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Items: 1 to 50 of 183

1.

Predicting breast tumor proliferation from whole-slide images: The TUPAC16 challenge.

Veta M, Heng YJ, Stathonikos N, Bejnordi BE, Beca F, Wollmann T, Rohr K, Shah MA, Wang D, Rousson M, Hedlund M, Tellez D, Ciompi F, Zerhouni E, Lanyi D, Viana M, Kovalev V, Liauchuk V, Phoulady HA, Qaiser T, Graham S, Rajpoot N, Sjöblom E, Molin J, Paeng K, Hwang S, Park S, Jia Z, Chang EI, Xu Y, Beck AH, van Diest PJ, Pluim JPW.

Med Image Anal. 2019 Feb 27;54:111-121. doi: 10.1016/j.media.2019.02.012. [Epub ahead of print]

PMID:
30861443
2.

A Global Method for Non-Rigid Registration of Cell Nuclei in Live Cell Time-Lapse Images.

Gao Q, Rohr K.

IEEE Trans Med Imaging. 2019 Feb 27. doi: 10.1109/TMI.2019.2901918. [Epub ahead of print]

PMID:
30835217
3.

Circuit development in the master clock network of mammals.

Carmona-Alcocer V, Rohr KE, Joye DAM, Evans JA.

Eur J Neurosci. 2018 Nov 6. doi: 10.1111/ejn.14259. [Epub ahead of print] Review.

PMID:
30402923
4.

Personalized stent design for congenital heart defects using pulsatile blood flow simulations.

Gundelwein L, Miró J, Gonzalez Barlatay F, Lapierre C, Rohr K, Duong L.

J Biomech. 2018 Nov 16;81:68-75. doi: 10.1016/j.jbiomech.2018.09.013. Epub 2018 Sep 19.

PMID:
30274737
5.

Rigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution.

Ali S, Wörz S, Amunts K, Eils R, Axer M, Rohr K.

Neuroimage. 2018 Nov 1;181:235-251. doi: 10.1016/j.neuroimage.2018.06.084. Epub 2018 Jul 6.

PMID:
30018015
6.

Asymmetric vasopressin signaling spatially organizes the master circadian clock.

Bedont JL, Rohr KE, Bathini A, Hattar S, Blackshaw S, Sehgal A, Evans JA.

J Comp Neurol. 2018 Sep 1;526(13):2048-2067. doi: 10.1002/cne.24478. Epub 2018 Aug 22.

PMID:
29931690
7.

Production of the potential sweetener 5-ketofructose from fructose in fed-batch cultivation with Gluconobacter oxydans.

Herweg E, Schöpping M, Rohr K, Siemen A, Frank O, Hofmann T, Deppenmeier U, Büchs J.

Bioresour Technol. 2018 Jul;259:164-172. doi: 10.1016/j.biortech.2018.03.038. Epub 2018 Mar 9.

PMID:
29550669
8.

Clathrin-adaptor ratio and membrane tension regulate the flat-to-curved transition of the clathrin coat during endocytosis.

Bucher D, Frey F, Sochacki KA, Kummer S, Bergeest JP, Godinez WJ, Kräusslich HG, Rohr K, Taraska JW, Schwarz US, Boulant S.

Nat Commun. 2018 Mar 16;9(1):1109. doi: 10.1038/s41467-018-03533-0.

9.

Phenotypic memory in Bacillus subtilis links dormancy entry and exit by a spore quantity-quality tradeoff.

Mutlu A, Trauth S, Ziesack M, Nagler K, Bergeest JP, Rohr K, Becker N, Höfer T, Bischofs IB.

Nat Commun. 2018 Jan 4;9(1):69. doi: 10.1038/s41467-017-02477-1.

10.

An objective comparison of cell-tracking algorithms.

Ulman V, Maška M, Magnusson KEG, Ronneberger O, Haubold C, Harder N, Matula P, Matula P, Svoboda D, Radojevic M, Smal I, Rohr K, Jaldén J, Blau HM, Dzyubachyk O, Lelieveldt B, Xiao P, Li Y, Cho SY, Dufour AC, Olivo-Marin JC, Reyes-Aldasoro CC, Solis-Lemus JA, Bensch R, Brox T, Stegmaier J, Mikut R, Wolf S, Hamprecht FA, Esteves T, Quelhas P, Demirel Ö, Malmström L, Jug F, Tomancak P, Meijering E, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solorzano C.

