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Antimicrobial Susceptibility of Clinical and Environmental Mycobacterium chimaera isolates.

Mok S, Hannan MM, Nölke L, Stapleton P, O'Sullivan N, Murphy P, McLaughlin AM, McNamara E, Fitzgibbon M, Rogers TR.

Antimicrob Agents Chemother. 2019 Jul 1. pii: AAC.00755-19. doi: 10.1128/AAC.00755-19. [Epub ahead of print]


Prevention of healthcare-associated invasive aspergillosis during hospital construction/renovation works.

Talento AF, Fitzgerald M, Redington B, O'Sullivan N, Fenelon L, Rogers TR.

J Hosp Infect. 2019 Jan 7. pii: S0195-6701(19)30001-5. doi: 10.1016/j.jhin.2018.12.020. [Epub ahead of print] Review.


CD3ε Expression Defines Functionally Distinct Subsets of Vδ1 T Cells in Patients With Human Immunodeficiency Virus Infection.

Dunne PJ, Maher CO, Freeley M, Dunne K, Petrasca A, Orikiiriza J, Dunne MR, Reidy D, O'Dea S, Loy A, Woo J, Long A, Rogers TR, Mulcahy F, Doherty DG.

Front Immunol. 2018 May 2;9:940. doi: 10.3389/fimmu.2018.00940. eCollection 2018.


Post-influenzal triazole-resistant aspergillosis following allogeneic stem cell transplantation.

Talento AF, Dunne K, Murphy N, O'Connell B, Chan G, Joyce EA, Hagen F, Meis JF, Fahy R, Bacon L, Vandenberge E, Rogers TR.

Mycoses. 2018 Aug;61(8):570-575. doi: 10.1111/myc.12770. Epub 2018 Jun 11.


A cluster of multidrug-resistant Mycobacterium tuberculosis among patients arriving in Europe from the Horn of Africa: a molecular epidemiological study.

Walker TM, Merker M, Knoblauch AM, Helbling P, Schoch OD, van der Werf MJ, Kranzer K, Fiebig L, Kröger S, Haas W, Hoffmann H, Indra A, Egli A, Cirillo DM, Robert J, Rogers TR, Groenheit R, Mengshoel AT, Mathys V, Haanperä M, Soolingen DV, Niemann S, Böttger EC, Keller PM; MDR-TB Cluster Consortium.

Lancet Infect Dis. 2018 Apr;18(4):431-440. doi: 10.1016/S1473-3099(18)30004-5. Epub 2018 Jan 8. Erratum in: Lancet Infect Dis. 2018 Jan 10;:.


Diagnosis of aspergillosis by PCR: Clinical considerations and technical tips.

Barnes RA, White PL, Morton CO, Rogers TR, Cruciani M, Loeffler J, Donnelly JP.

Med Mycol. 2018 Apr 1;56(suppl_1):60-72. doi: 10.1093/mmy/myx091. Review.


Molecular epidemiology of multi- and extensively-drug-resistant Mycobacterium tuberculosis in Ireland, 2001-2014.

Roycroft E, O'Toole RF, Fitzgibbon MM, Montgomery L, O'Meara M, Downes P, Jackson S, O'Donnell J, Laurenson IF, McLaughlin AM, Keane J, Rogers TR.

J Infect. 2018 Jan;76(1):55-67. doi: 10.1016/j.jinf.2017.10.002. Epub 2017 Oct 12.


Erratum to: Surface layer proteins from virulent Clostridium difficile ribotypes exhibit signatures of positive selection with consequences for innate immune response.

Lynch M, Walsh TA, Marszalowska I, Webb AE, Mac Aogáin M, Rogers TR, Windle H, Kelleher D, O'Connell MJ, Loscher CE.

BMC Evol Biol. 2017 Jun 12;17(1):135. doi: 10.1186/s12862-017-0990-3. No abstract available.


Fourteen Draft Genome Sequences for the First Reported Cases of Azithromycin-Resistant Neisseria gonorrhoeae in Ireland.

