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Interoperable and scalable data analysis with microservices: Applications in Metabolomics.

Emami Khoonsari P, Moreno P, Bergmann S, Burman J, Capuccini M, Carone M, Cascante M, de Atauri P, Foguet C, Gonzalez-Beltran A, Hankemeier T, Haug K, He S, Herman S, Johnson D, Kale N, Larsson A, Neumann S, Peters K, Pireddu L, Rocca-Serra P, Roger P, Rueedi R, Ruttkies C, Sadawi N, Salek RM, Sansone SA, Schober D, Selivanov V, Thévenot EA, van Vliet M, Zanetti G, Steinbeck C, Kultima K, Spjuth O.

Bioinformatics. 2019 Mar 9. pii: btz160. doi: 10.1093/bioinformatics/btz160. [Epub ahead of print]


Streamlined guidelines for antibiotic therapies are required for greater efficacy.

Roger PM, Michélangeli C, Girard D, Etienne P, Borredon G, Dautezac V, Keita-Perse O, Del Giudice P.

Med Mal Infect. 2019 Feb 27. pii: S0399-077X(18)30899-0. doi: 10.1016/j.medmal.2019.02.001. [Epub ahead of print] No abstract available.


Immunotherapy of triple-negative breast cancer with cathepsin D-targeting antibodies.

Ashraf Y, Mansouri H, Laurent-Matha V, Alcaraz LB, Roger P, Guiu S, Derocq D, Robin G, Michaud HA, Delpech H, Jarlier M, Pugnière M, Robert B, Puel A, Martin L, Landomiel F, Bourquard T, Achour O, Fruitier-Arnaudin I, Pichard A, Deshayes E, Turtoi A, Poupon A, Simony-Lafontaine J, Boissière-Michot F, Pirot N, Bernex F, Jacot W, du Manoir S, Theillet C, Pouget JP, Navarro-Teulon I, Bonnefoy N, Pèlegrin A, Chardès T, Martineau P, Liaudet-Coopman E.

J Immunother Cancer. 2019 Feb 4;7(1):29. doi: 10.1186/s40425-019-0498-z.


Amoxicillin/clavulanic acid+aminoglycoside as empirical antibiotic treatment in severe community-acquired infections with diagnostic uncertainty.

Courjon J, Chirio D, Demonchy E, Michelangeli C, Degand N, Roger PM.

Eur J Clin Microbiol Infect Dis. 2019 Feb 1. doi: 10.1007/s10096-019-03496-0. [Epub ahead of print]


Adherence to antibiotic guidelines for erysipelas or cellulitis is associated with a favorable outcome.

Klotz C, Courjon J, Michelangeli C, Demonchy E, Ruimy R, Roger PM.

Eur J Clin Microbiol Infect Dis. 2019 Jan 26. doi: 10.1007/s10096-019-03490-6. [Epub ahead of print]


Trends in the risk of myocardial infarction among HIV-1-infected individuals relative to the general population in France: Impact of gender and immune status.

Baldé A, Lang S, Wagner A, Ferrières J, Montaye M, Tattevin P, Cotte L, Aslangul E, Bidégain F, Chéret A, Mary-Krause M, Meynard JL, Molina JM, Partisani M, Roger PM, Boccara F, Costagliola D.

PLoS One. 2019 Jan 16;14(1):e0210253. doi: 10.1371/journal.pone.0210253. eCollection 2019.


The synthesis and characterization of giant Calixarenes.

Guérineau V, Rollet M, Viel S, Lepoittevin B, Costa L, Saint-Aguet P, Laurent R, Roger P, Gigmes D, Martini C, Huc V.

Nat Commun. 2019 Jan 10;10(1):113. doi: 10.1038/s41467-018-07751-4.


PhenoMeNal: processing and analysis of metabolomics data in the cloud.