Nat Methods. 2017 Dec;14(12):1141-1152. doi: 10.1038/nmeth.4473. Epub 2017 Oct 30.

11.

Development of a new software and test setup for analyzing hVOR in very young children by vHIT.

Wenzel A, Eck S, Hülse K, Rohr K, Hörmann K, Umbreit C, Hülse M, Hülse R.

J Vestib Res. 2017;27(2-3):155-162. doi: 10.3233/VES-170611.

PMID:
29064825
12.

Non-Rigid Contour-Based Registration of Cell Nuclei in 2-D Live Cell Microscopy Images Using a Dynamic Elasticity Model.

Sorokin DV, Peterlik I, Tektonidis M, Rohr K, Matula P.

IEEE Trans Med Imaging. 2018 Jan;37(1):173-184. doi: 10.1109/TMI.2017.2734169. Epub 2017 Jul 31.

PMID:
28783625
13.

Workflows for microscopy image analysis and cellular phenotyping.

Wollmann T, Erfle H, Eils R, Rohr K, Gunkel M.

J Biotechnol. 2017 Nov 10;261:70-75. doi: 10.1016/j.jbiotec.2017.07.019. Epub 2017 Jul 27. Review.

PMID:
28757289
14.

Long days enhance recognition memory and increase insulin-like growth factor 2 in the hippocampus.

Dellapolla A, Kloehn I, Pancholi H, Callif B, Wertz D, Rohr KE, Hurley MM, Baker KM, Hattar S, Gilmartin MR, Evans JA.

Sci Rep. 2017 Jun 20;7(1):3925. doi: 10.1038/s41598-017-03896-2.

15.

How Precise Are Preinterventional Measurements Using Centerline Analysis Applications? Objective Ground Truth Evaluation Reveals Software-Specific Centerline Characteristics.

Hoegen P, Wörz S, Müller-Eschner M, Geisbüsch P, Liao W, Rohr K, Schmitt M, Rengier F, Kauczor HU, von Tengg-Kobligk H.

J Endovasc Ther. 2017 Aug;24(4):584-594. doi: 10.1177/1526602817713737. Epub 2017 Jun 7.

PMID:
28587563
16.

The long non-coding RNA LINC00152 is essential for cell cycle progression through mitosis in HeLa cells.

Nötzold L, Frank L, Gandhi M, Polycarpou-Schwarz M, Groß M, Gunkel M, Beil N, Erfle H, Harder N, Rohr K, Trendel J, Krijgsveld J, Longerich T, Schirmacher P, Boutros M, Erhardt S, Diederichs S.

Sci Rep. 2017 May 23;7(1):2265. doi: 10.1038/s41598-017-02357-0.

17.

Progressive Minimal Path Method for Segmentation of 2D and 3D Line Structures.

Liao W, Worz S, Kang CK, Cho ZH, Rohr K.

IEEE Trans Pattern Anal Mach Intell. 2018 Mar;40(3):696-709. doi: 10.1109/TPAMI.2017.2691709. Epub 2017 Apr 6.

PMID:
28410097
18.

Phosphorylation-Dependent Feedback Inhibition of RIG-I by DAPK1 Identified by Kinome-wide siRNA Screening.

Willemsen J, Wicht O, Wolanski JC, Baur N, Bastian S, Haas DA, Matula P, Knapp B, Meyniel-Schicklin L, Wang C, Bartenschlager R, Lohmann V, Rohr K, Erfle H, Kaderali L, Marcotrigiano J, Pichlmair A, Binder M.

Mol Cell. 2017 Feb 2;65(3):403-415.e8. doi: 10.1016/j.molcel.2016.12.021. Epub 2017 Jan 26.

19.

Diffeomorphic Multi-Frame Non-Rigid Registration of Cell Nuclei in 2D and 3D Live Cell Images.

Tektonidis M, Rohr K.

IEEE Trans Image Process. 2017 Mar;26(3):1405-1417. doi: 10.1109/TIP.2017.2653360. Epub 2017 Jan 16.

PMID:
28092560
20.

Quantification of telomere features in tumor tissue sections by an automated 3D imaging-based workflow.

Gunkel M, Chung I, Wörz S, Deeg KI, Simon R, Sauter G, Jones DTW, Korshunov A, Rohr K, Erfle H, Rippe K.

Methods. 2017 Feb 1;114:60-73. doi: 10.1016/j.ymeth.2016.09.014. Epub 2016 Oct 7.

