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Effects of exogenous amylase on the in vitro digestion kinetics of whole-crop maize silages made from flint or dent grain type at different phenological stages grown in tropical condition.

Silva AS, Pereira LGR, Pedreira MDS, Machado FS, Campos MM, Cortinhas CS, Acedo TS, Dos Santos RD, Rodrigues JPP, Maurício RM, Tomich TR.

J Anim Physiol Anim Nutr (Berl). 2019 Oct 31. doi: 10.1111/jpn.13234. [Epub ahead of print]


Fish-Eye Ampulla: A Rare Pathognomonic Sign.

Rodrigues JP, Fernandes S, Proença L, Carvalho J.

GE Port J Gastroenterol. 2019 Aug;26(5):375-377. doi: 10.1159/000494570. Epub 2018 Dec 6. No abstract available.


Less Is More: Coarse-Grained Integrative Modeling of Large Biomolecular Assemblies with HADDOCK.

Roel-Touris J, Don CG, V Honorato R, Rodrigues JPGLM, Bonvin AMJJ.

J Chem Theory Comput. 2019 Nov 12;15(11):6358-6367. doi: 10.1021/acs.jctc.9b00310. Epub 2019 Oct 10.


Baseline resistance associated substitutions in HCV genotype 1 infected cohort treated with Simeprevir, Daclatasvir and Sofosbuvir in Brazil.

Aguiar BF, Campos GRF, Rodrigues JPV, Marques NN, Molina BF, Bittar C, Souza FF, Martinelli ALC, Rahal P, Pereira LRL.

Clin Res Hepatol Gastroenterol. 2019 Sep 12. pii: S2210-7401(19)30181-0. doi: 10.1016/j.clinre.2019.07.015. [Epub ahead of print]


Solid phase microextraction as a powerful alternative for screening of secondary metabolites in actinomycetes.

Acquaro Junior VR, Rodrigues JP, Moraes LAB.

J Mass Spectrom. 2019 Oct;54(10):823-833. doi: 10.1002/jms.4434. Epub 2019 Oct 18.


The Anthelmintic Effect on Strongyloides venezuelensis Induced by BnSP- 6, a Lys49-phospholipase A2 Homologue from Bothrops pauloensis Venom.

Rodrigues JP, Vasconcelos Azevedo FVP, Zoia MAP, Maia LP, Correia LIV, Costa-Cruz JM, de Melo Rodrigues V, Goulart LR.

Curr Top Med Chem. 2019;19(22):2032-2040. doi: 10.2174/1568026619666190723152520.


Acute Mesenteric Ischemia Diagnosed after Emergent Single-Balloon Enteroscopy.

Gomes AC, Pinho R, Rodrigues JP, Sousa M, Silva JC, Carvalho J.

GE Port J Gastroenterol. 2019 Jul;26(4):290-292. doi: 10.1159/000492065. Epub 2018 Aug 31. No abstract available.


Depletion of Host Cell Focal Adhesion Kinase Increases the Susceptibility to Invasion by Trypanosoma cruzi Metacyclic Forms.

Onofre TS, Rodrigues JPF, Yoshida N.

Front Cell Infect Microbiol. 2019 Jun 26;9:231. doi: 10.3389/fcimb.2019.00231. eCollection 2019.


Endoscopic Management of a Rare Entity: Gastric Calcifying Fibrous Tumor.

Rodrigues JP, Pinho R, Tente D.

GE Port J Gastroenterol. 2019 Mar;26(2):139-141. doi: 10.1159/000487819. Epub 2018 Apr 6. No abstract available.


Oral infection of mice and host cell invasion by Trypanosoma cruzi strains from Mexico.

Barbosa CG, Gómez-Hernández C, Rezende-Oliveira K, Da Silva MV, Rodrigues JPF, Tiburcio MGS, Ferreira TB, Rodrigues V, Yoshida N, Ramirez LE.

