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Items: 1 to 50 of 62

1.

[Whole genome transplantation: bringing natural or synthetic bacterial genomes back to life].

Labroussaa F, Baby V, Rodrigue S, Lartigue C.

Med Sci (Paris). 2019 Oct;35(10):761-770. doi: 10.1051/medsci/2019154. Epub 2019 Oct 18. French.

PMID:
31625898
2.

[Synthetic chromosomes: rewriting the code of life].

Baby V, Labroussaa F, Lartigue C, Rodrigue S.

Med Sci (Paris). 2019 Oct;35(10):753-760. doi: 10.1051/medsci/2019153. Epub 2019 Oct 18. French.

PMID:
31625897
3.

Assembly of large mobilizable genetic cargo by double recombinase operated insertion of DNA (DROID).

Neil K, Allard N, Jordan D, Rodrigue S.

Plasmid. 2019 Jul;104:102419. doi: 10.1016/j.plasmid.2019.102419. Epub 2019 Jun 25.

PMID:
31247227
4.

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data.

Lachance JC, Lloyd CJ, Monk JM, Yang L, Sastry AV, Seif Y, Palsson BO, Rodrigue S, Feist AM, King ZA, Jacques PÉ.

PLoS Comput Biol. 2019 Apr 22;15(4):e1006971. doi: 10.1371/journal.pcbi.1006971. eCollection 2019 Apr.

5.

Minimal cells, maximal knowledge.

Lachance JC, Rodrigue S, Palsson BO.

Elife. 2019 Mar 12;8. pii: e45379. doi: 10.7554/eLife.45379.

6.

Common mechanism of transcription termination at coding and noncoding RNA genes in fission yeast.

Larochelle M, Robert MA, Hébert JN, Liu X, Matteau D, Rodrigue S, Tian B, Jacques PÉ, Bachand F.

Nat Commun. 2018 Oct 19;9(1):4364. doi: 10.1038/s41467-018-06546-x.

7.

Corrigendum: Translatome analysis of an NB-LRR immune response identifies important contributors to plant immunity in Arabidopsis.

Meteignier LV, El Oirdi M, Cohen M, Barff T, Matteau D, Lucier JF, Rodrigue S, Jacques PE, Yoshioka K, Moffett P.

J Exp Bot. 2018 Jun 27;69(15):3785. doi: 10.1093/jxb/ery150. No abstract available.

PMID:
29878155
8.

Inferring the Minimal Genome of Mesoplasma florum by Comparative Genomics and Transposon Mutagenesis.

Baby V, Lachance JC, Gagnon J, Lucier JF, Matteau D, Knight T, Rodrigue S.

mSystems. 2018 Apr 10;3(3). pii: e00198-17. doi: 10.1128/mSystems.00198-17. eCollection 2018 May-Jun.

9.

Tomatidine Is a Lead Antibiotic Molecule That Targets Staphylococcus aureus ATP Synthase Subunit C.

Lamontagne Boulet M, Isabelle C, Guay I, Brouillette E, Langlois JP, Jacques PÉ, Rodrigue S, Brzezinski R, Beauregard PB, Bouarab K, Boyapelly K, Boudreault PL, Marsault É, Malouin F.

Antimicrob Agents Chemother. 2018 May 25;62(6). pii: e02197-17. doi: 10.1128/AAC.02197-17. Print 2018 Jun.

10.

Cloning and Transplantation of the Mesoplasma florum Genome.

Baby V, Labroussaa F, Brodeur J, Matteau D, Gourgues G, Lartigue C, Rodrigue S.

ACS Synth Biol. 2018 Jan 19;7(1):209-217. doi: 10.1021/acssynbio.7b00279. Epub 2017 Oct 3.

PMID:
28893065
11.

Translatome analysis of an NB-LRR immune response identifies important contributors to plant immunity in Arabidopsis.

Meteignier LV, El Oirdi M, Cohen M, Barff T, Matteau D, Lucier JF, Rodrigue S, Jacques PE, Yoshioka K, Moffett P.