PMID:
27725304
21.

Automated 3D Volumetry of the Pulmonary Arteries based on Magnetic Resonance Angiography Has Potential for Predicting Pulmonary Hypertension.

Rengier F, Wörz S, Melzig C, Ley S, Fink C, Benjamin N, Partovi S, von Tengg-Kobligk H, Rohr K, Kauczor HU, Grünig E.

PLoS One. 2016 Sep 14;11(9):e0162516. doi: 10.1371/journal.pone.0162516. eCollection 2016.

22.

3D Geometric Analysis of the Pediatric Aorta in 3D MRA Follow-Up Images with Application to Aortic Coarctation.

Wörz S, Schenk JP, Alrajab A, von Tengg-Kobligk H, Rohr K, Arnold R.

Methods Inf Med. 2016 Oct 17;55(5):455-462. Epub 2016 Jul 13.

PMID:
27405687
23.

High-Throughput RNAi Screening Identifies a Role for the Osteopontin Pathway in Proliferation and Migration of Human Aortic Smooth Muscle Cells.

Zhang L, Erfle H, Harder N, Beneke J, Beil N, Bulkescher R, Rohr K, Keese M.

Cardiovasc Drugs Ther. 2016 Jun;30(3):281-95. doi: 10.1007/s10557-016-6663-4.

PMID:
27095116
24.

A spherical harmonics intensity model for 3D segmentation and 3D shape analysis of heterochromatin foci.

Eck S, Wörz S, Müller-Ott K, Hahn M, Biesdorf A, Schotta G, Rippe K, Rohr K.

Med Image Anal. 2016 Aug;32:18-31. doi: 10.1016/j.media.2016.03.001. Epub 2016 Mar 17.

PMID:
27037463
25.

Live Cell Analysis and Mathematical Modeling Identify Determinants of Attenuation of Dengue Virus 2'-O-Methylation Mutant.

Schmid B, Rinas M, Ruggieri A, Acosta EG, Bartenschlager M, Reuter A, Fischl W, Harder N, Bergeest JP, Flossdorf M, Rohr K, Höfer T, Bartenschlager R.

PLoS Pathog. 2015 Dec 31;11(12):e1005345. doi: 10.1371/journal.ppat.1005345. eCollection 2015 Dec.

26.

Automated Analysis of Single-Molecule Photobleaching Data by Statistical Modeling of Spot Populations.

Liesche C, Grussmayer KS, Ludwig M, Wörz S, Rohr K, Herten DP, Beaudouin J, Eils R.

Biophys J. 2015 Dec 1;109(11):2352-62. doi: 10.1016/j.bpj.2015.10.035.

27.

The SUMOylation Pathway Restricts Gene Transduction by Adeno-Associated Viruses.

Hölscher C, Sonntag F, Henrich K, Chen Q, Beneke J, Matula P, Rohr K, Kaderali L, Beil N, Erfle H, Kleinschmidt JA, Müller M.

PLoS Pathog. 2015 Dec 1;11(12):e1005281. doi: 10.1371/journal.ppat.1005281. eCollection 2015 Dec.

28.

Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2.

Zepeda-Mendoza CJ, Mukhopadhyay S, Wong ES, Harder N, Splinter E, de Wit E, Eckersley-Maslin MA, Ried T, Eils R, Rohr K, Mills A, de Laat W, Flicek P, Sengupta AM, Spector DL.

BMC Genomics. 2015 Nov 21;16:982. doi: 10.1186/s12864-015-2137-5.

29.

Automatic 3D Segmentation and Quantification of Lenticulostriate Arteries from High-Resolution 7 Tesla MRA Images.

Wei Liao, Rohr K, Chang-Ki Kang, Zang-Hee Cho, Worz S.

IEEE Trans Image Process. 2016 Jan;25(1):400-13. doi: 10.1109/TIP.2015.2499085. Epub 2015 Nov 9.

PMID:
26571526
30.

Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association.

Jaiswal A, Godinez WJ, Eils R, Lehmann MJ, Rohr K.

IEEE Trans Image Process. 2015 Nov;24(11):4122-36. doi: 10.1109/TIP.2015.2458174. Epub 2015 Jul 17.

PMID:
26208342
31.

Performance and sensitivity evaluation of 3D spot detection methods in confocal microscopy.

Štěpka K, Matula P, Matula P, Wörz S, Rohr K, Kozubek M.

Cytometry A. 2015 Aug;87(8):759-72. doi: 10.1002/cyto.a.22692. Epub 2015 May 28.