Parasitol Res. 2019 May;118(5):1493-1500. doi: 10.1007/s00436-019-06254-5. Epub 2019 Mar 8.


CO2 adsorption in nitrogen-doped single-layered graphene quantum dots: a spectroscopic investigation.

de Oliveira Neto PH, Rodrigues JPCC, de Sousa LE, Gargano R, da Cunha WF.

J Mol Model. 2019 Feb 14;25(3):66. doi: 10.1007/s00894-019-3951-5.


pdb-tools: a swiss army knife for molecular structures.

Rodrigues JPGLM, Teixeira JMC, Trellet M, Bonvin AMJJ.

F1000Res. 2018 Dec 20;7:1961. doi: 10.12688/f1000research.17456.1. eCollection 2018.


Miliary Tuberculosis in a Crohn's Disease Patient: The Risk beyond the Screening.

Carvalho LP, Túlio MA, Rodrigues JP, Bana E Costa T, Chagas C.

GE Port J Gastroenterol. 2018 Dec;26(1):64-69. doi: 10.1159/000487297. Epub 2018 Mar 13.


Analysis of clinical pharmacist interventions in the neurology unit of a Brazilian tertiary teaching hospital.

Rodrigues JPV, Marques FA, Gonçalves AMRF, Campos MSA, Reis TMD, Morelo MRS, Fontoura A, Girolineto BMP, Souza HPMC, Cazarim MS, Maduro LCDS, Pereira LRL.

PLoS One. 2019 Jan 18;14(1):e0210779. doi: 10.1371/journal.pone.0210779. eCollection 2019.


Host cell protein LAMP-2 is the receptor for Trypanosoma cruzi surface molecule gp82 that mediates invasion.

Rodrigues JPF, Souza Onofre T, Barbosa BC, Ferreira ÉR, Bonfim-Melo A, Yoshida N.

Cell Microbiol. 2019 May;21(5):e13003. doi: 10.1111/cmi.13003. Epub 2019 Jan 17.


Evaluation of buffer solutions and urea addition for estimating the in vitro digestibility of feeds.

Camacho LF, Silva TE, Palma MNN, Assunção AS, Rodrigues JP, Costa E Silva LF, Detmann E.

J Anim Sci. 2019 Feb 1;97(2):922-931. doi: 10.1093/jas/sky464.


Publisher Correction: Structural insights into binding specificity, efficacy and bias of a β2AR partial agonist.

Masureel M, Zou Y, Picard LP, van der Westhuizen E, Mahoney JP, Rodrigues JPGLM, Mildorf TJ, Dror RO, Shaw DE, Bouvier M, Pardon E, Steyaert J, Sunahara RK, Weis WI, Zhang C, Kobilka BK.

Nat Chem Biol. 2019 Feb;15(2):205. doi: 10.1038/s41589-018-0182-5.


An Incidental Subepithelial Cecal Lesion.

Rodrigues JP, Correia D, Figueiredo P.

GE Port J Gastroenterol. 2018 Nov;25(6):335-336. doi: 10.1159/000486801. Epub 2018 Feb 27. No abstract available.


Peroral Endoscopic Myotomy with Water Pump-Assisted Submucosal Tunnel Creation.

Rodrigues JP, Barreiro P, Carina I, Carvalho L, Figueiredo P, Chagas C.

GE Port J Gastroenterol. 2018 Nov;25(6):331-332. doi: 10.1159/000486449. Epub 2018 Feb 13. No abstract available.


High Efficacy of Repeating Colonoscopy by an Advanced Endoscopist after an Incomplete Colonoscopy.

Ponte A, Pinho R, Rodrigues A, Proença L, Silva J, Rodrigues JP, Sousa M, Carlos Silva J, Carvalho J.

GE Port J Gastroenterol. 2018 Nov;25(6):285-290. doi: 10.1159/000485803. Epub 2018 Feb 6.


Functional traits of a native and an invasive clam of the genus Ruditapes occurring in sympatry in a coastal lagoon.

