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Total bacterial load, inflammation, and structural lung disease in paediatric cystic fibrosis.

Taylor SL, Leong LEX, Ivey KL, Wesselingh S, Grimwood K, Wainwright CE, Rogers GB; Australasian Cystic Fibrosis Bronchoalveolar Lavage (ACFBAL) study group.

J Cyst Fibros. 2020 Mar 18. pii: S1569-1993(20)30079-5. doi: 10.1016/j.jcf.2020.03.008. [Epub ahead of print]


Safety and Efficacy of Using Nuts to Improve Bowel Health in Hemodialysis Patients.

Lambert K, Bird L, Borst AC, Fuller A, Wang Y, Rogers GB, Stanford J, Sanderson-Smith ML, Williams JG, McWhinney BC, Neale EP, Probst Y, Lonergan M.

J Ren Nutr. 2020 Jan 27. pii: S1051-2276(19)30356-5. doi: 10.1053/j.jrn.2019.10.002. [Epub ahead of print]


Improving Risk-Benefit in Faecal Transplantation through Microbiome Screening.

Papanicolas LE, Gordon DL, Wesselingh SL, Rogers GB.

Trends Microbiol. 2020 Jan 15. pii: S0966-842X(19)30324-5. doi: 10.1016/j.tim.2019.12.009. [Epub ahead of print] Review.


DNA extraction approaches substantially influence the assessment of the human breast milk microbiome.

Douglas CA, Ivey KL, Papanicolas LE, Best KP, Muhlhausler BS, Rogers GB.

Sci Rep. 2020 Jan 10;10(1):123. doi: 10.1038/s41598-019-55568-y.


Changes in the Composition of the Gut Microbiota and the Blood Transcriptome in Preterm Infants at Less than 29 Weeks Gestation Diagnosed with Bronchopulmonary Dysplasia.

Ryan FJ, Drew DP, Douglas C, Leong LEX, Moldovan M, Lynn M, Fink N, Sribnaia A, Penttila I, McPhee AJ, Collins CT, Makrides M, Gibson RA, Rogers GB, Lynn DJ.

mSystems. 2019 Oct 29;4(5). pii: e00484-19. doi: 10.1128/mSystems.00484-19.


Role of Dietary Flavonoid Compounds in Driving Patterns of Microbial Community Assembly.

Ivey KL, Chan AT, Izard J, Cassidy A, Rogers GB, Rimm EB.

mBio. 2019 Sep 24;10(5). pii: e01205-19. doi: 10.1128/mBio.01205-19.


The gut microbiome regulates host glucose homeostasis via peripheral serotonin.

Martin AM, Yabut JM, Choo JM, Page AJ, Sun EW, Jessup CF, Wesselingh SL, Khan WI, Rogers GB, Steinberg GR, Keating DJ.

Proc Natl Acad Sci U S A. 2019 Oct 1;116(40):19802-19804. doi: 10.1073/pnas.1909311116. Epub 2019 Sep 16.


Examining the Evidence for an Adult Healthy Middle Ear Microbiome.

Jervis-Bardy J, Leong LEX, Papanicolas LE, Ivey KL, Chawla S, Woods CM, Frauenfelder C, Ooi EH, Rogers GB.

mSphere. 2019 Sep 4;4(5). pii: e00456-19. doi: 10.1128/mSphere.00456-19.


Lean NAFLD: A Distinct Entity Shaped by Differential Metabolic Adaptation.

Chen F, Esmaili S, Rogers GB, Bugianesi E, Petta S, Marchesini G, Bayoumi A, Metwally M, Azardaryany MK, Coulter S, Choo JM, Younes R, Rosso C, Liddle C, Adams LA, Craxì A, George J, Eslam M.

Hepatology. 2019 Aug 23. doi: 10.1002/hep.30908. [Epub ahead of print]


The impact of CFTR modulator therapies on CF airway microbiology.

Rogers GB, Taylor SL, Hoffman LR, Burr LD.