J Exp Bot. 2017 Apr 1;68(9):2333-2344. doi: 10.1093/jxb/erx078. Erratum in: J Exp Bot. 2018 Jun 27;69(15):3785.

PMID:
28369573
12.

Development of oriC-Based Plasmids for Mesoplasma florum.

Matteau D, Pepin ME, Baby V, Gauthier S, Arango Giraldo M, Knight TF, Rodrigue S.

Appl Environ Microbiol. 2017 Mar 17;83(7). pii: e03374-16. doi: 10.1128/AEM.03374-16. Print 2017 Apr 1.

13.

High-Resolution Genome-Wide Mapping of Nucleosome Positioning and Occupancy Level Using Paired-End Sequencing Technology.

Brunelle M, Rodrigue S, Jacques PÉ, Gévry N.

Methods Mol Biol. 2017;1528:229-243.

PMID:
27854025
14.

Impact of donor-recipient phylogenetic distance on bacterial genome transplantation.

Labroussaa F, Lebaudy A, Baby V, Gourgues G, Matteau D, Vashee S, Sirand-Pugnet P, Rodrigue S, Lartigue C.

Nucleic Acids Res. 2016 Sep 30;44(17):8501-11. doi: 10.1093/nar/gkw688. Epub 2016 Aug 3.

15.

Dual leucine zipper kinase regulates expression of axon guidance genes in mouse neuronal cells.

Blondeau A, Lucier JF, Matteau D, Dumont L, Rodrigue S, Jacques PÉ, Blouin R.

Neural Dev. 2016 Jul 28;11(1):13. doi: 10.1186/s13064-016-0068-8.

16.

Unraveling the regulatory network of IncA/C plasmid mobilization: When genomic islands hijack conjugative elements.

Carraro N, Matteau D, Burrus V, Rodrigue S.

Mob Genet Elements. 2015 May 21;5(3):1-5. eCollection 2015 May-Jun.

17.

Global Mapping of Open Chromatin Regulatory Elements by Formaldehyde-Assisted Isolation of Regulatory Elements Followed by Sequencing (FAIRE-seq).

Bianco S, Rodrigue S, Murphy BD, Gévry N.

Methods Mol Biol. 2015;1334:261-72. doi: 10.1007/978-1-4939-2877-4_17.

PMID:
26404156
18.

Selection and Validation of Spacer Sequences for CRISPR-Cas9 Genome Editing and Transcription Regulation in Bacteria.

Grenier F, Lucier JF, Rodrigue S.

Methods Mol Biol. 2015;1334:233-44. doi: 10.1007/978-1-4939-2877-4_15.

PMID:
26404154
19.

Precise Identification of DNA-Binding Proteins Genomic Location by Exonuclease Coupled Chromatin Immunoprecipitation (ChIP-exo).

Matteau D, Rodrigue S.

Methods Mol Biol. 2015;1334:173-93. doi: 10.1007/978-1-4939-2877-4_11.

PMID:
26404150
20.

Precise Identification of Genome-Wide Transcription Start Sites in Bacteria by 5'-Rapid Amplification of cDNA Ends (5'-RACE).

Matteau D, Rodrigue S.

Methods Mol Biol. 2015;1334:143-59. doi: 10.1007/978-1-4939-2877-4_9.

PMID:
26404148
21.

The histone variant H2A.Z is an important regulator of enhancer activity.

Brunelle M, Nordell Markovits A, Rodrigue S, Lupien M, Jacques PÉ, Gévry N.

Nucleic Acids Res. 2015 Nov 16;43(20):9742-56. doi: 10.1093/nar/gkv825. Epub 2015 Aug 28.

22.

A Small-Volume, Low-Cost, and Versatile Continuous Culture Device.

Matteau D, Baby V, Pelletier S, Rodrigue S.

PLoS One. 2015 Jul 21;10(7):e0133384. doi: 10.1371/journal.pone.0133384. eCollection 2015.

23.

Transfer activation of SXT/R391 integrative and conjugative elements: unraveling the SetCD regulon.

Poulin-Laprade D, Matteau D, Jacques PÉ, Rodrigue S, Burrus V.

