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Items: 1 to 50 of 377

1.

Exoproteome profiling of Trypanosoma cruzi during amastigogenesis early stages.

Mandacaru SC, Queiroz RML, Alborghetti MR, de Oliveira LS, de Lima CMR, Bastos IMD, Santana JM, Roepstorff P, Ricart CAO, Charneau S.

PLoS One. 2019 Nov 22;14(11):e0225386. doi: 10.1371/journal.pone.0225386. eCollection 2019.

2.

Absolute Quantitation of Proteins by Acid Hydrolysis Combined with Amino Acid Detection by Mass Spectrometry.

Mirgorodskaya OA, Körner R, Kozmin YP, Roepstorff P.

Methods Mol Biol. 2019;2030:11-16. doi: 10.1007/978-1-4939-9639-1_2.

PMID:
31347106
3.

Corrigendum to "Biochemical and structural characterization of a protein complex containing a hyaluronidase and a CRISP-like protein isolated from the venom of the spider Acanthoscurria natalensis" [J. Proteome 192. (2019) 102-113].

Barth T, Mandacaru SC, Charneau S, de Sousa MV, Ricart CAO, Noronha EF, Souza AA, de Freitas SM, Roepstorff P, Fontes W, Castro MS, Júnior ORP.

J Proteomics. 2019 Apr 15;197:115. doi: 10.1016/j.jprot.2019.01.002. Epub 2019 Feb 15. No abstract available.

PMID:
30777676
4.

TMT-Based Quantitative Proteomics Analysis Reveals Airborne PM2.5-Induced Pulmonary Fibrosis.

Liu S, Zhang W, Zhang F, Roepstorff P, Yang F, Lu Z, Ding W.

Int J Environ Res Public Health. 2018 Dec 31;16(1). pii: E98. doi: 10.3390/ijerph16010098.

5.

Analysis of the Effect of Intestinal Ischemia and Reperfusion on the Rat Neutrophils Proteome.

Tahir M, Arshid S, Fontes B, Castro MS, Luz IS, Botelho KLR, Sidoli S, Schwämmle V, Roepstorff P, Fontes W.

Front Mol Biosci. 2018 Nov 29;5:89. doi: 10.3389/fmolb.2018.00089. eCollection 2018.

6.

Biochemical and structural characterization of a protein complex containing a hyaluronidase and a CRISP-like protein isolated from the venom of the spider Acanthoscurria natalensis.

Barth T, Mandacaru SC, Charneau S, Souza MV, Ricart CAO, Noronha EF, Souza AA, Freitas SM, Roepstorff P, Fontes W, Castro MS, Pires Júnior OR.

J Proteomics. 2019 Feb 10;192:102-113. doi: 10.1016/j.jprot.2018.08.012. Epub 2018 Aug 27. Erratum in: J Proteomics. 2019 Apr 15;197:115.

PMID:
30165259
7.

N-glycan maturation mutants in Lotus japonicus for basic and applied glycoprotein research.

Pedersen CT, Loke I, Lorentzen A, Wolf S, Kamble M, Kristensen SK, Munch D, Radutoiu S, Spillner E, Roepstorff P, Thaysen-Andersen M, Stougaard J, Dam S.

Plant J. 2017 Aug;91(3):394-407. doi: 10.1111/tpj.13570. Epub 2017 May 22.

8.

Specific adjustments in grapevine leaf proteome discriminating resistant and susceptible grapevine genotypes to Plasmopara viticola.

Figueiredo A, Martins J, Sebastiana M, Guerreiro A, Silva A, Matos AR, Monteiro F, Pais MS, Roepstorff P, Coelho AV.

J Proteomics. 2017 Jan 30;152:48-57. doi: 10.1016/j.jprot.2016.10.012. Epub 2016 Oct 27.

PMID:
27989945
9.

Insight into the Exoproteome of the Tissue-Derived Trypomastigote form of Trypanosoma cruzi.

Queiroz RM, Ricart CA, Machado MO, Bastos IM, de Santana JM, de Sousa MV, Roepstorff P, Charneau S.

Front Chem. 2016 Nov 7;4:42. eCollection 2016.

10.

Oak protein profile alterations upon root colonization by an ectomycorrhizal fungus.