Mac Aogáin M, Fennelly N, Walsh A, Lynagh Y, Bekaert M, Lawlor B, Walsh P, Kelly B, Rogers TR, Crowley B.

Genome Announc. 2017 Jun 8;5(23). pii: e00403-17. doi: 10.1128/genomeA.00403-17.


A prospective study of fungal biomarkers to improve management of invasive fungal diseases in a mixed specialty critical care unit.

Talento AF, Dunne K, Joyce EA, Palmer M, Johnson E, White PL, Springer J, Loeffler J, Ryan T, Collins D, Rogers TR.

J Crit Care. 2017 Aug;40:119-127. doi: 10.1016/j.jcrc.2017.03.025. Epub 2017 Mar 30.


Intercountry Transfer of Triazole-Resistant Aspergillus fumigatus on Plant Bulbs.

Dunne K, Hagen F, Pomeroy N, Meis JF, Rogers TR.

Clin Infect Dis. 2017 Jul 1;65(1):147-149. doi: 10.1093/cid/cix257.


Evaluation of GenoType NTM-DR Assay for Identification of Mycobacterium chimaera.

Mok S, Rogers TR, Fitzgibbon M.

J Clin Microbiol. 2017 Jun;55(6):1821-1826. doi: 10.1128/JCM.00009-17. Epub 2017 Mar 29.


Identification of a novel sequence type of Escherichia coli as the causative agent of pyelonephritis and bloodstream infection.

Mac Aogáin M, Miajlovic H, Moloney G, Chotirmall SH, Rogers TR, Smith SG.

JMM Case Rep. 2016 Oct 31;3(5):e005061. doi: 10.1099/jmmcr.0.005061. eCollection 2016 Oct.


Surface layer proteins from virulent Clostridium difficile ribotypes exhibit signatures of positive selection with consequences for innate immune response.

Lynch M, Walsh TA, Marszalowska I, Webb AE, Mac Aogain M, Rogers TR, Windle H, Kelleher D, O'Connell MJ, Loscher CE.

BMC Evol Biol. 2017 Mar 23;17(1):90. doi: 10.1186/s12862-017-0937-8. Erratum in: BMC Evol Biol. 2017 Jun 12;17 (1):135.


Identification of a novel mutation at the primary dimer interface of GyrA conferring fluoroquinolone resistance in Clostridium difficile.

Mac Aogáin M, Kilkenny S, Walsh C, Lindsay S, Moloney G, Morris T, Jones S, Rogers TR.

J Glob Antimicrob Resist. 2015 Dec;3(4):295-299. doi: 10.1016/j.jgar.2015.09.007. Epub 2015 Nov 3.


Possible Evidence for a New Form of Liquid Buried in the Surface Tension of Supercooled Water.

Rogers TR, Leong KY, Wang F.

Sci Rep. 2016 Sep 12;6:33284. doi: 10.1038/srep33284.


Possible Interplay Between Hospital and Community Transmission of a Novel Clostridium Difficile Sequence Type 295 Recognized by Next-Generation Sequencing.

Moloney G, Mac Aogáin M, Kelleghan M, O'Connell B, Hurley C, Montague E, Conlon M, Murray H, Rogers TR.

Infect Control Hosp Epidemiol. 2016 Jun;37(6):680-4. doi: 10.1017/ice.2016.52. Epub 2016 Apr 14.


Proteomic Profiling of Serological Responses to Aspergillus fumigatus Antigens in Patients with Invasive Aspergillosis.

Teutschbein J, Simon S, Lother J, Springer J, Hortschansky P, Morton CO, Löffler J, Einsele H, Conneally E, Rogers TR, Guthke R, Brakhage AA, Kniemeyer O.

J Proteome Res. 2016 May 6;15(5):1580-91. doi: 10.1021/acs.jproteome.6b00042. Epub 2016 Mar 24.


Toxin Immunoassays and Clostridium difficile Infection.

Moloney G, O'Connell B, Rogers TR.

JAMA Intern Med. 2016 Mar;176(3):413-4. doi: 10.1001/jamainternmed.2015.8536. No abstract available.