32.

PML induces compaction, TRF2 depletion and DNA damage signaling at telomeres and promotes their alternative lengthening.

Osterwald S, Deeg KI, Chung I, Parisotto D, Wörz S, Rohr K, Erfle H, Rippe K.

J Cell Sci. 2015 May 15;128(10):1887-900. doi: 10.1242/jcs.148296. Epub 2015 Apr 23.

33.

Targeting mitosis-regulating genes in cisplatin-sensitive and -resistant melanoma cells: A live-cell RNAi screen displays differential nucleus-derived phenotypes.

Erfle H, Pashayeva K, Harder N, Zhang L, Rohr K, Schadendorf D, Ugurel S, Keese M.

Biotechnol J. 2015 Sep;10(9):1467-77. doi: 10.1002/biot.201400501. Epub 2015 May 5.

PMID:
25880279
34.

Aortic morphometry at endograft position as assessed by 3D image analysis affects risk of type I endoleak formation after TEVAR.

Kotelis D, Brenke C, Wörz S, Rengier F, Rohr K, Kauczor HU, Böckler D, von Tengg-Kobligk H.

Langenbecks Arch Surg. 2015 May;400(4):523-9. doi: 10.1007/s00423-015-1291-1. Epub 2015 Feb 22.

PMID:
25702140
35.

Large-scale tracking and classification for automatic analysis of cell migration and proliferation, and experimental optimization of high-throughput screens of neuroblastoma cells.

Harder N, Batra R, Diessl N, Gogolin S, Eils R, Westermann F, König R, Rohr K.

Cytometry A. 2015 Jun;87(6):524-40. doi: 10.1002/cyto.a.22632. Epub 2015 Jan 28.

36.

Characterizing protein interactions employing a genome-wide siRNA cellular phenotyping screen.

Suratanee A, Schaefer MH, Betts MJ, Soons Z, Mannsperger H, Harder N, Oswald M, Gipp M, Ramminger E, Marcus G, Männer R, Rohr K, Wanker E, Russell RB, Andrade-Navarro MA, Eils R, König R.

PLoS Comput Biol. 2014 Sep 25;10(9):e1003814. doi: 10.1371/journal.pcbi.1003814. eCollection 2014 Sep.

37.

Tracking multiple particles in fluorescence time-lapse microscopy images via probabilistic data association.

Godinez WJ, Rohr K.

IEEE Trans Med Imaging. 2015 Feb;34(2):415-32. doi: 10.1109/TMI.2014.2359541. Epub 2014 Sep 19.

PMID:
25252280
38.

Non-rigid multi-frame registration of cell nuclei in live cell fluorescence microscopy image data.

Tektonidis M, Kim IH, Chen YC, Eils R, Spector DL, Rohr K.

Med Image Anal. 2015 Jan;19(1):1-14. doi: 10.1016/j.media.2014.07.006. Epub 2014 Aug 11.

PMID:
25181702
39.

An inducible hepatocellular carcinoma model for preclinical evaluation of antiangiogenic therapy in adult mice.

Runge A, Hu J, Wieland M, Bergeest JP, Mogler C, Neumann A, Géraud C, Arnold B, Rohr K, Komljenovic D, Schirmacher P, Goerdt S, Augustin HG.

Cancer Res. 2014 Aug 1;74(15):4157-69. doi: 10.1158/0008-5472.CAN-13-2311. Epub 2014 Jun 6.

40.

3D morphometry using automated aortic segmentation in native MR angiography: an alternative to contrast enhanced MRA?

Müller-Eschner M, Müller T, Biesdorf A, Wörz S, Rengier F, Böckler D, Kauczor HU, Rohr K, von Tengg-Kobligk H.

Cardiovasc Diagn Ther. 2014 Apr;4(2):80-7. doi: 10.3978/j.issn.2223-3652.2013.10.06.

41.

Investigating the role of F-actin in human immunodeficiency virus assembly by live-cell microscopy.

Rahman SA, Koch P, Weichsel J, Godinez WJ, Schwarz U, Rohr K, Lamb DC, Kräusslich HG, Müller B.

J Virol. 2014 Jul;88(14):7904-14. doi: 10.1128/JVI.00431-14. Epub 2014 Apr 30.

42.

A benchmark for comparison of cell tracking algorithms.