Nucleic Acids Res. 2015 Feb 27;43(4):2045-56. doi: 10.1093/nar/gkv071. Epub 2015 Feb 6.

24.

The master activator of IncA/C conjugative plasmids stimulates genomic islands and multidrug resistance dissemination.

Carraro N, Matteau D, Luo P, Rodrigue S, Burrus V.

PLoS Genet. 2014 Oct 23;10(10):e1004714. doi: 10.1371/journal.pgen.1004714. eCollection 2014 Oct.

25.

Complete Genome Sequence of Escherichia coli BW25113.

Grenier F, Matteau D, Baby V, Rodrigue S.

Genome Announc. 2014 Oct 16;2(5). pii: e01038-14. doi: 10.1128/genomeA.01038-14.

26.

Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus.

Kashtan N, Roggensack SE, Rodrigue S, Thompson JW, Biller SJ, Coe A, Ding H, Marttinen P, Malmstrom RR, Stocker R, Follows MJ, Stepanauskas R, Chisholm SW.

Science. 2014 Apr 25;344(6182):416-20. doi: 10.1126/science.1248575.

27.

Development of pVCR94ΔX from Vibrio cholerae, a prototype for studying multidrug resistant IncA/C conjugative plasmids.

Carraro N, Sauvé M, Matteau D, Lauzon G, Rodrigue S, Burrus V.

Front Microbiol. 2014 Feb 6;5:44. doi: 10.3389/fmicb.2014.00044. eCollection 2014.

28.

Complete Genome Sequence of the Mesoplasma florum W37 Strain.

Baby V, Matteau D, Knight TF, Rodrigue S.

Genome Announc. 2013 Nov 27;1(6). pii: e00879-13. doi: 10.1128/genomeA.00879-13.

29.

Comparative analysis of mobilizable genomic islands.

Daccord A, Ceccarelli D, Rodrigue S, Burrus V.

J Bacteriol. 2013 Feb;195(3):606-14. doi: 10.1128/JB.01985-12. Epub 2012 Nov 30.

30.

Biochemical and molecular characterization of a thermostable chitosanase produced by the strain Paenibacillus sp. 1794 newly isolated from compost.

Zitouni M, Fortin M, Scheerle RK, Letzel T, Matteau D, Rodrigue S, Brzezinski R.

Appl Microbiol Biotechnol. 2013 Jul;97(13):5801-13. doi: 10.1007/s00253-012-4483-4. Epub 2012 Oct 18.

PMID:
23076590
31.

Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle.

Waldbauer JR, Rodrigue S, Coleman ML, Chisholm SW.

PLoS One. 2012;7(8):e43432. doi: 10.1371/journal.pone.0043432. Epub 2012 Aug 29.

32.

Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis.

Malmstrom RR, Rodrigue S, Huang KH, Kelly L, Kern SE, Thompson A, Roggensack S, Berube PM, Henn MR, Chisholm SW.

ISME J. 2013 Jan;7(1):184-98. doi: 10.1038/ismej.2012.89. Epub 2012 Aug 16.

33.

Unlocking short read sequencing for metagenomics.

Rodrigue S, Materna AC, Timberlake SC, Blackburn MC, Malmstrom RR, Alm EJ, Chisholm SW.

PLoS One. 2010 Jul 28;5(7):e11840. doi: 10.1371/journal.pone.0011840.

34.

Lobe transport analysis of the Kelvin-Stuart cat's eyes driven flow.

Rodrigue SM, Eschenazi EV.

Chaos. 2010 Mar;20(1):013101. doi: 10.1063/1.3272714.

PMID:
20370256
35.

Cyclotron production of 99mTc: an approach to the medical isotope crisis.

Guérin B, Tremblay S, Rodrigue S, Rousseau JA, Dumulon-Perreault V, Lecomte R, van Lier JE, Zyuzin A, van Lier EJ.

J Nucl Med. 2010 Apr;51(4):13N-6N. No abstract available.

36.

Whole genome amplification and de novo assembly of single bacterial cells.

Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, Chisholm SW.

