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Items: 1 to 50 of 175

1.

Erratum for Schooley et al., "Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection".

Schooley RT, Biswas B, Gill JJ, Hernandez-Morales A, Lancaster J, Lessor L, Barr JJ, Reed SL, Rohwer F, Benler S, Segall AM, Taplitz R, Smith DM, Kerr K, Kumaraswamy M, Nizet V, Lin L, McCauley MD, Strathdee SA, Benson CA, Pope RK, Leroux BM, Picel AC, Mateczun AJ, Cilwa KE, Regeimbal JM, Estrella LA, Wolfe DM, Henry MS, Quinones J, Salka S, Bishop-Lilly KA, Young R, Hamilton T.

Antimicrob Agents Chemother. 2018 Nov 26;62(12). pii: e02221-18. doi: 10.1128/AAC.02221-18. Print 2018 Dec. No abstract available.

2.

A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phage.

Benler S, Cobián-Güemes AG, McNair K, Hung SH, Levi K, Edwards R, Rohwer F.

Microbiome. 2018 Oct 23;6(1):191. doi: 10.1186/s40168-018-0573-6.

3.

Gradients in Primary Production Predict Trophic Strategies of Mixotrophic Corals across Spatial Scales.

Fox MD, Williams GJ, Johnson MD, Radice VZ, Zgliczynski BJ, Kelly ELA, Rohwer FL, Sandin SA, Smith JE.

Curr Biol. 2018 Nov 5;28(21):3355-3363.e4. doi: 10.1016/j.cub.2018.08.057. Epub 2018 Oct 18.

PMID:
30344114
4.

The birth of viromics: an interview with Forest Rohwer.

Greenway A, Rohwer F.

Future Microbiol. 2018 Oct;13:1461-11462. doi: 10.2217/fmb-2018-0223. Epub 2018 Oct 12.

5.

Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism.

Galtier d'Auriac I, Quinn RA, Maughan H, Nothias LF, Little M, Kapono CA, Cobian A, Reyes BT, Green K, Quistad SD, Leray M, Smith JE, Dorrestein PC, Rohwer F, Deheyn DD, Hartmann AC.

Proc Biol Sci. 2018 Aug 15;285(1884). pii: 20181307. doi: 10.1098/rspb.2018.1307.

6.

Correction for Nguyen et al., "Bacteriophage Transcytosis Provides a Mechanism To Cross Epithelial Cell Layers".

Nguyen S, Baker K, Padman BS, Patwa R, Dunstan RA, Weston TA, Schlosser K, Bailey B, Lithgow T, Lazarou M, Luque A, Rohwer F, Blumberg RS, Barr JJ.

MBio. 2018 Jan 2;9(1). pii: e02207-17. doi: 10.1128/mBio.02207-17. No abstract available.

7.

A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction.

Janouškovec J, Tikhonenkov DV, Burki F, Howe AT, Rohwer FL, Mylnikov AP, Keeling PJ.

Curr Biol. 2017 Dec 4;27(23):3717-3724.e5. doi: 10.1016/j.cub.2017.10.051. Epub 2017 Nov 22.

8.

Bacteriophage Transcytosis Provides a Mechanism To Cross Epithelial Cell Layers.

Nguyen S, Baker K, Padman BS, Patwa R, Dunstan RA, Weston TA, Schlosser K, Bailey B, Lithgow T, Lazarou M, Luque A, Rohwer F, Blumberg RS, Barr JJ.

MBio. 2017 Nov 21;8(6). pii: e01874-17. doi: 10.1128/mBio.01874-17. Erratum in: MBio. 2018 Jan 2;9(1):.

9.

Meta-mass shift chemical profiling of metabolomes from coral reefs.

Hartmann AC, Petras D, Quinn RA, Protsyuk I, Archer FI, Ransome E, Williams GJ, Bailey BA, Vermeij MJA, Alexandrov T, Dorrestein PC, Rohwer FL.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11685-11690. doi: 10.1073/pnas.1710248114. Epub 2017 Oct 12.

10.

Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung.

Garg N, Wang M, Hyde E, da Silva RR, Melnik AV, Protsyuk I, Bouslimani A, Lim YW, Wong R, Humphrey G, Ackermann G, Spivey T, Brouha SS, Bandeira N, Lin GY, Rohwer F, Conrad DJ, Alexandrov T, Knight R, Dorrestein PC.

Cell Host Microbe. 2017 Nov 8;22(5):705-716.e4. doi: 10.1016/j.chom.2017.10.001. Epub 2017 Oct 19.

11.

Knowles &Rohwer reply.

Knowles B, Rohwer F.

Nature. 2017 Sep 20;549(7672):E3-E4. doi: 10.1038/nature23296. No abstract available.

PMID:
28933437
12.

Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection.