Lopes ML, Rodrigues JP, Crespo D, Dolbeth M, Calado R, Lillebø AI.

Sci Rep. 2018 Nov 15;8(1):16901. doi: 10.1038/s41598-018-34556-8.


Effects of soybean oil supplementation on performance, digestion and metabolism of early lactation dairy cows fed sugarcane-based diets.

Rodrigues JPP, de Paula RM, Rennó LN, Costa GP, Hamade VCE, Valadares Filho SC, Rennó FP, Marcondes MI.

Animal. 2019 Jun;13(6):1198-1207. doi: 10.1017/S1751731118002781. Epub 2018 Oct 31.


Yield of capsule endoscopy in obscure gastrointestinal bleeding: A comparative study between premenopausal and menopausal women.

Silva JC, Pinho R, Rodrigues A, Ponte A, Rodrigues JP, Sousa M, Gomes C, Carvalho J.

World J Gastrointest Endosc. 2018 Oct 16;10(10):301-307. doi: 10.4253/wjge.v10.i10.301.


In vitro screening of plants from the Brazilian Caatinga biome for methanogenic potential in ruminant nutrition.

Oliveira BS, Pereira LGR, Azevêdo JAG, Rodrigues JPP, de Araújo GGL, Maurício RM, Machado FS, Campos MM, Martins TLT, Tomich TR.

Environ Sci Pollut Res Int. 2018 Dec;25(35):35538-35547. doi: 10.1007/s11356-018-3446-4. Epub 2018 Oct 22.


Structural insights into binding specificity, efficacy and bias of a β2AR partial agonist.

Masureel M, Zou Y, Picard LP, van der Westhuizen E, Mahoney JP, Rodrigues JPGLM, Mildorf TJ, Dror RO, Shaw DE, Bouvier M, Pardon E, Steyaert J, Sunahara RK, Weis WI, Zhang C, Kobilka BK.

Nat Chem Biol. 2018 Nov;14(11):1059-1066. doi: 10.1038/s41589-018-0145-x. Epub 2018 Oct 16. Erratum in: Nat Chem Biol. 2019 Feb;15(2):205.


Bioguided isolation, characterization and media optimization for production of Lysolipins by actinomycete as antimicrobial compound against Xanthomonas citri subsp. citri.

Rodrigues JP, Peti APF, Figueiró FS, de Souza Rocha I, Junior VRA, Silva TG, de Melo IS, Behlau F, Moraes LAB.

Mol Biol Rep. 2018 Dec;45(6):2455-2467. doi: 10.1007/s11033-018-4411-5. Epub 2018 Oct 11.


Once Upon a Time in the Esophagus.

Rodrigues JP, Baldaque-Silva F.

Gastroenterology. 2019 Mar;156(4):874-875. doi: 10.1053/j.gastro.2018.10.002. Epub 2018 Oct 6. No abstract available.


Characterization and mapping of secondary metabolites of Streptomyces sp. from caatinga by desorption electrospray ionization mass spectrometry (DESI-MS).

Rodrigues JP, Prova SS, Moraes LAB, Ifa DR.

Anal Bioanal Chem. 2018 Nov;410(27):7135-7144. doi: 10.1007/s00216-018-1315-0. Epub 2018 Sep 8.


Genetic diversity of promising 'conilon' coffee clones based on morpho-agronomic variables.

Giles JAD, Partelli FL, Ferreira A, Rodrigues JP, Oliosi G, Silva FHLE.

An Acad Bras Cienc. 2018 Aug;90(2 suppl 1):2437-2446. doi: 10.1590/0001-3765201820170523.


Diagnostic and therapeutic yields of urgent balloon-assisted enteroscopy in overt obscure gastrointestinal bleeding.

Rodrigues JP, Pinho R, Rodrigues A, Sousa M, Silva JC, Gomes C, Freitas T, Pinto-Pais T, Carvalho J.

Eur J Gastroenterol Hepatol. 2018 Nov;30(11):1304-1308. doi: 10.1097/MEG.0000000000001244.