Sebastiana M, Martins J, Figueiredo A, Monteiro F, Sardans J, Peñuelas J, Silva A, Roepstorff P, Pais MS, Coelho AV.

Mycorrhiza. 2017 Feb;27(2):109-128. doi: 10.1007/s00572-016-0734-z. Epub 2016 Oct 7.

PMID:
27714470
11.

High performance mass spectrometry based proteomics reveals enzyme and signaling pathway regulation in neutrophils during the early stage of surgical trauma.

Arshid S, Tahir M, Fontes B, de Souza Montero EF, Castro MS, Sidoli S, Roepstorff P, Fontes W.

Proteomics Clin Appl. 2017 Jan;11(1-2). doi: 10.1002/prca.201600001. Epub 2016 Nov 9.

PMID:
27672009
12.

Site-specific glycosylation of donkey milk lactoferrin investigated by high-resolution mass spectrometry.

Gallina S, Saletti R, Cunsolo V, Muccilli V, Foti S, Roepstorff P, Rasmussen MI.

Amino Acids. 2016 Dec;48(12):2799-2808. Epub 2016 Aug 22.

PMID:
27550041
13.

Neutrophil proteomic analysis reveals the participation of antioxidant enzymes, motility and ribosomal proteins in the prevention of ischemic effects by preconditioning.

Arshid S, Tahir M, Fontes B, Montero EF, Castro MS, Sidoli S, Schwämmle V, Roepstorff P, Fontes W.

J Proteomics. 2017 Jan 16;151:162-173. doi: 10.1016/j.jprot.2016.05.016. Epub 2016 May 18.

PMID:
27208787
14.

Sequence characterization and glycosylation sites identification of donkey milk lactoferrin by multiple enzyme digestions and mass spectrometry.

Gallina S, Cunsolo V, Saletti R, Muccilli V, Di Francesco A, Foti S, Lorenzten AM, Roepstorff P.

Amino Acids. 2016 Jul;48(7):1569-80. doi: 10.1007/s00726-016-2209-0. Epub 2016 Mar 28.

PMID:
27020775
15.

Revealing the functional structure of a new PLA2 K49 from Bothriopsis taeniata snake venom employing automatic "de novo" sequencing using CID/HCD/ETD MS/MS analyses.

Carregari VC, Dai J, Verano-Braga T, Rocha T, Ponce-Soto LA, Marangoni S, Roepstorff P.

J Proteomics. 2016 Jan 10;131:131-139. doi: 10.1016/j.jprot.2015.10.020. Epub 2015 Oct 22.

PMID:
26481240
16.

Measuring site occupancy: a new perspective on cysteine oxidation.

Rogowska-Wrzesinska A, Wojdyla K, Williamson J, Roepstorff P.

Free Radic Biol Med. 2014 Oct;75 Suppl 1:S46-7. doi: 10.1016/j.freeradbiomed.2014.10.808. Epub 2014 Dec 10.

PMID:
26461387
17.

Computational and statistical methods for high-throughput analysis of post-translational modifications of proteins.

Schwämmle V, Verano-Braga T, Roepstorff P.

J Proteomics. 2015 Nov 3;129:3-15. doi: 10.1016/j.jprot.2015.07.016. Epub 2015 Jul 26. Review.

PMID:
26216596
18.

The SNO/SOH TMT strategy for combinatorial analysis of reversible cysteine oxidations.

Wojdyla K, Williamson J, Roepstorff P, Rogowska-Wrzesinska A.

J Proteomics. 2015 Jan 15;113:415-34. doi: 10.1016/j.jprot.2014.10.015. Epub 2014 Oct 29.

PMID:
25449835
19.

Franz Hillenkamp (1936-2014).

Roepstorff P.

Angew Chem Int Ed Engl. 2014 Nov 17;53(47):12673. doi: 10.1002/anie.201409504. Epub 2014 Oct 21. No abstract available.

PMID:
25331412
20.

Quantitative proteomic and phosphoproteomic analysis of Trypanosoma cruzi amastigogenesis.

Queiroz RM, Charneau S, Mandacaru SC, Schwämmle V, Lima BD, Roepstorff P, Ricart CA.