Schooley RT, Biswas B, Gill JJ, Hernandez-Morales A, Lancaster J, Lessor L, Barr JJ, Reed SL, Rohwer F, Benler S, Segall AM, Taplitz R, Smith DM, Kerr K, Kumaraswamy M, Nizet V, Lin L, McCauley MD, Strathdee SA, Benson CA, Pope RK, Leroux BM, Picel AC, Mateczun AJ, Cilwa KE, Regeimbal JM, Estrella LA, Wolfe DM, Henry MS, Quinones J, Salka S, Bishop-Lilly KA, Young R, Hamilton T.

Antimicrob Agents Chemother. 2017 Sep 22;61(10). pii: e00954-17. doi: 10.1128/AAC.00954-17. Print 2017 Oct. Erratum in: Antimicrob Agents Chemother. 2018 Nov 26;62(12):.

13.

A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells.

Fridman S, Flores-Uribe J, Larom S, Alalouf O, Liran O, Yacoby I, Salama F, Bailleul B, Rappaport F, Ziv T, Sharon I, Cornejo-Castillo FM, Philosof A, Dupont CL, Sánchez P, Acinas SG, Rohwer FL, Lindell D, Béjà O.

Nat Microbiol. 2017 Oct;2(10):1350-1357. doi: 10.1038/s41564-017-0002-9. Epub 2017 Aug 7.

PMID:
28785078
14.

Piggyback-the-Winner in host-associated microbial communities.

Silveira CB, Rohwer FL.

NPJ Biofilms Microbiomes. 2016 Jul 6;2:16010. doi: 10.1038/npjbiofilms.2016.10. eCollection 2016.

15.

Microbial bioenergetics of coral-algal interactions.

Roach TNF, Abieri ML, George EE, Knowles B, Naliboff DS, Smurthwaite CA, Kelly LW, Haas AF, Rohwer FL.

PeerJ. 2017 Jun 21;5:e3423. doi: 10.7717/peerj.3423. eCollection 2017.

16.

Ecological networking of cystic fibrosis lung infections.

Quinn RA, Whiteson K, Lim YW, Zhao J, Conrad D, LiPuma JJ, Rohwer F, Widder S.

NPJ Biofilms Microbiomes. 2016 Dec 2;2:4. doi: 10.1038/s41522-016-0002-1. eCollection 2016.

17.

Variability and host density independence in inductions-based estimates of environmental lysogeny.

Knowles B, Bailey B, Boling L, Breitbart M, Cobián-Güemes A, Del Campo J, Edwards R, Felts B, Grasis J, Haas AF, Katira P, Kelly LW, Luque A, Nulton J, Paul L, Peters G, Robinett N, Sandin S, Segall A, Silveira C, Youle M, Rohwer F.

Nat Microbiol. 2017 Apr 28;2:17064. doi: 10.1038/nmicrobiol.2017.64.

PMID:
28452987
18.

Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen.

Garg N, Zeng Y, Edlund A, Melnik AV, Sanchez LM, Mohimani H, Gurevich A, Miao V, Schiffler S, Lim YW, Luzzatto-Knaan T, Cai S, Rohwer F, Pevzner PA, Cichewicz RH, Alexandrov T, Dorrestein PC.

mSystems. 2016 Dec 20;1(6). pii: e00139-16. doi: 10.1128/mSystems.00139-16. eCollection 2016 Nov-Dec.

19.

Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics.

Janouškovec J, Gavelis GS, Burki F, Dinh D, Bachvaroff TR, Gornik SG, Bright KJ, Imanian B, Strom SL, Delwiche CF, Waller RF, Fensome RA, Leander BS, Rohwer FL, Saldarriaga JF.

Proc Natl Acad Sci U S A. 2017 Jan 10;114(2):E171-E180. doi: 10.1073/pnas.1614842114. Epub 2016 Dec 27.

20.

Viruses and the origin of microbiome selection and immunity.

Quistad SD, Grasis JA, Barr JJ, Rohwer FL.

ISME J. 2017 Apr;11(4):835-840. doi: 10.1038/ismej.2016.182. Epub 2016 Dec 16.

21.

Corrigendum: Lytic to temperate switching of viral communities.

Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F.

Nature. 2016 Nov 3;539(7627):123. doi: 10.1038/nature19335. Epub 2016 Aug 24. No abstract available.

PMID:
27556939
22.

Viruses as Winners in the Game of Life.

Cobián Güemes AG, Youle M, Cantú VA, Felts B, Nulton J, Rohwer F.

Annu Rev Virol. 2016 Sep 29;3(1):197-214.

PMID:
27741409
23.

Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease.

Quinn RA, Lim YW, Mak TD, Whiteson K, Furlan M, Conrad D, Rohwer F, Dorrestein P.

