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Items: 29

1.

Classification and characterization of human endogenous retroviruses; mosaic forms are common.

Vargiu L, Rodriguez-Tomé P, Sperber GO, Cadeddu M, Grandi N, Blikstad V, Tramontano E, Blomberg J.

Retrovirology. 2016 Jan 22;13:7. doi: 10.1186/s12977-015-0232-y.

2.

QTREDS: a Ruby on Rails-based platform for omics laboratories.

Palla P, Frau G, Vargiu L, Rodriguez-Tomé P.

BMC Bioinformatics. 2014;15 Suppl 1:S13. doi: 10.1186/1471-2105-15-S1-S13. Epub 2014 Jan 10.

3.

MMsINC: a large-scale chemoinformatics database.

Masciocchi J, Frau G, Fanton M, Sturlese M, Floris M, Pireddu L, Palla P, Cedrati F, Rodriguez-Tomé P, Moro S.

Nucleic Acids Res. 2009 Jan;37(Database issue):D284-90. doi: 10.1093/nar/gkn727. Epub 2008 Oct 17.

4.

In vitro and in silico processes to identify differentially expressed proteins.

Allet N, Barrillat N, Baussant T, Boiteau C, Botti P, Bougueleret L, Budin N, Canet D, Carraud S, Chiappe D, Christmann N, Colinge J, Cusin I, Dafflon N, Depresle B, Fasso I, Frauchiger P, Gaertner H, Gleizes A, Gonzalez-Couto E, Jeandenans C, Karmime A, Kowall T, Lagache S, Mahé E, Masselot A, Mattou H, Moniatte M, Niknejad A, Paolini M, Perret F, Pinaud N, Ranno F, Raimondi S, Reffas S, Regamey PO, Rey PA, Rodriguez-Tomé P, Rose K, Rossellat G, Saudrais C, Schmidt C, Villain M, Zwahlen C.

Proteomics. 2004 Aug;4(8):2333-51.

PMID:
15274127
5.

Industrial-scale proteomics: from liters of plasma to chemically synthesized proteins.

Rose K, Bougueleret L, Baussant T, Böhm G, Botti P, Colinge J, Cusin I, Gaertner H, Gleizes A, Heller M, Jimenez S, Johnson A, Kussmann M, Menin L, Menzel C, Ranno F, Rodriguez-Tomé P, Rogers J, Saudrais C, Villain M, Wetmore D, Bairoch A, Hochstrasser D.

Proteomics. 2004 Jul;4(7):2125-50.

PMID:
15221774
6.

A radiation hybrid map of mouse genes.

Hudson TJ, Church DM, Greenaway S, Nguyen H, Cook A, Steen RG, Van Etten WJ, Castle AB, Strivens MA, Trickett P, Heuston C, Davison C, Southwell A, Hardisty R, Varela-Carver A, Haynes AR, Rodriguez-Tome P, Doi H, Ko MS, Pontius J, Schriml L, Wagner L, Maglott D, Brown SD, Lander ES, Schuler G, Denny P.

Nat Genet. 2001 Oct;29(2):201-5.

PMID:
11586302
7.

A radiation hybrid transcript map of the mouse genome.

Avner P, Bruls T, Poras I, Eley L, Gas S, Ruiz P, Wiles MV, Sousa-Nunes R, Kettleborough R, Rana A, Morissette J, Bentley L, Goldsworthy M, Haynes A, Herbert E, Southam L, Lehrach H, Weissenbach J, Manenti G, Rodriguez-Tome P, Beddington R, Dunwoodie S, Cox RD.

Nat Genet. 2001 Oct;29(2):194-200.

PMID:
11586301
8.

EBI databases and services.

Rodriguez-Tomé P.

Mol Biotechnol. 2001 Jul;18(3):199-212. Review.

PMID:
11503515
9.

Accessing and distributing EMBL data using CORBA (common object request broker architecture).

Wang L, Rodriguez-Tomé P, Redaschi N, McNeil P, Robinson A, Lijnzaad P.

Genome Biol. 2000;1(5):RESEARCH0010. Epub 2000 Nov 6.

10.

GBuilder--an application for the visualization and integration of EST cluster data.

Muilu J, Rodriguez-Tomé P, Robinson A.

Genome Res. 2001 Jan;11(1):179-84.

11.

JESAM: CORBA software components to create and publish EST alignments and clusters.

Parsons JD, Rodriguez-Tomé P.

Bioinformatics. 2000 Apr;16(4):313-25.

PMID:
10869029
12.

RHdb: the Radiation Hybrid database.

Rodriguez-Tomé P, Lijnzaad P.

Nucleic Acids Res. 2001 Jan 1;29(1):165-6.

13.

RHdb: the radiation hybrid database.

Rodriguez-Tomé P, Lijnzaad P.

Nucleic Acids Res. 2000 Jan 1;28(1):146-7.

14.

Resources at EBI.

Rodriguez-Tomé P.

Methods Mol Biol. 2000;132:313-35. No abstract available.

PMID:
10547844
15.
16.

A proposal for a standard CORBA interface for genome maps.

Barillot E, Leser U, Lijnzaad P, Cussat-Blanc C, Jungfer K, Guyon F, Vaysseix G, Helgesen C, Rodriguez-Tomé P.

Bioinformatics. 1999 Feb;15(2):157-69.

PMID:
10089201
17.

Organising multi-dimensional biological image information: the BioImage Database.