J Cyst Fibros. 2019 Aug 12. pii: S1569-1993(19)30829-X. doi: 10.1016/j.jcf.2019.07.008. [Epub ahead of print] Review.


Soluble fibre supplementation with and without a probiotic in adults with asthma: A 7-day randomised, double blind, three way cross-over trial.

McLoughlin R, Berthon BS, Rogers GB, Baines KJ, Leong LEX, Gibson PG, Williams EJ, Wood LG.

EBioMedicine. 2019 Aug;46:473-485. doi: 10.1016/j.ebiom.2019.07.048. Epub 2019 Jul 31.


The Capacity of the Fecal Microbiota From Malawian Infants to Ferment Resistant Starch.

Wang Y, Mortimer EK, Katundu KGH, Kalanga N, Leong LEX, Gopalsamy GL, Christophersen CT, Richard AC, Shivasami A, Abell GCJ, Young GP, Rogers GB.

Front Microbiol. 2019 Jun 26;10:1459. doi: 10.3389/fmicb.2019.01459. eCollection 2019.


The Influence of the Gut Microbiome on Host Metabolism Through the Regulation of Gut Hormone Release.

Martin AM, Sun EW, Rogers GB, Keating DJ.

Front Physiol. 2019 Apr 16;10:428. doi: 10.3389/fphys.2019.00428. eCollection 2019.


Mice lacking Casp1, Ifngr and Nos2 genes exhibit altered depressive- and anxiety-like behaviour, and gut microbiome composition.

Inserra A, Choo JM, Lewis MD, Rogers GB, Wong ML, Licinio J.

Sci Rep. 2019 Apr 23;9(1):6456. doi: 10.1038/s41598-018-38055-8.


Effects of almond consumption on metabolic function and liver fat in overweight and obese adults with elevated fasting blood glucose: A randomised controlled trial.

Bowen J, Luscombe-Marsh ND, Stonehouse W, Tran C, Rogers GB, Johnson N, Thompson CH, Brinkworth GD.

Clin Nutr ESPEN. 2019 Apr;30:10-18. doi: 10.1016/j.clnesp.2018.12.088. Epub 2019 Jan 11.


Do we really understand how faecal microbiota transplantation works? Authors' reply.

Papanicolas LE, Wesselingh SL, Rogers GB.

EBioMedicine. 2019 Apr;42:40. doi: 10.1016/j.ebiom.2019.03.030. Epub 2019 Mar 19. No abstract available.


The nasopharyngeal microbiome and LRTIs in infants.

Rogers GB.

Lancet Respir Med. 2019 May;7(5):369-371. doi: 10.1016/S2213-2600(18)30495-8. Epub 2019 Mar 15. No abstract available.


Case report: Identification of intra-laboratory blood culture contamination with Staphylococcus aureus by whole genome sequencing.

Ashokan A, Papanicolas LE, Leong LEX, Theodossi M, Daniel S, Wesselingh SL, Rogers GB, Gordon DL.

Diagn Microbiol Infect Dis. 2019 Aug;94(4):331-333. doi: 10.1016/j.diagmicrobio.2019.02.016. Epub 2019 Feb 23.


Long-Term Azithromycin Reduces Haemophilus influenzae and Increases Antibiotic Resistance in Severe Asthma.

Taylor SL, Leong LEX, Mobegi FM, Choo JM, Wesselingh S, Yang IA, Upham JW, Reynolds PN, Hodge S, James AL, Jenkins C, Peters MJ, Baraket M, Marks GB, Gibson PG, Rogers GB, Simpson JL.

Am J Respir Crit Care Med. 2019 Aug 1;200(3):309-317. doi: 10.1164/rccm.201809-1739OC.


Inclusivity and equity in human microbiome research.

Rogers GB, Ward J, Brown A, Wesselingh SL.

Lancet. 2019 Feb 23;393(10173):728-729. doi: 10.1016/S0140-6736(18)33204-5. No abstract available.