PeerJ. 2016 Aug 11;4:e2174. doi: 10.7717/peerj.2174. eCollection 2016.

24.

Using viromes to predict novel immune proteins in non-model organisms.

Quistad SD, Lim YW, Silva GG, Nelson CE, Haas AF, Kelly LW, Edwards RA, Rohwer FL.

Proc Biol Sci. 2016 Aug 31;283(1837). pii: 20161200. doi: 10.1098/rspb.2016.1200.

25.

Global microbialization of coral reefs.

Haas AF, Fairoz MF, Kelly LW, Nelson CE, Dinsdale EA, Edwards RA, Giles S, Hatay M, Hisakawa N, Knowles B, Lim YW, Maughan H, Pantos O, Roach TN, Sanchez SE, Silveira CB, Sandin S, Smith JE, Rohwer F.

Nat Microbiol. 2016 Apr 25;1(6):16042. doi: 10.1038/nmicrobiol.2016.42.

PMID:
27572833
26.

Correction to 'Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence'.

Quinn RA, Vermeij MJ, Hartmann AC, d'Auriac IG, Benler S, Haas A, Quistad SD, Lim YW, Little M, Sandin S, Smith JE, Dorrestein PC, Rohwer F.

Proc Biol Sci. 2016 Aug 31;283(1837). pii: 20161485. doi: 10.1098/rspb.2016.1485. No abstract available.

27.

Phage on tap-a quick and efficient protocol for the preparation of bacteriophage laboratory stocks.

Bonilla N, Rojas MI, Netto Flores Cruz G, Hung SH, Rohwer F, Barr JJ.

PeerJ. 2016 Jul 26;4:e2261. doi: 10.7717/peerj.2261. eCollection 2016.

28.

Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence.

Quinn RA, Vermeij MJ, Hartmann AC, Galtier d'Auriac I, Benler S, Haas A, Quistad SD, Lim YW, Little M, Sandin S, Smith JE, Dorrestein PC, Rohwer F.

Proc Biol Sci. 2016 Apr 27;283(1829). pii: 20160469. doi: 10.1098/rspb.2016.0469. Erratum in: Proc Biol Sci. 2016 Aug 31;283(1837). pii: 20161485. doi: 10.1098/rspb.2016.1485.

29.

Energetic differences between bacterioplankton trophic groups and coral reef resistance.

McDole Somera T, Bailey B, Barott K, Grasis J, Hatay M, Hilton BJ, Hisakawa N, Nosrat B, Nulton J, Silveira CB, Sullivan C, Brainard RE, Rohwer F.

Proc Biol Sci. 2016 Apr 27;283(1829). pii: 20160467. doi: 10.1098/rspb.2016.0467.

30.

Lytic to temperate switching of viral communities.

Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F.

Nature. 2016 Mar 24;531(7595):466-70. doi: 10.1038/nature17193. Epub 2016 Mar 16. Erratum in: Nature. 2016 Nov 3;539(7627):123.

PMID:
26982729
31.

Re-evaluating the health of coral reef communities: baselines and evidence for human impacts across the central Pacific.

Smith JE, Brainard R, Carter A, Grillo S, Edwards C, Harris J, Lewis L, Obura D, Rohwer F, Sala E, Vroom PS, Sandin S.

Proc Biol Sci. 2016 Jan 13;283(1822). pii: 20151985. doi: 10.1098/rspb.2015.1985.

32.

Metagenomic and satellite analyses of red snow in the Russian Arctic.

Hisakawa N, Quistad SD, Hester ER, Martynova D, Maughan H, Sala E, Gavrilo MV, Rohwer F.

PeerJ. 2015 Dec 10;3:e1491. doi: 10.7717/peerj.1491. eCollection 2015.

33.

In retrospect: A century of phage lessons.

Rohwer F, Segall AM.

Nature. 2015 Dec 3;528(7580):46-8. doi: 10.1038/528046a. No abstract available.

PMID:
26632584
34.

Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome.

Quinn RA, Phelan VV, Whiteson KL, Garg N, Bailey BA, Lim YW, Conrad DJ, Dorrestein PC, Rohwer FL.

ISME J. 2016 Jun;10(6):1483-98. doi: 10.1038/ismej.2015.207. Epub 2015 Dec 1.

35.

Can we measure beauty? Computational evaluation of coral reef aesthetics.

Haas AF, Guibert M, Foerschner A, Co T, Calhoun S, George E, Hatay M, Dinsdale E, Sandin SA, Smith JE, Vermeij MJ, Felts B, Dustan P, Salamon P, Rohwer F.

PeerJ. 2015 Nov 10;3:e1390. doi: 10.7717/peerj.1390. eCollection 2015.

36.

Stable and sporadic symbiotic communities of coral and algal holobionts.