Identification of emergent bla CMY-2 -carrying Proteus mirabilis lineages by whole-genome sequencing.

Mac Aogáin M, Rogers TR, Crowley B.

New Microbes New Infect. 2015 Nov 27;9:58-62. doi: 10.1016/j.nmni.2015.11.012. eCollection 2016 Jan.


Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study.

Pankhurst LJ, Del Ojo Elias C, Votintseva AA, Walker TM, Cole K, Davies J, Fermont JM, Gascoyne-Binzi DM, Kohl TA, Kong C, Lemaitre N, Niemann S, Paul J, Rogers TR, Roycroft E, Smith EG, Supply P, Tang P, Wilcox MH, Wordsworth S, Wyllie D, Xu L, Crook DW; COMPASS-TB Study Group.

Lancet Respir Med. 2016 Jan;4(1):49-58. doi: 10.1016/S2213-2600(15)00466-X. Epub 2015 Dec 4.


Draft Genome Sequences of Three Mycobacterium chimaera Respiratory Isolates.

Mac Aogáin M, Roycroft E, Raftery P, Mok S, Fitzgibbon M, Rogers TR.

Genome Announc. 2015 Dec 3;3(6). pii: e01409-15. doi: 10.1128/genomeA.01409-15.


Enhanced Tracking of Nosocomial Transmission of Endemic Sequence Type 22 Methicillin-Resistant Staphylococcus aureus Type IV Isolates among Patients and Environmental Sites by Use of Whole-Genome Sequencing.

Kinnevey PM, Shore AC, Mac Aogáin M, Creamer E, Brennan GI, Humphreys H, Rogers TR, O'Connell B, Coleman DC.

J Clin Microbiol. 2016 Feb;54(2):445-8. doi: 10.1128/JCM.02662-15. Epub 2015 Nov 18.


Memory Th1 Cells Are Protective in Invasive Staphylococcus aureus Infection.

Brown AF, Murphy AG, Lalor SJ, Leech JM, O'Keeffe KM, Mac Aogáin M, O'Halloran DP, Lacey KA, Tavakol M, Hearnden CH, Fitzgerald-Hughes D, Humphreys H, Fennell JP, van Wamel WJ, Foster TJ, Geoghegan JA, Lavelle EC, Rogers TR, McLoughlin RM.

PLoS Pathog. 2015 Nov 5;11(11):e1005226. doi: 10.1371/journal.ppat.1005226. eCollection 2015.


Characterization of Escherichia coli bloodstream isolates associated with mortality.

Miajlovic H, Aogáin MM, Collins CJ, Rogers TR, Smith SG.

J Med Microbiol. 2016 Jan;65(1):71-9.


Emergence of persistent Aspergillus terreus colonisation in a child with cystic fibrosis.

Dunne K, Prior AR, Murphy K, Wall N, Leen G, Rogers TR, Elnazir B, Greally P, Renwick J, Murphy P.

Med Mycol Case Rep. 2015 Jul 29;9:26-30. doi: 10.1016/j.mmcr.2015.07.002. eCollection 2015 Sep. No abstract available.


Erratum for Abdolrasouli et al., Genomic Context of Azole Resistance Mutations in Aspergillus fumigatus Determined Using Whole-Genome Sequencing.

Abdolrasouli A, Rhodes J, Beale MA, Hagen F, Rogers TR, Chowdhary A, Meis JF, Armstrong-James D, Fisher MC.

MBio. 2015 Jul 14;6(4):e00939. doi: 10.1128/mBio.00939-15. No abstract available.


Molecular epidemiology of Mycobacterium abscessus complex isolates in Ireland.

O'Driscoll C, Konjek J, Heym B, Fitzgibbon MM, Plant BJ, Ní Chróinín M, Mullane D, Lynch-Healy M, Corcoran GD, Schaffer K, Rogers TR, Prentice MB.

J Cyst Fibros. 2016 Mar;15(2):179-85. doi: 10.1016/j.jcf.2015.05.007. Epub 2015 Jun 10.