Bacterial viability in faecal transplants: Which bacteria survive?

Papanicolas LE, Choo JM, Wang Y, Leong LEX, Costello SP, Gordon DL, Wesselingh SL, Rogers GB.

EBioMedicine. 2019 Mar;41:509-516. doi: 10.1016/j.ebiom.2019.02.023. Epub 2019 Feb 19.


Acute Colitis Drives Tolerance by Persistently Altering the Epithelial Barrier and Innate and Adaptive Immunity.

Wardill HR, Choo JM, Dmochowska N, Mavrangelos C, Campaniello MA, Bowen JM, Rogers GB, Hughes PA.

Inflamm Bowel Dis. 2019 Jun 18;25(7):1196-1207. doi: 10.1093/ibd/izz011.


Draft Genome Sequence of a Non-O1/O139 Vibrio cholerae Strain Isolated from a Patient Presenting with Dysuria.

Leong LEX, Gordon DL, Rogers GB.

Microbiol Resour Announc. 2018 Jul 26;7(3). pii: e00883-18. doi: 10.1128/MRA.00883-18. eCollection 2018 Jul.


Optimisation of a propidium monoazide based method to determine the viability of microbes in faecal slurries for transplantation.

Papanicolas LE, Wang Y, Choo JM, Gordon DL, Wesselingh SL, Rogers GB.

J Microbiol Methods. 2019 Jan;156:40-45. doi: 10.1016/j.mimet.2018.12.001. Epub 2018 Dec 4.


B Part of It study: a longitudinal study to assess carriage of Neisseria meningitidis in first year university students in South Australia.

McMillan M, Walters L, Mark T, Lawrence A, Leong LEX, Sullivan T, Rogers GB, Andrews RM, Marshall HS.

Hum Vaccin Immunother. 2019;15(4):987-994. doi: 10.1080/21645515.2018.1551672. Epub 2019 Jan 4.


Opportunistic bacteria confer the ability to ferment prebiotic starch in the adult cystic fibrosis gut.

Wang Y, Leong LEX, Keating RL, Kanno T, Abell GCJ, Mobegi FM, Choo JM, Wesselingh SL, Mason AJ, Burr LD, Rogers GB.

Gut Microbes. 2019;10(3):367-381. doi: 10.1080/19490976.2018.1534512. Epub 2018 Oct 25.


Burkholderia lata Infections from Intrinsically Contaminated Chlorhexidine Mouthwash, Australia, 2016.

Leong LEX, Lagana D, Carter GP, Wang Q, Smith K, Stinear TP, Shaw D, Sintchenko V, Wesselingh SL, Bastian I, Rogers GB.

Emerg Infect Dis. 2018 Nov;24(11):2109-2111. doi: 10.3201/eid2411.171929.


Antibiotic stewardship in aged care facilities.

Rogers GB, Papanicolas LE, Wesselingh SL.

Lancet Infect Dis. 2018 Oct;18(10):1061-1063. doi: 10.1016/S1473-3099(18)30548-6. No abstract available.


The contribution of respiratory microbiome analysis to a treatable traits model of care.

Taylor SL, O'Farrell HE, Simpson JL, Yang IA, Rogers GB.

Respirology. 2019 Jan;24(1):19-28. doi: 10.1111/resp.13411. Epub 2018 Oct 3. Review.


Understanding the impact of antibiotic therapies on the respiratory tract resistome: a novel pooled-template metagenomic sequencing strategy.

Taylor SL, Leong LEX, Mobegi FM, Choo JM, Burr LD, Wesselingh S, Rogers GB.

Multidiscip Respir Med. 2018 Aug 9;13(Suppl 1):30. doi: 10.1186/s40248-018-0140-9. eCollection 2018.


PPARγ is reduced in the airways of non-CF bronchiectasis subjects and is inversely correlated with the presence of Pseudomonas aeruginosa.

Burr LD, Rogers GB, Chen AC, Taylor SL, Bowler SD, Keating RL, Martin ML, Hasnain SZ, McGuckin MA.