Peters K, Bradbury J, Bergmann S, Capuccini M, Cascante M, de Atauri P, Ebbels TMD, Foguet C, Glen R, Gonzalez-Beltran A, Günther UL, Handakas E, Hankemeier T, Haug K, Herman S, Holub P, Izzo M, Jacob D, Johnson D, Jourdan F, Kale N, Karaman I, Khalili B, Emami Khonsari P, Kultima K, Lampa S, Larsson A, Ludwig C, Moreno P, Neumann S, Novella JA, O'Donovan C, Pearce JTM, Peluso A, Piras ME, Pireddu L, Reed MAC, Rocca-Serra P, Roger P, Rosato A, Rueedi R, Ruttkies C, Sadawi N, Salek RM, Sansone SA, Selivanov V, Spjuth O, Schober D, Thévenot EA, Tomasoni M, van Rijswijk M, van Vliet M, Viant MR, Weber RJM, Zanetti G, Steinbeck C.

Gigascience. 2019 Feb 1;8(2). pii: giy149. doi: 10.1093/gigascience/giy149.


Hydrophobization of chitosan films by surface grafting with fluorinated polymer brushes.

Lepoittevin B, Elzein T, Dragoe D, Bejjani A, Lemée F, Levillain J, Bazin P, Roger P, Dez I.

Carbohydr Polym. 2019 Feb 1;205:437-446. doi: 10.1016/j.carbpol.2018.10.044. Epub 2018 Oct 18.


Risk factors for unnecessary antibiotic therapy: a major role for clinical management.

Roger PM, Montera E, Lesselingue D, Troadec N, Charlot P, Simand A, Rancezot A, Pantaloni O, Guichard T, Dautezac V, Landais C, Assi F, Levent T; collaborators.

Clin Infect Dis. 2018 Oct 31. doi: 10.1093/cid/ciy921. [Epub ahead of print]


Factors associated with unfavorable outcome in a multicenter audit of 100 infective endocarditis.

Chirio D, Le Marechal M, Moceri P, de la Chapelle A, Chaillou-Optiz S, Mothes A, Foucault C, Maulin L, Parsaï C, Roger PM, Demonchy E.

Eur J Clin Microbiol Infect Dis. 2019 Jan;38(1):109-115. doi: 10.1007/s10096-018-3401-9. Epub 2018 Oct 15.


Fatal Fusobacterium necrophorum infection with gynecological Lemierre's syndrome.

Reymond B, Huette P, Roger PA, Tredez E, Gagneur O, Sanguin S, Guihéneuf R, Dupont H, Mahjoub Y, Abou Arab O.

Med Mal Infect. 2019 Feb;49(1):72-74. doi: 10.1016/j.medmal.2018.09.006. Epub 2018 Oct 9. No abstract available.


Is BVA stifling free-reigning ethical debate?

Roger P, Fishwick J.

Vet Rec. 2018 Jul 21;183(3):102-103. doi: 10.1136/vr.k3179.


Improved quality of care for patients infected or colonised with ESBL-producing Enterobacteriaceae in a French teaching hospital: impact of an interventional prospective study and development of specific tools.

Mondain V, Lieutier F, Pulcini C, Degand N, Landraud L, Ruimy R, Fosse T, Roger PM.

Eur J Clin Microbiol Infect Dis. 2018 May;37(5):977-981. doi: 10.1007/s10096-018-3234-6. Epub 2018 Mar 28.


Cefoxitin-based antibiotic therapy for extended-spectrum β-lactamase-producing Enterobacteriaceae prostatitis: a prospective pilot study.

Demonchy E, Courjon J, Ughetto E, Durand M, Risso K, Garraffo R, Roger PM.

Int J Antimicrob Agents. 2018 Jun;51(6):836-841. doi: 10.1016/j.ijantimicag.2018.01.008. Epub 2018 May 9.


The UK's legal position on Animal Sentience.

Roger P.

Equine Vet J. 2018 Mar;50(2):277. doi: 10.1111/evj.12800. Epub 2018 Jan 12. No abstract available.


New perspectives on understanding cultural diversity in nurse–patient communication.

Crawford T, Candlin S, Roger P.

Collegian. 2017;24(1):63-9.


Bacteraemia in emergency departments: effective antibiotic reassessment is associated with a better outcome.

Aillet C, Jammes D, Fribourg A, Léotard S, Pellat O, Etienne P, Néri D, Lameche D, Pantaloni O, Tournoud S, Roger PM.

Eur J Clin Microbiol Infect Dis. 2018 Feb;37(2):325-331. doi: 10.1007/s10096-017-3136-z. Epub 2017 Nov 21.


Commentary: Thyrotropin Stimulates Differentiation Not Proliferation of Normal Human Thyrocytes in Culture.