Carazo JM, Stelzer EH, Engel A, Fita I, Henn C, Machtynger J, McNeil P, Shotton DM, Chagoyen M, de Alarcón PA, Fritsch R, Heymann JB, Kalko S, Pittet JJ, Rodriguez-Tomé P, Boudier T.

Nucleic Acids Res. 1999 Jan 1;27(1):280-3.

18.

The radiation hybrid database.

Rodriguez-Tomé P, Lijnzaad P.

Nucleic Acids Res. 1999 Jan 1;27(1):115-8.

19.

Mapplet: a CORBA-based genome map viewer.

Jungfer K, Rodriguez-Tomé P.

Bioinformatics. 1998;14(8):734-8.

PMID:
9789099
20.

A physical map of 30,000 human genes.

Deloukas P, Schuler GD, Gyapay G, Beasley EM, Soderlund C, Rodriguez-Tomé P, Hui L, Matise TC, McKusick KB, Beckmann JS, Bentolila S, Bihoreau M, Birren BB, Browne J, Butler A, Castle AB, Chiannilkulchai N, Clee C, Day PJ, Dehejia A, Dibling T, Drouot N, Duprat S, Fizames C, Fox S, Gelling S, Green L, Harrison P, Hocking R, Holloway E, Hunt S, Keil S, Lijnzaad P, Louis-Dit-Sully C, Ma J, Mendis A, Miller J, Morissette J, Muselet D, Nusbaum HC, Peck A, Rozen S, Simon D, Slonim DK, Staples R, Stein LD, Stewart EA, Suchard MA, Thangarajah T, Vega-Czarny N, Webber C, Wu X, Hudson J, Auffray C, Nomura N, Sikela JM, Polymeropoulos MH, James MR, Lander ES, Hudson TJ, Myers RM, Cox DR, Weissenbach J, Boguski MS, Bentley DR.

Science. 1998 Oct 23;282(5389):744-6.

21.

The BioCatalog.

Rodriguez-Tomé P.

Bioinformatics. 1998 Jun;14(5):469-70.

PMID:
9682062
22.

IARC Database of p53 gene mutations in human tumors and cell lines: updated compilation, revised formats and new visualisation tools.

Hainaut P, Hernandez T, Robinson A, Rodriguez-Tome P, Flores T, Hollstein M, Harris CC, Montesano R.

Nucleic Acids Res. 1998 Jan 1;26(1):205-13.

23.

The Radiation Hybrid Database.

Lijnzaad P, Helgesen C, Rodriguez-Tomé P.

Nucleic Acids Res. 1998 Jan 1;26(1):102-5.

24.

A CORBA server for the Radiation Hybrid DataBase.

Rodriguez-Tomé P, Helgesen C, Lijnzaad P, Jungfer K.

Proc Int Conf Intell Syst Mol Biol. 1997;5:250-3.

PMID:
9322045
25.

Searching the dbEST database.

Rodriguez-Tomé P.

Methods Mol Biol. 1997;69:269-83. No abstract available.

PMID:
9116859
26.

The Radiation Hybrid Database.

Rodriguez-Tomé P, Lijnzaad P.

Nucleic Acids Res. 1997 Jan 1;25(1):81-4.

27.

A gene map of the human genome.

Schuler GD, Boguski MS, Stewart EA, Stein LD, Gyapay G, Rice K, White RE, Rodriguez-Tomé P, Aggarwal A, Bajorek E, Bentolila S, Birren BB, Butler A, Castle AB, Chiannilkulchai N, Chu A, Clee C, Cowles S, Day PJ, Dibling T, Drouot N, Dunham I, Duprat S, East C, Edwards C, Fan JB, Fang N, Fizames C, Garrett C, Green L, Hadley D, Harris M, Harrison P, Brady S, Hicks A, Holloway E, Hui L, Hussain S, Louis-Dit-Sully C, Ma J, MacGilvery A, Mader C, Maratukulam A, Matise TC, McKusick KB, Morissette J, Mungall A, Muselet D, Nusbaum HC, Page DC, Peck A, Perkins S, Piercy M, Qin F, Quackenbush J, Ranby S, Reif T, Rozen S, Sanders C, She X, Silva J, Slonim DK, Soderlund C, Sun WL, Tabar P, Thangarajah T, Vega-Czarny N, Vollrath D, Voyticky S, Wilmer T, Wu X, Adams MD, Auffray C, Walter NA, Brandon R, Dehejia A, Goodfellow PN, Houlgatte R, Hudson JR Jr, Ide SE, Iorio KR, Lee WY, Seki N, Nagase T, Ishikawa K, Nomura N, Phillips C, Polymeropoulos MH, Sandusky M, Schmitt K, Berry R, Swanson K, Torres R, Venter JC, Sikela JM, Beckmann JS, Weissenbach J, Myers RM, Cox DR, James MR, Bentley D, Deloukas P, Lander ES, Hudson TJ.

Science. 1996 Oct 25;274(5287):540-6. Review.

PMID:
8849440
28.

The European Bioinformatics Institute (EBI) databases.

Rodriguez-Tomé P, Stoehr PJ, Cameron GN, Flores TP.

Nucleic Acids Res. 1996 Jan 1;24(1):6-12.

29.

Dense Alu clustering and a potential new member of the NF kappa B family within a 90 kilobase HLA class III segment.

Iris FJ, Bougueleret L, Prieur S, Caterina D, Primas G, Perrot V, Jurka J, Rodriguez-Tome P, Claverie JM, Dausset J, et al.

Nat Genet. 1993 Feb;3(2):137-45.

PMID:
8499947

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