Mol Cell Proteomics. 2014 Dec;13(12):3457-72. doi: 10.1074/mcp.M114.040329. Epub 2014 Sep 15.

21.

Cell surface proteome analysis of human-hosted Trypanosoma cruzi life stages.

Queiroz RM, Charneau S, Bastos IM, Santana JM, Sousa MV, Roepstorff P, Ricart CA.

J Proteome Res. 2014 Aug 1;13(8):3530-41. doi: 10.1021/pr401120y. Epub 2014 Jul 14.

PMID:
24978697
22.

Leucoagaricus gongylophorus uses leaf-cutting ants to vector proteolytic enzymes towards new plant substrate.

Kooij PW, Rogowska-Wrzesinska A, Hoffmann D, Roepstorff P, Boomsma JJ, Schiøtt M.

ISME J. 2014 May;8(5):1032-40. doi: 10.1038/ismej.2013.231. Epub 2014 Jan 9.

23.

Proteome reference maps of the Lotus japonicus nodule and root.

Dam S, Dyrlund TF, Ussatjuk A, Jochimsen B, Nielsen K, Goffard N, Ventosa M, Lorentzen A, Gupta V, Andersen SU, Enghild JJ, Ronson CW, Roepstorff P, Stougaard J.

Proteomics. 2014 Feb;14(2-3):230-40. doi: 10.1002/pmic.201300353. Epub 2014 Jan 6.

PMID:
24293220
24.

Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis.

Hackenberg T, Juul T, Auzina A, Gwizdz S, Malolepszy A, Van Der Kelen K, Dam S, Bressendorff S, Lorentzen A, Roepstorff P, Lehmann Nielsen K, Jørgensen JE, Hofius D, Van Breusegem F, Petersen M, Andersen SU.

Plant Cell. 2013 Nov;25(11):4616-26. doi: 10.1105/tpc.113.117192. Epub 2013 Nov 27.

25.

Isotope labeling-based quantitative proteomics of developing seeds of castor oil seed (Ricinus communis L.).

Nogueira FC, Palmisano G, Schwämmle V, Soares EL, Soares AA, Roepstorff P, Domont GB, Campos FA.

J Proteome Res. 2013 Nov 1;12(11):5012-24. doi: 10.1021/pr400685z. Epub 2013 Oct 10.

PMID:
24090105
26.

Combined N-glycome and N-glycoproteome analysis of the Lotus japonicus seed globulin fraction shows conservation of protein structure and glycosylation in legumes.

Dam S, Thaysen-Andersen M, Stenkjær E, Lorentzen A, Roepstorff P, Packer NH, Stougaard J.

J Proteome Res. 2013 Jul 5;12(7):3383-92. doi: 10.1021/pr400224s. Epub 2013 Jun 25.

PMID:
23799247
27.

Moving pieces in a venomic puzzle: unveiling post-translationally modified toxins from Tityus serrulatus.

Verano-Braga T, Dutra AA, León IR, Melo-Braga MN, Roepstorff P, Pimenta AM, Kjeldsen F.

J Proteome Res. 2013 Jul 5;12(7):3460-70. doi: 10.1021/pr4003068. Epub 2013 Jun 13.

PMID:
23731212
28.

The proteomic profile of Stichodactyla duerdeni secretion reveals the presence of a novel O-linked glycopeptide.

Cassoli JS, Verano-Braga T, Oliveira JS, Montandon GG, Cologna CT, Peigneur S, Pimenta AM, Kjeldsen F, Roepstorff P, Tytgat J, de Lima ME.

J Proteomics. 2013 Jul 11;87:89-102. doi: 10.1016/j.jprot.2013.05.022. Epub 2013 May 29.

PMID:
23727489
29.

Identification of dynamic changes in proteins associated with the cellular cytoskeleton after exposure to okadaic acid.

Opsahl JA, Ljostveit S, Solstad T, Risa K, Roepstorff P, Fladmark KE.

Mar Drugs. 2013 May 24;11(6):1763-82. doi: 10.3390/md11061763.

30.

Comprehensive proteomic analysis of Trypanosoma cruzi epimastigote cell surface proteins by two complementary methods.

Queiroz RM, Charneau S, Motta FN, Santana JM, Roepstorff P, Ricart CA.