PLoS One. 2018 Aug 16;13(8):e0202296. doi: 10.1371/journal.pone.0202296. eCollection 2018.


The Microbiota-Inflammasome Hypothesis of Major Depression.

Inserra A, Rogers GB, Licinio J, Wong ML.

Bioessays. 2018 Sep;40(9):e1800027. doi: 10.1002/bies.201800027. Epub 2018 Jul 13. Review.


Early-Life Antibiotic-Driven Dysbiosis Leads to Dysregulated Vaccine Immune Responses in Mice.

Lynn MA, Tumes DJ, Choo JM, Sribnaia A, Blake SJ, Leong LEX, Young GP, Marshall HS, Wesselingh SL, Rogers GB, Lynn DJ.

Cell Host Microbe. 2018 May 9;23(5):653-660.e5. doi: 10.1016/j.chom.2018.04.009.


Impact of Long-Term Erythromycin Therapy on the Oropharyngeal Microbiome and Resistance Gene Reservoir in Non-Cystic Fibrosis Bronchiectasis.

Choo JM, Abell GCJ, Thomson R, Morgan L, Waterer G, Gordon DL, Taylor SL, Leong LEX, Wesselingh SL, Burr LD, Rogers GB.

mSphere. 2018 Apr 18;3(2). pii: e00103-18. doi: 10.1128/mSphere.00103-18. Print 2018 Apr 25.


Intestinal Microbiota Composition in Sudden Infant Death Syndrome and Age-Matched Controls.

Leong LEX, Taylor SL, Shivasami A, Goldwater PN, Rogers GB.

J Pediatr. 2017 Dec;191:63-68.e1. doi: 10.1016/j.jpeds.2017.08.070.


Inflammation, age and changing microbiology: the search for causation in the cystic fibrosis airways.

Rogers GB.

Eur Respir J. 2017 Nov 16;50(5). pii: 1701935. doi: 10.1183/13993003.01935-2017. Print 2017 Nov. No abstract available.


Not Just Antibiotics: Is Cancer Chemotherapy Driving Antimicrobial Resistance?

Papanicolas LE, Gordon DL, Wesselingh SL, Rogers GB.

Trends Microbiol. 2018 May;26(5):393-400. doi: 10.1016/j.tim.2017.10.009. Epub 2017 Nov 13. Review.


Clinical and symptom scores are significantly correlated with fecal microbiota features in patients with symptomatic uncomplicated diverticular disease: a pilot study.

Kvasnovsky CL, Leong LEX, Choo JM, Abell GCJ, Papagrigoriadis S, Bruce KD, Rogers GB.

Eur J Gastroenterol Hepatol. 2018 Jan;30(1):107-112. doi: 10.1097/MEG.0000000000000995.


Infection's Sweet Tooth: How Glycans Mediate Infection and Disease Susceptibility.

Taylor SL, McGuckin MA, Wesselingh S, Rogers GB.

Trends Microbiol. 2018 Feb;26(2):92-101. doi: 10.1016/j.tim.2017.09.011. Epub 2017 Oct 24. Review.


Antibiotic exposure and interpersonal variance mask the effect of ivacaftor on respiratory microbiota composition.

Peleg AY, Choo JM, Langan KM, Edgeworth D, Keating D, Wilson J, Rogers GB, Kotsimbos T.

J Cyst Fibros. 2018 Jan;17(1):50-56. doi: 10.1016/j.jcf.2017.08.002. Epub 2017 Oct 15.


Draft Genome Sequences of Two Enterobacter cloacae subsp. cloacae Strains Isolated from Australian Hematology Patients with Bacteremia.

Leong LEX, Shaw D, Papanicolas L, Lagana D, Bastian I, Rogers GB.

Genome Announc. 2017 Aug 17;5(33). pii: e00756-17. doi: 10.1128/genomeA.00756-17.


