi: 10.1038/ismej.2015.79. Epub 2015 May 15.

28.

Participation of non-neuronal muscarinic receptors in the effect of carbachol with paclitaxel on human breast adenocarcinoma cells. Roles of nitric oxide synthase and arginase.

Español AJ, Salem A, Rojo D, Sales ME.

Int Immunopharmacol. 2015 Nov;29(1):87-92. doi: 10.1016/j.intimp.2015.03.018. Epub 2015 Mar 24.

PMID:
25812766
29.

Clostridium difficile heterogeneously impacts intestinal community architecture but drives stable metabolome responses.

Rojo D, Gosalbes MJ, Ferrari R, Pérez-Cobas AE, Hernández E, Oltra R, Buesa J, Latorre A, Barbas C, Ferrer M, Moya A.

ISME J. 2015 Oct;9(10):2206-20. doi: 10.1038/ismej.2015.32. Epub 2015 Mar 10.

30.

Ranking the impact of human health disorders on gut metabolism: systemic lupus erythematosus and obesity as study cases.

Rojo D, Hevia A, Bargiela R, López P, Cuervo A, González S, Suárez A, Sánchez B, Martínez-Martínez M, Milani C, Ventura M, Barbas C, Moya A, Suárez A, Margolles A, Ferrer M.

Sci Rep. 2015 Feb 6;5:8310. doi: 10.1038/srep08310.

31.

Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data.

Tobalina L, Bargiela R, Pey J, Herbst FA, Lores I, Rojo D, Barbas C, Peláez AI, Sánchez J, von Bergen M, Seifert J, Ferrer M, Planes FJ.

Bioinformatics. 2015 Jun 1;31(11):1771-9. doi: 10.1093/bioinformatics/btv036. Epub 2015 Jan 23.

PMID:
25618865
32.

Understanding the antimicrobial mechanism of TiO₂-based nanocomposite films in a pathogenic bacterium.

Kubacka A, Diez MS, Rojo D, Bargiela R, Ciordia S, Zapico I, Albar JP, Barbas C, Martins dos Santos VA, Fernández-García M, Ferrer M.

Sci Rep. 2014 Feb 19;4:4134. doi: 10.1038/srep04134.

33.

Microbial life in the Lake Medee, the largest deep-sea salt-saturated formation.

Yakimov MM, La Cono V, Slepak VZ, La Spada G, Arcadi E, Messina E, Borghini M, Monticelli LS, Rojo D, Barbas C, Golyshina OV, Ferrer M, Golyshin PN, Giuliano L.

Sci Rep. 2013 Dec 19;3:3554. doi: 10.1038/srep03554.

34.

Pathway analysis reveals common pro-survival mechanisms of metyrapone and carbenoxolone after traumatic brain injury.

Hellmich HL, Rojo DR, Micci MA, Sell SL, Boone DR, Crookshanks JM, DeWitt DS, Masel BE, Prough DS.

PLoS One. 2013;8(1):e53230. doi: 10.1371/journal.pone.0053230. Epub 2013 Jan 9.

35.

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach.

Pérez-Cobas AE, Gosalbes MJ, Friedrichs A, Knecht H, Artacho A, Eismann K, Otto W, Rojo D, Bargiela R, von Bergen M, Neulinger SC, Däumer C, Heinsen FA, Latorre A, Barbas C, Seifert J, dos Santos VM, Ott SJ, Ferrer M, Moya A.

Gut. 2013 Nov;62(11):1591-601. doi: 10.1136/gutjnl-2012-303184. Epub 2012 Dec 12.

36.

LC-MS metabolomics of polar compounds.

Rojo D, Barbas C, Rupérez FJ.

Bioanalysis. 2012 Jun;4(10):1235-43. doi: 10.4155/bio.12.100. Review.

PMID:
22651567
37.

Influence of stochastic gene expression on the cell survival rheostat after traumatic brain injury.

Rojo DR, Prough DS, Falduto MT, Boone DR, Micci MA, Kahrig KM, Crookshanks JM, Jimenez A, Uchida T, Cowart JC, Hawkins BE, Avila M, DeWitt DS, Hellmich HL.