J Proteome Res. 2013 Jul 5;12(7):3255-63. doi: 10.1021/pr400110h. Epub 2013 Jun 6.

PMID:
23682730
31.

μ-Theraphotoxin-An1a: primary structure determination and assessment of the pharmacological activity of a promiscuous anti-insect toxin from the venom of the tarantula Acanthoscurria natalensis (Mygalomorphae, Theraphosidae).

Rates B, Prates MV, Verano-Braga T, da Rocha AP, Roepstorff P, Borges CL, Lapied B, Murillo L, Pimenta AM, Biondi I, De Lima ME.

Toxicon. 2013 Aug;70:123-34. doi: 10.1016/j.toxicon.2013.04.013. Epub 2013 May 4.

32.

2D gels still have a niche in proteomics.

Rogowska-Wrzesinska A, Le Bihan MC, Thaysen-Andersen M, Roepstorff P.

J Proteomics. 2013 Aug 2;88:4-13. doi: 10.1016/j.jprot.2013.01.010. Epub 2013 Jan 24. Review.

PMID:
23353020
33.

Laccase detoxification mediates the nutritional alliance between leaf-cutting ants and fungus-garden symbionts.

De Fine Licht HH, Schiøtt M, Rogowska-Wrzesinska A, Nygaard S, Roepstorff P, Boomsma JJ.

Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):583-7. doi: 10.1073/pnas.1212709110. Epub 2012 Dec 24.

34.

Hydrogen/deuterium exchange mass spectrometry reveals specific changes in the local flexibility of plasminogen activator inhibitor 1 upon binding to the somatomedin B domain of vitronectin.

Trelle MB, Hirschberg D, Jansson A, Ploug M, Roepstorff P, Andreasen PA, Jørgensen TJ.

Biochemistry. 2012 Oct 16;51(41):8256-66. doi: 10.1021/bi3008998. Epub 2012 Oct 4.

PMID:
22957734
35.

Mass spectrometry based proteomics, background, status and future needs.

Roepstorff P.

Protein Cell. 2012 Sep;3(9):641-7. doi: 10.1007/s13238-012-2079-5. Epub 2012 Aug 29. Review.

36.

An on-target desalting and concentration sample preparation protocol for MALDI-MS and MS/MS analysis.

Zhang X, Wang Q, Lou X, Sun H, Roepstorff P, Liu S.

Methods Mol Biol. 2012;909:17-28. doi: 10.1007/978-1-61779-959-4_2.

PMID:
22903706
37.

Legume receptors perceive the rhizobial lipochitin oligosaccharide signal molecules by direct binding.

Broghammer A, Krusell L, Blaise M, Sauer J, Sullivan JT, Maolanon N, Vinther M, Lorentzen A, Madsen EB, Jensen KJ, Roepstorff P, Thirup S, Ronson CW, Thygesen MB, Stougaard J.

Proc Natl Acad Sci U S A. 2012 Aug 21;109(34):13859-64. doi: 10.1073/pnas.1205171109. Epub 2012 Aug 2.

38.

Global proteome changes in larvae of Callosobruchus maculatus Coleoptera:Chrysomelidae:Bruchinae) following ingestion of a cysteine proteinase inhibitor.

Nogueira FC, Silva CP, Alexandre D, Samuels RI, Soares EL, Aragão FJ, Palmisano G, Domont GB, Roepstorff P, Campos FA.

Proteomics. 2012 Aug;12(17):2704-15. doi: 10.1002/pmic.201200039. Epub 2012 Jul 26.

PMID:
22833537
39.

The interaction of the antitoxin DM43 with a snake venom metalloproteinase analyzed by mass spectrometry and surface plasmon resonance.

Brand GD, Salbo R, Jørgensen TJ, Bloch C Jr, Boeri Erba E, Robinson CV, Tanjoni I, Moura-da-Silva AM, Roepstorff P, Domont GB, Perales J, Valente RH, Neves-Ferreira AG.

J Mass Spectrom. 2012 May;47(5):567-73. doi: 10.1002/jms.2990.

PMID:
22549991
40.

Comparison of the neutrophil proteome in trauma patients and normal controls.

