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Legofit: estimating population history from genetic data.

Rogers AR.

BMC Bioinformatics. 2019 Oct 28;20(1):526. doi: 10.1186/s12859-019-3154-1.


An Investigation of the Potential Antifungal Properties of CNC-2 in Caenorhabditis elegans.

Zehrbach AMD, Rogers AR, Tarr DEK.

J Nematol. 2017 Dec;49(4):472-476.


Reply to Mafessoni and Prüfer: Inferences with and without singleton site patterns.

Rogers AR, Bohlender RJ, Huff CD.

Proc Natl Acad Sci U S A. 2017 Nov 28;114(48):E10258-E10260. doi: 10.1073/pnas.1717085114. Epub 2017 Nov 14. No abstract available.


Early history of Neanderthals and Denisovans.

Rogers AR, Bohlender RJ, Huff CD.

Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):9859-9863. doi: 10.1073/pnas.1706426114. Epub 2017 Aug 7.


Evolutionary history of Tibetans inferred from whole-genome sequencing.

Hu H, Petousi N, Glusman G, Yu Y, Bohlender R, Tashi T, Downie JM, Roach JC, Cole AM, Lorenzo FR, Rogers AR, Brunkow ME, Cavalleri G, Hood L, Alpatty SM, Prchal JT, Jorde LB, Robbins PA, Simonson TS, Huff CD.

PLoS Genet. 2017 Apr 27;13(4):e1006675. doi: 10.1371/journal.pgen.1006675. eCollection 2017 Apr.


Patient-provider discussions about lung cancer screening: Results from the 2012/2013 Kansas Adult Tobacco Survey.

Rogers AR, Christensen T, Welsh EM, Faseru B.

Prev Med Rep. 2015 Jun 26;2:577-9. doi: 10.1016/j.pmedr.2015.06.018. eCollection 2015.


Bias in estimators of archaic admixture.

Rogers AR, Bohlender RJ.

Theor Popul Biol. 2015 Mar;100C:63-78. doi: 10.1016/j.tpb.2014.12.006. Epub 2015 Jan 6.


How population growth affects linkage disequilibrium.

Rogers AR.

Genetics. 2014 Aug;197(4):1329-41. doi: 10.1534/genetics.114.166454. Epub 2014 Jun 6.


Calving body condition score affects indicators of health in grazing dairy cows.

Roche JR, Macdonald KA, Schütz KE, Matthews LR, Verkerk GA, Meier S, Loor JJ, Rogers AR, McGowan J, Morgan SR, Taukiri S, Webster JR.

J Dairy Sci. 2013 Sep;96(9):5811-25. doi: 10.3168/jds.2013-6600. Epub 2013 Jul 17.


Behavioral and physiological effects of a short-term feed restriction in lactating dairy cattle with different body condition scores at calving.

Schütz KE, Cox NR, Macdonald KA, Roche JR, Verkerk GA, Rogers AR, Tucker CB, Matthews LR, Meier S, Webster JR.

J Dairy Sci. 2013 Jul;96(7):4465-76. doi: 10.3168/jds.2012-6507. Epub 2013 May 16.


Genetic relatedness to sisters' children has been underestimated.

Rogers AR.

Proc Biol Sci. 2013 Jan 22;280(1751):20121937. doi: 10.1098/rspb.2012.1937.


The effect of temperament and responsiveness towards humans on the behavior, physiology and milk production of multi-parous dairy cows in a familiar and novel milking environment.

Sutherland MA, Rogers AR, Verkerk GA.

Physiol Behav. 2012 Oct 10;107(3):329-37. doi: 10.1016/j.physbeh.2012.07.013. Epub 2012 Aug 23.


Development and mineralization of embryonic avian scleral ossicles.

Zhang G, Boyle DL, Zhang Y, Rogers AR, Conrad GW.

Mol Vis. 2012;18:348-61. Epub 2012 Feb 5.


Configuring robust DNA strand displacement reactions for in situ molecular analyses.

Duose DY, Schweller RM, Zimak J, Rogers AR, Hittelman WN, Diehl MR.

Nucleic Acids Res. 2012 Apr;40(7):3289-98. doi: 10.1093/nar/gkr1209. Epub 2011 Dec 11.


Productive cooperation among processive motors depends inversely on their mechanochemical efficiency.

Driver JW, Jamison DK, Uppulury K, Rogers AR, Kolomeisky AB, Diehl MR.

Biophys J. 2011 Jul 20;101(2):386-95. doi: 10.1016/j.bpj.2011.05.067.