Fleeting Angiodysplasia.

Rodrigues JP, Chivia J, Figueiredo PC.

GE Port J Gastroenterol. 2018 Jun;25(4):203-204. doi: 10.1159/000481176. Epub 2017 Oct 7. No abstract available.


Hepatitis C in Brazil: lessons learned with boceprevir and telaprevir.

Gomes LO, Teixeira MR, Rosa JAD, Feltrin AA, Rodrigues JPV, Vecchi MD, Carneiro JMM, Noblat LACB, Chachá SGF, Martinelli ALC, Pereira LRL, Silveira MPT, Blatt CR, Farias MR.

Rev Inst Med Trop Sao Paulo. 2018;60:e29. doi: 10.1590/s1678-9946201860029. Epub 2018 Jun 28.


Defining distance restraints in HADDOCK.

Bonvin AMJJ, Karaca E, Kastritis PL, Rodrigues JPGLM.

Nat Protoc. 2018 Jul;13(7):1503. doi: 10.1038/s41596-018-0017-6. Epub 2018 Jun 25. No abstract available.


Underwater endoscopic mucosal resection of a laterally spreading tumor overlying a previous endoscopic carbon tattoo.

Rodrigues JP, Pinho R, Sousa M, Silva JC, Gomes C, Carvalho J.

Endoscopy. 2018 Sep;50(9):E231-E232. doi: 10.1055/a-0624-1362. Epub 2018 Jun 19. No abstract available.


First-wave protease inhibitors for hepatitis C genotype 1 treatment: a real-life experience in Brazilian patients.

Chachá SGF, Rodrigues JPV, Araújo RC, Pereira LRL, Villanova MG, Souza FF, Santana RC, Martinelli ALC.

Rev Soc Bras Med Trop. 2018 Mar-Apr;51(2):146-154. doi: 10.1590/0037-8682-0153-2017.


Stenosis of Hepaticojejunal Anastomosis with Intrahepatic Lithiasis: Treatment with Single-Balloon Enteroscopy-Assisted ERCP.

Rodrigues JP, Pinho R, Proença L, Silva J, Ponte A, Sousa M, Carlos Silva J, Carvalho J.

GE Port J Gastroenterol. 2018 Apr;25(3):160-162. doi: 10.1159/000484251. Epub 2017 Nov 16. No abstract available.


Impact of the timing of capsule endoscopy in overt obscure gastrointestinal bleeding on yield and rebleeding rate - is sooner than 14 d advisable?

Gomes C, Pinho R, Rodrigues A, Ponte A, Silva J, Rodrigues JP, Sousa M, Silva JC, Carvalho J.

World J Gastrointest Endosc. 2018 Apr 16;10(4):74-82. doi: 10.4253/wjge.v10.i4.74.


The solution structure of monomeric CCL5 in complex with a doubly sulfated N-terminal segment of CCR5.

Abayev M, Rodrigues JPGLM, Srivastava G, Arshava B, Jaremko Ł, Jaremko M, Naider F, Levitt M, Anglister J.

FEBS J. 2018 Jun;285(11):1988-2003. doi: 10.1111/febs.14460. Epub 2018 Apr 20.


Augmenting Research, Education, and Outreach with Client-Side Web Programming.

Abriata LA, Rodrigues JPGLM, Salathé M, Patiny L.

Trends Biotechnol. 2018 May;36(5):473-476. doi: 10.1016/j.tibtech.2017.11.009. Epub 2017 Dec 15.


Mechanisms of regulation of normal and metaplastic intestinal differentiation.

Rodrigues JP, David L, Almeida R, Barros R, Freitas T, Silva J, Ponte A, Sousa M, Silva JC, Carvalho J.

Histol Histopathol. 2018 Jun;33(6):523-532. doi: 10.14670/HH-11-938. Epub 2017 Oct 13. Review.


Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.