Teles LM, Aquino EN, Neves AC, Garcia CH, Roepstorff P, Fontes B, Castro MS, Fontes W.

Protein Pept Lett. 2012 Jun 1;19(6):663-72.

41.

Time-resolved quantitative phosphoproteomics: new insights into Angiotensin-(1-7) signaling networks in human endothelial cells.

Verano-Braga T, Schwämmle V, Sylvester M, Passos-Silva DG, Peluso AA, Etelvino GM, Santos RA, Roepstorff P.

J Proteome Res. 2012 Jun 1;11(6):3370-81. doi: 10.1021/pr3001755. Epub 2012 Apr 26.

PMID:
22497526
42.

Performance of isobaric and isotopic labeling in quantitative plant proteomics.

Nogueira FC, Palmisano G, Schwämmle V, Campos FA, Larsen MR, Domont GB, Roepstorff P.

J Proteome Res. 2012 May 4;11(5):3046-52. doi: 10.1021/pr300192f. Epub 2012 Apr 9.

PMID:
22452248
43.

Proteomic profile of the nucellus of castor bean (Ricinus communis L.) seeds during development.

Nogueira FC, Palmisano G, Soares EL, Shah M, Soares AA, Roepstorff P, Campos FA, Domont GB.

J Proteomics. 2012 Mar 16;75(6):1933-9. doi: 10.1016/j.jprot.2012.01.002. Epub 2012 Jan 14.

PMID:
22266101
44.

Absolute quantitation of proteins by acid hydrolysis combined with amino acid detection by mass spectrometry.

Mirgorodskaya OA, Körner R, Kozmin YP, Roepstorff P.

Methods Mol Biol. 2012;828:115-20. doi: 10.1007/978-1-61779-445-2_11.

PMID:
22125141
45.

Identification of nitrotyrosine containing peptides using combined fractional diagonal chromatography (COFRADIC) and off-line nano-LC-MALDI.

Larsen TR, Bache N, Gramsbergen JB, Roepstorff P.

J Am Soc Mass Spectrom. 2011 Jun;22(6):989-96. doi: 10.1007/s13361-011-0095-y. Epub 2011 Mar 8.

PMID:
21953040
46.

Insulin-like growth factor binding protein-6 delays replicative senescence of human fibroblasts.

Micutkova L, Diener T, Li C, Rogowska-Wrzesinska A, Mueck C, Huetter E, Weinberger B, Grubeck-Loebenstein B, Roepstorff P, Zeng R, Jansen-Duerr P.

Mech Ageing Dev. 2011 Oct;132(10):468-79. doi: 10.1016/j.mad.2011.07.005. Epub 2011 Jul 24.

47.

Oxidative stress-induced proteome alterations target different cellular pathways in human myoblasts.

Baraibar MA, Hyzewicz J, Rogowska-Wrzesinska A, Ladouce R, Roepstorff P, Mouly V, Friguet B.

Free Radic Biol Med. 2011 Oct 15;51(8):1522-32. doi: 10.1016/j.freeradbiomed.2011.06.032. Epub 2011 Jul 5.

PMID:
21810466
48.

Mass spectrometry based approach for identification and characterisation of fluorescent proteins from marine organisms.

Wojdyla K, Rogowska-Wrzesinska A, Wrzesinski K, Roepstorff P.

J Proteomics. 2011 Dec 10;75(1):44-55. doi: 10.1016/j.jprot.2011.05.043. Epub 2011 Jun 15.

PMID:
21703368
49.

Fish proteins as targets of ferrous-catalyzed oxidation: identification of protein carbonyls by fluorescent labeling on two-dimensional gels and MALDI-TOF/TOF mass spectrometry.

Pazos M, da Rocha AP, Roepstorff P, Rogowska-Wrzesinska A.

J Agric Food Chem. 2011 Jul 27;59(14):7962-77. doi: 10.1021/jf201080t. Epub 2011 Jun 27.

PMID:
21630660
50.

Nanodisc-based co-immunoprecipitation for mass spectrometric identification of membrane-interacting proteins.

Borch J, Roepstorff P, Møller-Jensen J.

Mol Cell Proteomics. 2011 Jul;10(7):O110.006775. doi: 10.1074/mcp.O110.006775. Epub 2011 Apr 30.

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