Hester ER, Barott KL, Nulton J, Vermeij MJ, Rohwer FL.

ISME J. 2016 May;10(5):1157-69. doi: 10.1038/ismej.2015.190. Epub 2015 Nov 10.

37.

Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters.

Barr JJ, Auro R, Sam-Soon N, Kassegne S, Peters G, Bonilla N, Hatay M, Mourtada S, Bailey B, Youle M, Felts B, Baljon A, Nulton J, Salamon P, Rohwer F.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13675-80. doi: 10.1073/pnas.1508355112. Epub 2015 Oct 19.

38.

Some of the most interesting CASP11 targets through the eyes of their authors.

Kryshtafovych A, Moult J, Baslé A, Burgin A, Craig TK, Edwards RA, Fass D, Hartmann MD, Korycinski M, Lewis RJ, Lorimer D, Lupas AN, Newman J, Peat TS, Piepenbrink KH, Prahlad J, van Raaij MJ, Rohwer F, Segall AM, Seguritan V, Sundberg EJ, Singh AK, Wilson MA, Schwede T.

Proteins. 2016 Sep;84 Suppl 1:34-50. doi: 10.1002/prot.24942. Epub 2015 Nov 16.

39.

Gut DNA viromes of Malawian twins discordant for severe acute malnutrition.

Reyes A, Blanton LV, Cao S, Zhao G, Manary M, Trehan I, Smith MI, Wang D, Virgin HW, Rohwer F, Gordon JI.

Proc Natl Acad Sci U S A. 2015 Sep 22;112(38):11941-6. doi: 10.1073/pnas.1514285112. Epub 2015 Sep 8.

40.

Closing the gaps on the viral photosystem-I psaDCAB gene organization.

Roitman S, Flores-Uribe J, Philosof A, Knowles B, Rohwer F, Ignacio-Espinoza JC, Sullivan MB, Cornejo-Castillo FM, Sánchez P, Acinas SG, Dupont CL, Béjà O.

Environ Microbiol. 2015 Dec;17(12):5100-8. doi: 10.1111/1462-2920.13036. Epub 2015 Oct 14.

41.

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins.

Sanchez SE, Cuevas DA, Rostron JE, Liang TY, Pivaroff CG, Haynes MR, Nulton J, Felts B, Bailey BA, Salamon P, Edwards RA, Burgin AB, Segall AM, Rohwer F.

J Vis Exp. 2015 Jun 11;(100):e52854. doi: 10.3791/52854.

42.

Metabolic cascades in marine microbial communities.

Haas AF, Rohwer F.

Proc Natl Acad Sci U S A. 2015 May 5;112(18):5552-3. doi: 10.1073/pnas.1504310112. Epub 2015 Apr 27. No abstract available.

43.

Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures.

Garg N, Kapono C, Lim YW, Koyama N, Vermeij MJ, Conrad D, Rohwer F, Dorrestein PC.

Int J Mass Spectrom. 2015 Feb 1;377:719-717.

44.

A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation.

Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F.

ISME J. 2015 Mar 17;9(4):1052. doi: 10.1038/ismej.2014.266. No abstract available.

45.

Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples.

Lim YW, Haynes M, Furlan M, Robertson CE, Harris JK, Rohwer F.

J Vis Exp. 2014 Dec 22;(94). doi: 10.3791/52117.

46.

Diversity of viral photosystem-I psaA genes.

Hevroni G, Enav H, Rohwer F, Béjà O.

ISME J. 2015 Aug;9(8):1892-8. doi: 10.1038/ismej.2014.244. Epub 2014 Dec 23.

47.

A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation.

Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F.

ISME J. 2015 Mar 17;9(4):1024-38. doi: 10.1038/ismej.2014.234. Erratum in: ISME J. 2015 Apr;9(4):1052.

48.

Unraveling the unseen players in the ocean - a field guide to water chemistry and marine microbiology.

Haas AF, Knowles B, Lim YW, McDole Somera T, Kelly LW, Hatay M, Rohwer F.

J Vis Exp. 2014 Nov 5;(93):e52131. doi: 10.3791/52131.

49.

Stochastic tracking of infection in a CF lung.

Zarei S, Mirtar A, Rohwer F, Salamon P.

PLoS One. 2014 Oct 31;9(10):e111245. doi: 10.1371/journal.pone.0111245. eCollection 2014.

50.

Species-specific viromes in the ancestral holobiont Hydra.

Grasis JA, Lachnit T, Anton-Erxleben F, Lim YW, Schmieder R, Fraune S, Franzenburg S, Insua S, Machado G, Haynes M, Little M, Kimble R, Rosenstiel P, Rohwer FL, Bosch TC.

PLoS One. 2014 Oct 24;9(10):e109952. doi: 10.1371/journal.pone.0109952. eCollection 2014.

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