Kyrilli A, Paternot S, Miot F, Corvilain B, Vassart G, Roger PP, Dumont JE.

Front Endocrinol (Lausanne). 2017 Aug 25;8:214. doi: 10.3389/fendo.2017.00214. eCollection 2017. No abstract available.


Efficacy and safety of clindamycin-based treatment for bone and joint infections: a cohort study.

Courjon J, Demonchy E, Cua E, Bernard E, Roger PM.

Eur J Clin Microbiol Infect Dis. 2017 Dec;36(12):2513-2518. doi: 10.1007/s10096-017-3094-5. Epub 2017 Sep 7.


Methanobrevibacter oralis detected along with Aggregatibacter actinomycetemcomitans in a series of community-acquired brain abscesses.

Nkamga VD, Lotte R, Chirio D, Lonjon M, Roger PM, Drancourt M, Ruimy R.

Clin Microbiol Infect. 2018 Feb;24(2):207-208. doi: 10.1016/j.cmi.2017.08.021. Epub 2017 Sep 4. No abstract available.


Fast track consultation in the infectious diseases department of a French university hospital: evaluation of the service delivered to the general practitioner.

Weiss N, Courjon J, Pradier C, Caisso C, Mondain V, Roger PM, Demonchy E.

Infect Dis (Lond). 2018 Feb;50(2):119-124. doi: 10.1080/23744235.2017.1366043. Epub 2017 Aug 22.


CDK4 phosphorylation status and a linked gene expression profile predict sensitivity to palbociclib.

Raspé E, Coulonval K, Pita JM, Paternot S, Rothé F, Twyffels L, Brohée S, Craciun L, Larsimont D, Kruys V, Sandras F, Salmon I, Van Laere S, Piccart M, Ignatiadis M, Sotiriou C, Roger PP.

EMBO Mol Med. 2017 Aug;9(8):1052-1066. doi: 10.15252/emmm.201607084.


Patients with community-acquired bacteremia of unknown origin: clinical characteristics and usefulness of microbiological results for therapeutic issues: a single-center cohort study.

Courjon J, Demonchy E, Degand N, Risso K, Ruimy R, Roger PM.

Ann Clin Microbiol Antimicrob. 2017 May 19;16(1):40. doi: 10.1186/s12941-017-0214-0.


Medical table: A major tool for antimicrobial stewardship policy.

Roger PM, Demonchy E, Risso K, Courjon J, Leroux S, Leroux E, Cua É.

Med Mal Infect. 2017 Sep;47(5):311-318. doi: 10.1016/j.medmal.2017.03.005. Epub 2017 Apr 28. Review.


Staphylococcus lugdunensis: a neglected pathogen of infections involving fracture-fixation devices.

Seng P, Traore M, Lavigne JP, Maulin L, Lagier JC, Thiery JF, Levy PY, Roger PM, Bonnet E, Sotto A, Stein A.

Int Orthop. 2017 Jun;41(6):1085-1091. doi: 10.1007/s00264-017-3476-4. Epub 2017 Apr 12. Review.


Surface initiated supplemental activator and reducing agent atom transfer radical polymerization (SI-SARA-ATRP) of 4-vinylpyridine on poly(ethylene terephthalate).

Maaz M, Elzein T, Bejjani A, Barroca-Aubry N, Lepoittevin B, Dragoe D, Mazerat S, Nsouli B, Roger P.

J Colloid Interface Sci. 2017 Aug 15;500:69-78. doi: 10.1016/j.jcis.2017.03.115. Epub 2017 Apr 2.


JNKs function as CDK4-activating kinases by phosphorylating CDK4 and p21.

Colleoni B, Paternot S, Pita JM, Bisteau X, Coulonval K, Davis RJ, Raspé E, Roger PP.

Oncogene. 2017 Jul 27;36(30):4349-4361. doi: 10.1038/onc.2017.7. Epub 2017 Apr 3.


Herpes virus infections in immunocompetent patient – Varicella, zoster

Courjon J, Demonchy E, Roger PM.

Rev Prat. 2017 Apr;67(4):e183-e188. French. No abstract available.


Herpes virus infections in immunocompetent patient – Herpes

Courjon J, Demonchy E, Roger PM.