Genomic Context of Azole Resistance Mutations in Aspergillus fumigatus Determined Using Whole-Genome Sequencing.

Abdolrasouli A, Rhodes J, Beale MA, Hagen F, Rogers TR, Chowdhary A, Meis JF, Armstrong-James D, Fisher MC.

MBio. 2015 Jun 2;6(3):e00536. doi: 10.1128/mBio.00536-15. Erratum in: MBio. 2015;6(4):e00939.


Candida albicans stimulates IL-23 release by human dendritic cells and downstream IL-17 secretion by Vδ1 T cells.

Maher CO, Dunne K, Comerford R, O'Dea S, Loy A, Woo J, Rogers TR, Mulcahy F, Dunne PJ, Doherty DG.

J Immunol. 2015 Jun 15;194(12):5953-60. doi: 10.4049/jimmunol.1403066. Epub 2015 May 11.


Whole-genome sequencing improves discrimination of relapse from reinfection and identifies transmission events among patients with recurrent Clostridium difficile infections.

Mac Aogáin M, Moloney G, Kilkenny S, Kelleher M, Kelleghan M, Boyle B, Rogers TR.

J Hosp Infect. 2015 Jun;90(2):108-16. doi: 10.1016/j.jhin.2015.01.021. Epub 2015 Feb 26.


Detailed characterization of the first high-level azithromycin-resistant Neisseria gonorrhoeae cases in Ireland.

Lynagh Y, Mac Aogáin M, Walsh A, Rogers TR, Unemo M, Crowley B.

J Antimicrob Chemother. 2015 Aug;70(8):2411-3. doi: 10.1093/jac/dkv106. Epub 2015 Apr 22. No abstract available.


Tuberculosis incidence in the Irish Traveller population in Ireland from 2002 to 2013.

O'Toole RF, Jackson S, Hanway A, O'Donnell J, Comiskey CM, Rogers TR, O'Flanagan D.

Epidemiol Infect. 2015 Oct;143(13):2849-55. doi: 10.1017/S0950268815000138. Epub 2015 Feb 12.


Typhlocolitis associated with Clostridium difficile ribotypes 078 and 110 in neonatal piglets from a commercial Irish pig herd.

McElroy MC, Hill M, Moloney G, Mac Aogáin M, McGettrick S, O'Doherty Á, Rogers TR.

Ir Vet J. 2016 Aug 19;69:10. doi: 10.1186/s13620-016-0070-9. eCollection 2015.


Draft Genome Sequence of the First Isolate of Extensively Drug-Resistant Mycobacterium tuberculosis in Ireland.

Roycroft E, Mac Aogáin M, O'Toole RF, Fitzgibbon M, Rogers TR.

Genome Announc. 2014 Oct 9;2(5). pii: e01002-14. doi: 10.1128/genomeA.01002-14.


Gene expression profiles of human dendritic cells interacting with Aspergillus fumigatus in a bilayer model of the alveolar epithelium/endothelium interface.

Morton CO, Fliesser M, Dittrich M, Mueller T, Bauer R, Kneitz S, Hope W, Rogers TR, Einsele H, Loeffler J.

PLoS One. 2014 May 28;9(5):e98279. doi: 10.1371/journal.pone.0098279. eCollection 2014.


Draft Genome Sequence of the First Isolate of Extensively Drug-Resistant Mycobacterium tuberculosis in New Zealand.

O'Toole RF, Johari BM, Mac Aogáin M, Rogers TR, Bower JE, Basu I, Freeman JT.

Genome Announc. 2014 May 8;2(3). pii: e00319-14. doi: 10.1128/genomeA.00319-14.


Staphylococcus aureus Colonization: Modulation of Host Immune Response and Impact on Human Vaccine Design.

Brown AF, Leech JM, Rogers TR, McLoughlin RM.

Front Immunol. 2014 Jan 8;4:507. doi: 10.3389/fimmu.2013.00507. Review.


Response of extraintestinal pathogenic Escherichia coli to human serum reveals a protective role for Rcs-regulated exopolysaccharide colanic acid.

Miajlovic H, Cooke NM, Moran GP, Rogers TR, Smith SG.