Dairy cattle prefer shade over sprinklers: effects on behavior and physiology.

Schütz KE, Rogers AR, Cox NR, Webster JR, Tucker CB.

J Dairy Sci. 2011 Jan;94(1):273-83. doi: 10.3168/jds.2010-3608.


Two kinesins transport cargo primarily via the action of one motor: implications for intracellular transport.

Jamison DK, Driver JW, Rogers AR, Constantinou PE, Diehl MR.

Biophys J. 2010 Nov 3;99(9):2967-77. doi: 10.1016/j.bpj.2010.08.025.


Coupling between motor proteins determines dynamic behaviors of motor protein assemblies.

Driver JW, Rogers AR, Jamison DK, Das RK, Kolomeisky AB, Diehl MR.

Phys Chem Chem Phys. 2010 Sep 21;12(35):10398-405. doi: 10.1039/c0cp00117a. Epub 2010 Jun 25.


Influence of calibration method on distortion-product otoacoustic emission measurements: I. test performance.

Burke SR, Rogers AR, Neely ST, Kopun JG, Tan H, Gorga MP.

Ear Hear. 2010 Aug;31(4):533-45. doi: 10.1097/AUD.0b013e3181d86b3d.


Influence of calibration method on distortion-product otoacoustic emission measurements: II. threshold prediction.

Rogers AR, Burke SR, Kopun JG, Tan H, Neely ST, Gorga MP.

Ear Hear. 2010 Aug;31(4):546-54. doi: 10.1097/AUD.0b013e3181d86b59.


Mobile elements reveal small population size in the ancient ancestors of Homo sapiens.

Huff CD, Xing J, Rogers AR, Witherspoon D, Jorde LB.

Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):2147-52. doi: 10.1073/pnas.0909000107. Epub 2010 Jan 19.


The amount of shade influences the behavior and physiology of dairy cattle.

Schütz KE, Rogers AR, Poulouin YA, Cox NR, Tucker CB.

J Dairy Sci. 2010 Jan;93(1):125-33. doi: 10.3168/jds.2009-2416.


Detecting positive selection from genome scans of linkage disequilibrium.

Huff CD, Harpending HC, Rogers AR.

BMC Genomics. 2010 Jan 5;11:8. doi: 10.1186/1471-2164-11-8.


Chronic hepatitis, hepatic dysplasia, fibrosis, and biliary hyperplasia in hamsters naturally infected with a novel Helicobacter classified in the H. bilis cluster.

Fox JG, Shen Z, Muthupalani S, Rogers AR, Kirchain SM, Dewhirst FE.

J Clin Microbiol. 2009 Nov;47(11):3673-81. doi: 10.1128/JCM.00879-09. Epub 2009 Sep 16.


Negative interference dominates collective transport of kinesin motors in the absence of load.

Rogers AR, Driver JW, Constantinou PE, Kenneth Jamison D, Diehl MR.

Phys Chem Chem Phys. 2009 Jun 28;11(24):4882-9. doi: 10.1039/b900964g. Epub 2009 Apr 20.


Linkage disequilibrium between loci with unknown phase.

Rogers AR, Huff C.

Genetics. 2009 Jul;182(3):839-44. doi: 10.1534/genetics.108.093153. Epub 2009 May 11.


Estimating the age of retrotransposon subfamilies using maximum likelihood.

Marchani EE, Xing J, Witherspoon DJ, Jorde LB, Rogers AR.

Genomics. 2009 Jul;94(1):78-82. doi: 10.1016/j.ygeno.2009.04.002. Epub 2009 Apr 18.


Effects of local anesthetic and a nonsteroidal antiinflammatory drug on pain responses of dairy calves to hot-iron dehorning.

Stewart M, Stookey JM, Stafford KJ, Tucker CB, Rogers AR, Dowling SK, Verkerk GA, Schaefer AL, Webster JR.

J Dairy Sci. 2009 Apr;92(4):1512-9. doi: 10.3168/jds.2008-1578.


General practitioners' views on reattribution for patients with medically unexplained symptoms: a questionnaire and qualitative study.

Dowrick C, Gask L, Hughes JG, Charles-Jones H, Hogg JA, Peters S, Salmon P, Rogers AR, Morriss RK.

BMC Fam Pract. 2008 Aug 19;9:46. doi: 10.1186/1471-2296-9-46.


Brief communication: the Thule migration: rejecting population histories using computer simulation.

Marchani EE, Rogers AR, O'Rourke DH.

Am J Phys Anthropol. 2007 Oct;134(2):281-4.