Rev Prat. 2017 Apr;67(4):e177-e181. French. No abstract available.


Molecular subtypes of metastatic colorectal cancer are associated with patient response to irinotecan-based therapies.

Del Rio M, Mollevi C, Bibeau F, Vie N, Selves J, Emile JF, Roger P, Gongora C, Robert J, Tubiana-Mathieu N, Ychou M, Martineau P.

Eur J Cancer. 2017 May;76:68-75. doi: 10.1016/j.ejca.2017.02.003. Epub 2017 Mar 8.


[Is it possible to shorten the antibiotic therapy in patients hospitalized for acute COPD exacerbation?]

Vandenbos F, Caisso C, Harb E, Vidal R, Nicolle I, Risso K, Roger PM; au nom du Réso-Infectio-PACA-Est.

Rev Mal Respir. 2017 Mar;34(3):275-277. doi: 10.1016/j.rmr.2017.01.004. Epub 2017 Feb 8. French. No abstract available.


COPD in HIV-Infected Patients: CD4 Cell Count Highly Correlated.

Risso K, Guillouet-de-Salvador F, Valerio L, Puglièse P, Naqvi A, Durant J, Demonchy E, Perbost I, Cua E, Marquette CH, Roger PM.

PLoS One. 2017 Jan 5;12(1):e0169359. doi: 10.1371/journal.pone.0169359. eCollection 2017.


Switch to Ritonavir-Boosted versus Unboosted Atazanavir plus Raltegravir Dual-Drug Therapy Leads to Similar Efficacy and Safety Outcomes in Clinical Practice.

Gantner P, Bani-Sadr F, Garraffo R, Roger PM, Treger M, Jovelin T, Pugliese P, Rey D; Dat’AIDS cohort.

PLoS One. 2016 Oct 31;11(10):e0164240. doi: 10.1371/journal.pone.0164240. eCollection 2016.


Methanobrevibacter smithii and Bacteroides thetaiotaomicron cultivated from a chronic paravertebral muscle abscess.

Nkamga VD, Lotte R, Roger PM, Drancourt M, Ruimy R.

Clin Microbiol Infect. 2016 Dec;22(12):1008-1009. doi: 10.1016/j.cmi.2016.09.007. Epub 2016 Sep 21. No abstract available.


The interactional consequences of 'empowering discourse' in intercultural patient education.

Crawford T, Roger P, Candlin S.

Patient Educ Couns. 2017 Mar;100(3):495-500. doi: 10.1016/j.pec.2016.09.017. Epub 2016 Sep 22. Review.


Community-acquired pneumonia and positive urinary antigen tests: Factors associated with targeted antibiotic therapy.

Mothes A, Léotard S, Nicolle I, Smets A, Chirio D, Rotomondo C, Tiger F, Del Giudice P, Perrin C, Néri D, Foucault C, Della Guardia M, Hyvernat H, Roger PM; Réseau Infectio-PACA-Est.

Med Mal Infect. 2016 Oct;46(7):365-371. doi: 10.1016/j.medmal.2016.05.009. Epub 2016 Jul 1.


Bacteraemic urinary tract infections may mimic respiratory infections: a nested case-control study.

Denis E, Martis N, Guillouet-de Salvador F, Demonchy E, Degand N, Carles K, Roger PM.

Eur J Clin Microbiol Infect Dis. 2016 Oct;35(10):1601-5. doi: 10.1007/s10096-016-2697-6. Epub 2016 Jun 8.


[Antimicrobial stewardship policy: Improve the quality of medical practices and not subject the infectious diseases specialists].

Roger PM, Leroy J, Garrait V, Guery B.

Med Mal Infect. 2016 May;46(3):115-6. doi: 10.1016/j.medmal.2016.03.002. Epub 2016 Apr 7. French. No abstract available.


Mechanical Behavior of a Bacillus subtilis Pellicle.

Hollenbeck EC, Douarche C, Allain JM, Roger P, Regeard C, Cegelski L, Fuller GG, Raspaud E.

J Phys Chem B. 2016 Jul 7;120(26):6080-8. doi: 10.1021/acs.jpcb.6b02074. Epub 2016 Apr 15.


Long-term efficacy and safety of etravirine-containing regimens in a real-life cohort of treatment-experienced HIV-1-infected patients.