Infect Immun. 2014 Jan;82(1):298-305. doi: 10.1128/IAI.00800-13. Epub 2013 Oct 28.


Combined real-time PCR and galactomannan surveillance improves diagnosis of invasive aspergillosis in high risk patients with haematological malignancies.

Rogers TR, Morton CO, Springer J, Conneally E, Heinz W, Kenny C, Frost S, Einsele H, Loeffler J.

Br J Haematol. 2013 May;161(4):517-24. doi: 10.1111/bjh.12285. Epub 2013 Mar 11.


Multicenter comparison of serum and whole-blood specimens for detection of Aspergillus DNA in high-risk hematological patients.

Springer J, Morton CO, Perry M, Heinz WJ, Paholcsek M, Alzheimer M, Rogers TR, Barnes RA, Einsele H, Loeffler J, White PL.

J Clin Microbiol. 2013 May;51(5):1445-50. doi: 10.1128/JCM.03322-12. Epub 2013 Feb 20.


Interferon gamma release assays for the diagnosis of latent TB infection in HIV-infected individuals in a low TB burden country.

Cheallaigh CN, Fitzgerald I, Grace J, Singh GJ, El-Eraki N, Gibbons N, Keane J, Rogers TR, Clarke S, Bergin C.

PLoS One. 2013;8(1):e53330. doi: 10.1371/journal.pone.0053330. Epub 2013 Jan 30.


A snapshot of genetic lineages of Mycobacterium tuberculosis in Ireland over a two-year period, 2010 and 2011.

Fitzgibbon MM, Gibbons N, Roycroft E, Jackson S, O'Donnell J, O'Flanagan D, Rogers TR.

Euro Surveill. 2013 Jan 17;18(3). pii: 20367.


Direct interaction studies between Aspergillus fumigatus and human immune cells; what have we learned about pathogenicity and host immunity?

Morton CO, Bouzani M, Loeffler J, Rogers TR.

Front Microbiol. 2012 Dec 3;3:413. doi: 10.3389/fmicb.2012.00413. eCollection 2012.


RT-qPCR detection of Aspergillus fumigatus RNA in vitro and in a murine model of invasive aspergillosis utilizing the PAXgene® and Tempus™ RNA stabilization systems.

Morton CO, de Luca A, Romani L, Rogers TR.

Med Mycol. 2012 Aug;50(6):661-6. doi: 10.3109/13693786.2011.652200. Epub 2012 Jan 23.


European expert opinion on the management of invasive candidiasis in adults.

Kullberg BJ, Verweij PE, Akova M, Arendrup MC, Bille J, Calandra T, Cuenca-Estrella M, Herbrecht R, Jacobs F, Kalin M, Kibbler CC, Lortholary O, Martino P, Meis JF, Muñoz P, Odds FC, De Pauw BE, Rex JH, Roilides E, Rogers TR, Ruhnke M, Ullmann AJ, Uzun Ö, Vandewoude K, Vincent JL, Donnelly JP.

Clin Microbiol Infect. 2011 Sep;17 Suppl 5:1-12. doi: 10.1111/j.1469-0691.2011.03615.x.


A role for TLR4 in Clostridium difficile infection and the recognition of surface layer proteins.

Ryan A, Lynch M, Smith SM, Amu S, Nel HJ, McCoy CE, Dowling JK, Draper E, O'Reilly V, McCarthy C, O'Brien J, Ní Eidhin D, O'Connell MJ, Keogh B, Morton CO, Rogers TR, Fallon PG, O'Neill LA, Kelleher D, Loscher CE.

PLoS Pathog. 2011 Jun;7(6):e1002076. doi: 10.1371/journal.ppat.1002076. Epub 2011 Jun 30.


Antifungal prophylaxis during treatment for haematological malignancies: are we there yet?

Rogers TR, Slavin MA, Donnelly JP.

Br J Haematol. 2011 Jun;153(6):681-97. doi: 10.1111/j.1365-2141.2011.08650.x. Epub 2011 Apr 20. Review.


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