PLoS One. 2009 Sep 2;4(9):e6864. doi: 10.1371/journal.pone.0006864.

37.

Activation of the eis gene in a W-Beijing strain of Mycobacterium tuberculosis correlates with increased SigA levels and enhanced intracellular growth.

Wu S, Barnes PF, Samten B, Pang X, Rodrigue S, Ghanny S, Soteropoulos P, Gaudreau L, Howard ST.

Microbiology. 2009 Apr;155(Pt 4):1272-81. doi: 10.1099/mic.0.024638-0.

38.

Evidence of complex transcriptional, translational, and posttranslational regulation of the extracytoplasmic function sigma factor sigmaE in Mycobacterium tuberculosis.

Donà V, Rodrigue S, Dainese E, Palù G, Gaudreau L, Manganelli R, Provvedi R.

J Bacteriol. 2008 Sep;190(17):5963-71. doi: 10.1128/JB.00622-08. Epub 2008 Jul 7.

39.

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus.

Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, Rodrigue S, Chen F, Lapidus A, Ferriera S, Johnson J, Steglich C, Church GM, Richardson P, Chisholm SW.

PLoS Genet. 2007 Dec;3(12):e231.

40.

Polyphosphate kinase is involved in stress-induced mprAB-sigE-rel signalling in mycobacteria.

Sureka K, Dey S, Datta P, Singh AK, Dasgupta A, Rodrigue S, Basu J, Kundu M.

Mol Microbiol. 2007 Jul;65(2):261-76.

41.

Automated synthesis of 11C-acetoacetic acid, a key alternate brain fuel to glucose.

Tremblay S, Ouellet R, Rodrigue S, Langlois R, Bénard F, Cunnane SC.

Appl Radiat Isot. 2007 Aug;65(8):934-40. Epub 2007 Mar 28.

PMID:
17544283
42.
43.

Identification of mycobacterial sigma factor binding sites by chromatin immunoprecipitation assays.

Rodrigue S, Brodeur J, Jacques PE, Gervais AL, Brzezinski R, Gaudreau L.

J Bacteriol. 2007 Mar;189(5):1505-13. Epub 2006 Dec 8.

44.

The sigma factors of Mycobacterium tuberculosis.

Rodrigue S, Provvedi R, Jacques PE, Gaudreau L, Manganelli R.

FEMS Microbiol Rev. 2006 Nov;30(6):926-41. Review.

45.

Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs.

Jacques PE, Rodrigue S, Gaudreau L, Goulet J, Brzezinski R.

BMC Bioinformatics. 2006 Oct 2;7:423.

46.

Posttranslational regulation of Mycobacterium tuberculosis extracytoplasmic-function sigma factor sigma L and roles in virulence and in global regulation of gene expression.

Dainese E, Rodrigue S, Delogu G, Provvedi R, Laflamme L, Brzezinski R, Fadda G, Smith I, Gaudreau L, Palù G, Manganelli R.

Infect Immun. 2006 Apr;74(4):2457-61.

47.

A recombinant Mycobacterium tuberculosis in vitro transcription system.

Jacques JF, Rodrigue S, Brzezinski R, Gaudreau L.

FEMS Microbiol Lett. 2006 Feb;255(1):140-7.

48.

Respiratory gating for 3-dimensional PET of the thorax: feasibility and initial results.

Boucher L, Rodrigue S, Lecomte R, Bénard F.

J Nucl Med. 2004 Feb;45(2):214-9.

49.

Sigma factors and global gene regulation in Mycobacterium tuberculosis.

Manganelli R, Provvedi R, Rodrigue S, Beaucher J, Gaudreau L, Smith I.

J Bacteriol. 2004 Feb;186(4):895-902. Review. No abstract available. Erratum in: J Bacteriol. 2004 Apr;186(8):2516. Proveddi, Roberta [corrected to Provvedi, Roberta].

50.

Role of stress, arousal, and coping skills in primary insomnia.

Morin CM, Rodrigue S, Ivers H.

Psychosom Med. 2003 Mar-Apr;65(2):259-67.

PMID:
12651993

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