Allavena C, Katlama C, Cotte L, Roger PM, Delobel P, Cheret A, Duvivier C, Poizot-Martin I, Hoen B, Cabie A, Cheret A, Lahoulou R, Raffi F, Pugliese P; Dat’AIDS Study group.

Infect Dis (Lond). 2016;48(5):392-8. doi: 10.3109/23744235.2015.1133927. Epub 2016 Jan 13.


Antiretroviral Regimens and CD4/CD8 Ratio Normalization in HIV-Infected Patients during the Initial Year of Treatment: A Cohort Study.

De Salvador-Guillouët F, Sakarovitch C, Durant J, Risso K, Demonchy E, Roger PM, Fontas E.

PLoS One. 2015 Oct 20;10(10):e0140519. doi: 10.1371/journal.pone.0140519. eCollection 2015.


Severe community-acquired pneumonia and positive urinary antigen test for S. pneumoniae: amoxicillin is associated with a favourable outcome.

Blanc V, Mothes A, Smetz A, Timontin I, Guardia MD, Billiemaz A, Dellamonica J, Vassallo M, Néri D, Chadapaud S, Toyer AL, Del Guidice P, Fribourg A, Léotard S, Nicolle I, Roger PM.

Eur J Clin Microbiol Infect Dis. 2015 Dec;34(12):2455-61. doi: 10.1007/s10096-015-2503-x. Epub 2015 Oct 17.


Antifibrotic, Antioxidant, and Immunomodulatory Effects of Mesenchymal Stem Cells in HOCl-Induced Systemic Sclerosis.

Maria AT, Toupet K, Bony C, Pirot N, Vozenin MC, Petit B, Roger P, Batteux F, Le Quellec A, Jorgensen C, Noël D, Guilpain P.

Arthritis Rheumatol. 2016 Apr;68(4):1013-25. doi: 10.1002/art.39477.


Antimicrobial stewardship policy: time to revisit the strategy?

Roger PM, Courjon J, Léotard S, Déchamp C, Négrin N, Vassallo M; Network for Infectious Diseases Paca-Est.

Eur J Clin Microbiol Infect Dis. 2015 Nov;34(11):2167-70. doi: 10.1007/s10096-015-2483-x. Epub 2015 Sep 19. Review.


Virological response and resistance mutations to NS3/4A inhibitors in hepatitis C virus-human immunodeficiency virus coinfection.

Naqvi A, Giordanengo V, Dunais B, de Salvador-Guillouet F, Perbost I, Durant J, Pugliese P, Joulié A, Roger PM, Rosenthal E.

World J Hepatol. 2015 Aug 28;7(18):2177-83. doi: 10.4254/wjh.v7.i18.2177.


Is Impact of Statin Therapy on All-Cause Mortality Different in HIV-Infected Individuals Compared to General Population? Results from the FHDH-ANRS CO4 Cohort.

Lang S, Lacombe JM, Mary-Krause M, Partisani M, Bidegain F, Cotte L, Aslangul E, Chéret A, Boccara F, Meynard JL, Pradier C, Roger PM, Tattevin P, Costagliola D, Molina JM; French Hospital Database on HIV.

PLoS One. 2015 Jul 22;10(7):e0133358. doi: 10.1371/journal.pone.0133358. eCollection 2015.


Nuclear cathepsin D enhances TRPS1 transcriptional repressor function to regulate cell cycle progression and transformation in human breast cancer cells.

Bach AS, Derocq D, Laurent-Matha V, Montcourrier P, Sebti S, Orsetti B, Theillet C, Gongora C, Pattingre S, Ibing E, Roger P, Linares LK, Reinheckel T, Meurice G, Kaiser FJ, Gespach C, Liaudet-Coopman E.

Oncotarget. 2015 Sep 29;6(29):28084-103. doi: 10.18632/oncotarget.4394.


Prosthetic joint infection: A pluridisciplinary multi-center audit bridging quality of care and outcome.

Roger PM, Tabutin J, Blanc V, Léotard S, Brofferio P, Léculé F, Redréau B, Bernard E; Réso-Infectio-Paca-Est.

Med Mal Infect. 2015 Jun;45(6):229-36. doi: 10.1016/j.medmal.2015.04.003. Epub 2015 May 27.


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