Maška M, Ulman V, Svoboda D, Matula P, Matula P, Ederra C, Urbiola A, España T, Venkatesan S, Balak DM, Karas P, Bolcková T, Streitová M, Carthel C, Coraluppi S, Harder N, Rohr K, Magnusson KE, Jaldén J, Blau HM, Dzyubachyk O, Křížek P, Hagen GM, Pastor-Escuredo D, Jimenez-Carretero D, Ledesma-Carbayo MJ, Muñoz-Barrutia A, Meijering E, Kozubek M, Ortiz-de-Solorzano C.

Bioinformatics. 2014 Jun 1;30(11):1609-17. doi: 10.1093/bioinformatics/btu080. Epub 2014 Feb 12.

43.

Globally optimal curvature-regularized fast marching for vessel segmentation.

Liao W, Rohr K, Wörz S.

Med Image Comput Comput Assist Interv. 2013;16(Pt 1):550-7.

PMID:
24505710
44.

Objective comparison of particle tracking methods.

Chenouard N, Smal I, de Chaumont F, Maška M, Sbalzarini IF, Gong Y, Cardinale J, Carthel C, Coraluppi S, Winter M, Cohen AR, Godinez WJ, Rohr K, Kalaidzidis Y, Liang L, Duncan J, Shen H, Xu Y, Magnusson KE, Jaldén J, Blau HM, Paul-Gilloteaux P, Roudot P, Kervrann C, Waharte F, Tinevez JY, Shorte SL, Willemse J, Celler K, van Wezel GP, Dan HW, Tsai YS, Ortiz de Solórzano C, Olivo-Marin JC, Meijering E.

Nat Methods. 2014 Mar;11(3):281-9. doi: 10.1038/nmeth.2808. Epub 2014 Jan 19.

45.

True four-dimensional analysis of thoracic aortic displacement and distension using model-based segmentation of computed tomography angiography.

Weber TF, Müller T, Biesdorf A, Wörz S, Rengier F, Heye T, Holland-Letz T, Rohr K, Kauczor HU, von Tengg-Kobligk H.

Int J Cardiovasc Imaging. 2014 Jan;30(1):185-94. doi: 10.1007/s10554-013-0307-6. Epub 2013 Oct 18.

PMID:
24135852
46.

Stathmin regulates keratinocyte proliferation and migration during cutaneous regeneration.

Schmitt S, Safferling K, Westphal K, Hrabowski M, Müller U, Angel P, Wiechert L, Ehemann V, Müller B, Holland-Cunz S, Stichel D, Harder N, Rohr K, Germann G, Matthäus F, Schirmacher P, Grabe N, Breuhahn K.

PLoS One. 2013 Sep 16;8(9):e75075. doi: 10.1371/journal.pone.0075075. eCollection 2013. Erratum in: PLoS One. 2013;8(12). doi:10.1371/annotation/1ece268f-578b-429a-b70b-c3ff002aec0b.

47.

Chromosome segregation by the Escherichia coli Min system.

Di Ventura B, Knecht B, Andreas H, Godinez WJ, Fritsche M, Rohr K, Nickel W, Heermann DW, Sourjik V.

Mol Syst Biol. 2013;9:686. doi: 10.1038/msb.2013.44.

48.

Overlapping gene coexpression patterns in human medullary thymic epithelial cells generate self-antigen diversity.

Pinto S, Michel C, Schmidt-Glenewinkel H, Harder N, Rohr K, Wild S, Brors B, Kyewski B.

Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):E3497-505. doi: 10.1073/pnas.1308311110. Epub 2013 Aug 26.

49.

Suv4-20h2 mediates chromatin compaction and is important for cohesin recruitment to heterochromatin.

Hahn M, Dambacher S, Dulev S, Kuznetsova AY, Eck S, Wörz S, Sadic D, Schulte M, Mallm JP, Maiser A, Debs P, von Melchner H, Leonhardt H, Schermelleh L, Rohr K, Rippe K, Storchova Z, Schotta G.

Genes Dev. 2013 Apr 15;27(8):859-72. doi: 10.1101/gad.210377.112. Epub 2013 Apr 18.

50.

Xenopus cytoplasmic linker-associated protein 1 (XCLASP1) promotes axon elongation and advance of pioneer microtubules.

Marx A, Godinez WJ, Tsimashchuk V, Bankhead P, Rohr K, Engel U.

Mol Biol Cell. 2013 May;24(10):1544-58. doi: 10.1091/mbc.E12-08-0573. Epub 2013 Mar 20.

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