Genetic similarities within and between human populations.

Witherspoon DJ, Wooding S, Rogers AR, Marchani EE, Watkins WS, Batzer MA, Jorde LB.

Genetics. 2007 May;176(1):351-9. Epub 2007 Mar 4.


Ancestral alleles and population origins: inferences depend on mutation rate.

Rogers AR, Wooding S, Huff CD, Batzer MA, Jorde LB.

Mol Biol Evol. 2007 Apr;24(4):990-7. Epub 2007 Jan 30.


Human population genetic structure and diversity inferred from polymorphic L1(LINE-1) and Alu insertions.

Witherspoon DJ, Marchani EE, Watkins WS, Ostler CT, Wooding SP, Anders BA, Fowlkes JD, Boissinot S, Furano AV, Ray DA, Rogers AR, Batzer MA, Jorde LB.

Hum Hered. 2006;62(1):30-46. Epub 2006 Sep 21.


Modeling the amplification dynamics of human Alu retrotransposons.

Hedges DJ, Cordaux R, Xing J, Witherspoon DJ, Rogers AR, Jorde LB, Batzer MA.

PLoS Comput Biol. 2005 Sep;1(4):e44. Epub 2005 Sep 30.


Genomics refutes an exclusively African origin of humans.

Eswaran V, Harpending H, Rogers AR.

J Hum Evol. 2005 Jul;49(1):1-18.


Genetic analysis of lice supports direct contact between modern and archaic humans.

Reed DL, Smith VS, Hammond SL, Rogers AR, Clayton DH.

PLoS Biol. 2004 Nov;2(11):e340. Epub 2004 Oct 5.


Economics and the evolution of life histories.

Rogers AR.

Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9114-5. Epub 2003 Jul 28. No abstract available.


Genetic variation among world populations: inferences from 100 Alu insertion polymorphisms.

Watkins WS, Rogers AR, Ostler CT, Wooding S, Bamshad MJ, Brassington AM, Carroll ML, Nguyen SV, Walker JA, Prasad BV, Reddy PG, Das PK, Batzer MA, Jorde LB.

Genome Res. 2003 Jul;13(7):1607-18. Epub 2003 Jun 12.


Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms.

Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB.

Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.


Order emerging from chaos in human evolutionary genetics.

Rogers AR.

Proc Natl Acad Sci U S A. 2001 Jan 30;98(3):779-80. Review. No abstract available.


Using mitochondrial and nuclear DNA markers to reconstruct human evolution.

Jorde LB, Bamshad M, Rogers AR.

Bioessays. 1998 Feb;20(2):126-36. Review.


Genetic traces of ancient demography.

Harpending HC, Batzer MA, Gurven M, Jorde LB, Rogers AR, Sherry ST.

Proc Natl Acad Sci U S A. 1998 Feb 17;95(4):1961-7.


Microsatellite diversity and the demographic history of modern humans.

Jorde LB, Rogers AR, Bamshad M, Watkins WS, Krakowiak P, Sung S, Kere J, Harpending HC.

Proc Natl Acad Sci U S A. 1997 Apr 1;94(7):3100-3.


Evolution and human choice over time.

Rogers AR.

Ciba Found Symp. 1997;208:231-49; discussion 249-52. Review.


Mitochondrial mismatch analysis is insensitive to the mutational process.

Rogers AR, Fraley AE, Bamshad MJ, Watkins WS, Jorde LB.

Mol Biol Evol. 1996 Sep;13(7):895-902.


Listeriolysin O production and pathogenicity of non-growing Listeria monocytogenes stored at refrigeration temperature.

Buncic S, Avery SM, Rogers AR.

Int J Food Microbiol. 1996 Aug;31(1-3):133-47.


Estimating sexual dimorphism by method-of-moments.

Josephson SC, Juell KE, Rogers AR.

Am J Phys Anthropol. 1996 Jun;100(2):191-206.


Genetic admixture in the late pleistocene.

Manderscheid EJ, Rogers AR.

Am J Phys Anthropol. 1996 May;100(1):1-5.


Ascertainment bias in estimates of average heterozygosity.

Rogers AR, Jorde LB.

Am J Hum Genet. 1996 May;58(5):1033-41.


Origins and affinities of modern humans: a comparison of mitochondrial and nuclear genetic data.

Jorde LB, Bamshad MJ, Watkins WS, Zenger R, Fraley AE, Krakowiak PA, Carpenter KD, Soodyall H, Jenkins T, Rogers AR.

Am J Hum Genet. 1995 Sep;57(3):523-38.

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