Kurkcuoglu Z, Koukos PI, Citro N, Trellet ME, Rodrigues JPGLM, Moreira IS, Roel-Touris J, Melquiond ASJ, Geng C, Schaarschmidt J, Xue LC, Vangone A, Bonvin AMJJ.

J Comput Aided Mol Des. 2018 Jan;32(1):175-185. doi: 10.1007/s10822-017-0049-y. Epub 2017 Aug 22.


M3: an integrative framework for structure determination of molecular machines.

Karaca E, Rodrigues JPGLM, Graziadei A, Bonvin AMJJ, Carlomagno T.

Nat Methods. 2017 Sep;14(9):897-902. doi: 10.1038/nmeth.4392. Epub 2017 Aug 14.


Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).

Vangone A, Rodrigues JPGLM, Xue LC, van Zundert GCP, Geng C, Kurkcuoglu Z, Nellen M, Narasimhan S, Karaca E, van Dijk M, Melquiond ASJ, Visscher KM, Trellet M, Kastritis PL, Bonvin AMJJ.

Proteins. 2017 Aug;85(8):1589-1590. doi: 10.1002/prot.25339. No abstract available.


Appropriateness of the study of iron deficiency anemia prior to referral for small bowel evaluation at a tertiary center.

Rodrigues JP, Pinho R, Silva J, Ponte A, Sousa M, Silva JC, Carvalho J.

World J Gastroenterol. 2017 Jun 28;23(24):4444-4453. doi: 10.3748/wjg.v23.i24.4444.


Supramolecular Organization and Functional Implications of K+  Channel Clusters in Membranes.

Visscher KM, Medeiros-Silva J, Mance D, Rodrigues JPGLM, Daniëls M, Bonvin AMJJ, Baldus M, Weingarth M.

Angew Chem Int Ed Engl. 2017 Oct 16;56(43):13222-13227. doi: 10.1002/anie.201705723. Epub 2017 Aug 9.


Inhibition of Host Cell Lysosome Spreading by Trypanosoma cruzi Metacyclic Stage-Specific Surface Molecule gp90 Downregulates Parasite Invasion.

Rodrigues JPF, Sant'ana GHT, Juliano MA, Yoshida N.

Infect Immun. 2017 Aug 18;85(9). pii: e00302-17. doi: 10.1128/IAI.00302-17. Print 2017 Sep.


Energy and protein requirements of Santa Ines lambs, a breed of hair sheep.

Pereira ES, Lima FWR, Marcondes MI, Rodrigues JPP, Campos ACN, Silva LP, Bezerra LR, Pereira MWF, Oliveira RL.

Animal. 2017 Dec;11(12):2165-2174. doi: 10.1017/S1751731117001185. Epub 2017 Jun 5.


Short-term effects of soybean oil supplementation on performance, digestion, and metabolism in dairy cows fed sugarcane-based diets.

Rodrigues JPP, de Paula RM, Rennó LN, Fontes MMS, Machado AF, de C Valadares Filho S, Huhtanen P, Marcondes MI.

J Dairy Sci. 2017 Jun;100(6):4435-4447. doi: 10.3168/jds.2016-11725. Epub 2017 Apr 21.


Structural and Functional Analysis of a β2-Adrenergic Receptor Complex with GRK5.

Komolov KE, Du Y, Duc NM, Betz RM, Rodrigues JPGLM, Leib RD, Patra D, Skiniotis G, Adams CM, Dror RO, Chung KY, Kobilka BK, Benovic JL.

Cell. 2017 Apr 20;169(3):407-421.e16. doi: 10.1016/j.cell.2017.03.047.


S. mansoni-T. cruzi co-infection modulates arginase-1/iNOS expression, liver and heart disease in mice.

Rodrigues JPF, Caldas IS, Gonçalves RV, Almeida LA, Souza RLM, Novaes RD.

Nitric Oxide. 2017 Jun 1;66:43-52. doi: 10.1016/j.niox.2017.02.013. Epub 2017 Mar 6.


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