How can the cystic fibrosis respiratory microbiome influence our clinical decision-making?

Rogers GB, Bruce KD, Hoffman LR.

Curr Opin Pulm Med. 2017 Nov;23(6):536-543. doi: 10.1097/MCP.0000000000000419. Review.


Low-Dose Nitric Oxide as Targeted Anti-biofilm Adjunctive Therapy to Treat Chronic Pseudomonas aeruginosa Infection in Cystic Fibrosis.

Howlin RP, Cathie K, Hall-Stoodley L, Cornelius V, Duignan C, Allan RN, Fernandez BO, Barraud N, Bruce KD, Jefferies J, Kelso M, Kjelleberg S, Rice SA, Rogers GB, Pink S, Smith C, Sukhtankar PS, Salib R, Legg J, Carroll M, Daniels T, Feelisch M, Stoodley P, Clarke SC, Connett G, Faust SN, Webb JS.

Mol Ther. 2017 Sep 6;25(9):2104-2116. doi: 10.1016/j.ymthe.2017.06.021. Epub 2017 Jul 24.


Effect of azithromycin on asthma exacerbations and quality of life in adults with persistent uncontrolled asthma (AMAZES): a randomised, double-blind, placebo-controlled trial.

Gibson PG, Yang IA, Upham JW, Reynolds PN, Hodge S, James AL, Jenkins C, Peters MJ, Marks GB, Baraket M, Powell H, Taylor SL, Leong LEX, Rogers GB, Simpson JL.

Lancet. 2017 Aug 12;390(10095):659-668. doi: 10.1016/S0140-6736(17)31281-3. Epub 2017 Jul 4.


Inflammatory phenotypes in patients with severe asthma are associated with distinct airway microbiology.

Taylor SL, Leong LEX, Choo JM, Wesselingh S, Yang IA, Upham JW, Reynolds PN, Hodge S, James AL, Jenkins C, Peters MJ, Baraket M, Marks GB, Gibson PG, Simpson JL, Rogers GB.

J Allergy Clin Immunol. 2018 Jan;141(1):94-103.e15. doi: 10.1016/j.jaci.2017.03.044. Epub 2017 May 4.


Inbred Mouse Populations Exhibit Intergenerational Changes in Intestinal Microbiota Composition and Function Following Introduction to a Facility.

Choo JM, Trim PJ, Leong LEX, Abell GCJ, Brune C, Jeffries N, Wesselingh S, Dear TN, Snel MF, Rogers GB.

Front Microbiol. 2017 Apr 11;8:608. doi: 10.3389/fmicb.2017.00608. eCollection 2017.


The Diverse Metabolic Roles of Peripheral Serotonin.

Martin AM, Young RL, Leong L, Rogers GB, Spencer NJ, Jessup CF, Keating DJ.

Endocrinology. 2017 May 1;158(5):1049-1063. doi: 10.1210/en.2016-1839. Review.


Divergent Relationships between Fecal Microbiota and Metabolome following Distinct Antibiotic-Induced Disruptions.

Choo JM, Kanno T, Zain NM, Leong LE, Abell GC, Keeble JE, Bruce KD, Mason AJ, Rogers GB.

mSphere. 2017 Feb 8;2(1). pii: e00005-17. doi: 10.1128/mSphere.00005-17. eCollection 2017 Jan-Feb.


The CF gastrointestinal microbiome: Structure and clinical impact.

Rogers GB, Narkewicz MR, Hoffman LR.

Pediatr Pulmonol. 2016 Oct;51(S44):S35-S44. doi: 10.1002/ppul.23544. Review.


FUT2 genotype influences lung function, exacerbation frequency and airway microbiota in non-CF bronchiectasis.

Taylor SL, Woodman RJ, Chen AC, Burr LD, Gordon DL, McGuckin MA, Wesselingh S, Rogers GB.

Thorax. 2017 Apr;72(4):304-310. doi: 10.1136/thoraxjnl-2016-208775. Epub 2016 Aug 8.


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