PLoS One. 2011;6(8):e23111. doi: 10.1371/journal.pone.0023111. Epub 2011 Aug 11.

38.

Morphometry of the canine intestine with reference to the use of double balloon endoscopy.

López Albors O, Rojo D, Sarriá R, Soria F, Pérez Cuadrado E, Latorre R.

Vet J. 2011 Oct;190(1):113-8. doi: 10.1016/j.tvjl.2010.08.017. Epub 2010 Oct 12.

PMID:
20943423
39.

Autologous mesenchymal stem cell treatment increased T regulatory cells with no effect on disease activity in two systemic lupus erythematosus patients.

Carrion F, Nova E, Ruiz C, Diaz F, Inostroza C, Rojo D, Mönckeberg G, Figueroa FE.

Lupus. 2010 Mar;19(3):317-22. doi: 10.1177/0961203309348983. Epub 2009 Nov 17.

PMID:
19919974
40.

Impact of human immunodeficiency virus type 1 reverse transcriptase inhibitor drug resistance mutation interactions on phenotypic susceptibility.

Trivedi V, Von Lindern J, Montes-Walters M, Rojo DR, Shell EJ, Parkin N, O'Brien WA, Ferguson MR.

AIDS Res Hum Retroviruses. 2008 Oct;24(10):1291-300. doi: 10.1089/aid.2007.0244.

41.

A critical role for CD63 in HIV replication and infection of macrophages and cell lines.

Chen H, Dziuba N, Friedrich B, von Lindern J, Murray JL, Rojo DR, Hodge TW, O'Brien WA, Ferguson MR.

Virology. 2008 Sep 30;379(2):191-6. doi: 10.1016/j.virol.2008.06.029. Epub 2008 Aug 5.

42.

Delivery of double-stranded DNA thioaptamers into HIV-1 infected cells for antiviral activity.

Ferguson MR, Rojo DR, Somasunderam A, Thiviyanathan V, Ridley BD, Yang X, Gorenstein DG.

Biochem Biophys Res Commun. 2006 Jun 9;344(3):792-7. Epub 2006 Apr 17.

PMID:
16631118
43.

Combinatorial selection, inhibition, and antiviral activity of DNA thioaptamers targeting the RNase H domain of HIV-1 reverse transcriptase.

Somasunderam A, Ferguson MR, Rojo DR, Thiviyanathan V, Li X, O'Brien WA, Gorenstein DG.

Biochemistry. 2005 Aug 2;44(30):10388-95.

44.

Potential role for CD63 in CCR5-mediated human immunodeficiency virus type 1 infection of macrophages.

von Lindern JJ, Rojo D, Grovit-Ferbas K, Yeramian C, Deng C, Herbein G, Ferguson MR, Pappas TC, Decker JM, Singh A, Collman RG, O'Brien WA.

J Virol. 2003 Mar;77(6):3624-33.

45.

HIV-1 replication cycle.

Ferguson MR, Rojo DR, von Lindern JJ, O'Brien WA.

Clin Lab Med. 2002 Sep;22(3):611-35. Review.

PMID:
12244589
46.

Identification of a signal transduction switch in the chemokine receptor CXCR1.

Suetomi K, Rojo D, Navarro J.

J Biol Chem. 2002 Aug 30;277(35):31563-6. Epub 2002 Jun 20.

47.

Structural biology of chemokine receptors.

Rojo D, Suetomi K, Navarro J.

Biol Res. 1999;32(4):263-72. Review.

PMID:
10983246
48.

Analysis of risk factors associated with nosocomial bacteraemias.

Rojo D, Pinedo A, Clavijo E, García-Rodriguez A, García V.

J Hosp Infect. 1999 Jun;42(2):135-41.

PMID:
10389063
49.

Cloning, expression and properties of the alpha' subunit of casein kinase 2 from zebrafish (Danio rerio).

Antonelli M, Daniotti JL, Rojo D, Allende CC, Allende JE.

Eur J Biochem. 1996 Oct 1;241(1):272-9.

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