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Items: 1 to 50 of 60

1.

A Not-So-Long Introduction to Computational Molecular Evolution.

Aris-Brosou S, Rodrigue N.

Methods Mol Biol. 2019;1910:71-117. doi: 10.1007/978-1-4939-9074-0_3.

PMID:
31278662
2.

Clonal evolution and genome stability in a 2500-year-old fungal individual.

Anderson JB, Bruhn JN, Kasimer D, Wang H, Rodrigue N, Smith ML.

Proc Biol Sci. 2018 Dec 19;285(1893):20182233. doi: 10.1098/rspb.2018.2233.

PMID:
30963893
3.

Detecting amino acid preference shifts with codon-level mutation-selection mixture models.

Kazmi SO, Rodrigue N.

BMC Evol Biol. 2019 Feb 26;19(1):62. doi: 10.1186/s12862-019-1358-7.

4.

Conditional Approximate Bayesian Computation: A New Approach for Across-Site Dependency in High-Dimensional Mutation-Selection Models.

Laurin-Lemay S, Rodrigue N, Lartillot N, Philippe H.

Mol Biol Evol. 2018 Nov 1;35(11):2819-2834. doi: 10.1093/molbev/msy173.

PMID:
30203003
5.

Multiple Factors Confounding Phylogenetic Detection of Selection on Codon Usage.

Laurin-Lemay S, Philippe H, Rodrigue N.

Mol Biol Evol. 2018 Jun 1;35(6):1463-1472. doi: 10.1093/molbev/msy047.

PMID:
29596640
6.

COMPASS: the COMPletely Arbitrary Sequence Simulator.

Low A, Rodrigue N, Wong A.

Bioinformatics. 2017 Oct 1;33(19):3101-3103. doi: 10.1093/bioinformatics/btx347.

7.

Experiences of Older Adult Trauma Patients Discharged Home From a Level I Trauma Center.

Rodrigue N, Laizner AM, Tze N, Sewitch M.

J Trauma Nurs. 2017 May/Jun;24(3):182-192. doi: 10.1097/JTN.0000000000000288.

PMID:
28486325
8.
9.

Genomics of Compensatory Adaptation in Experimental Populations of Aspergillus nidulans.

Dettman JR, Rodrigue N, Schoustra SE, Kassen R.

G3 (Bethesda). 2017 Feb 9;7(2):427-436. doi: 10.1534/g3.116.036152.

10.

Detecting Adaptation in Protein-Coding Genes Using a Bayesian Site-Heterogeneous Mutation-Selection Codon Substitution Model.

Rodrigue N, Lartillot N.

Mol Biol Evol. 2017 Jan;34(1):204-214. doi: 10.1093/molbev/msw220. Epub 2016 Oct 15.

11.

Grouping substitution types into different relaxed molecular clocks.

Lee HJ, Kishino H, Rodrigue N, Thorne JL.

Philos Trans R Soc Lond B Biol Sci. 2016 Jul 19;371(1699). pii: 20150141. doi: 10.1098/rstb.2015.0141.

12.

Relaxing the Molecular Clock to Different Degrees for Different Substitution Types.

Lee HJ, Rodrigue N, Thorne JL.

Mol Biol Evol. 2015 Aug;32(8):1948-61. doi: 10.1093/molbev/msv099. Epub 2015 Apr 29.

13.

The effect of selection environment on the probability of parallel evolution.

Bailey SF, Rodrigue N, Kassen R.

Mol Biol Evol. 2015 Jun;32(6):1436-48. doi: 10.1093/molbev/msv033. Epub 2015 Mar 11.

PMID:
25761765
14.

Genome-wide patterns of recombination in the opportunistic human pathogen Pseudomonas aeruginosa.

Dettman JR, Rodrigue N, Kassen R.

Genome Biol Evol. 2014 Dec 4;7(1):18-34. doi: 10.1093/gbe/evu260.

15.

Codon-based phylogenetics introduces novel flagellar gene markers to oomycete systematics.

Robideau GP, Rodrigue N, André Lévesque C.

Mol Phylogenet Evol. 2014 Oct;79:279-91. doi: 10.1016/j.ympev.2014.04.009. Epub 2014 Apr 16.

PMID:
24747002
16.

Site-heterogeneous mutation-selection models within the PhyloBayes-MPI package.

Rodrigue N, Lartillot N.

Bioinformatics. 2014 Apr 1;30(7):1020-1. doi: 10.1093/bioinformatics/btt729. Epub 2013 Dec 18.

17.

Evolutionary genomics of epidemic and nonepidemic strains of Pseudomonas aeruginosa.

Dettman JR, Rodrigue N, Aaron SD, Kassen R.

Proc Natl Acad Sci U S A. 2013 Dec 24;110(52):21065-70. doi: 10.1073/pnas.1307862110. Epub 2013 Dec 9.

18.

Description of behaviors in nonverbal critically ill patients with a traumatic brain injury when exposed to common procedures in the intensive care unit: a pilot study.

Le Q, Gélinas C, Arbour C, Rodrigue N.

Pain Manag Nurs. 2013 Dec;14(4):e251-e261. doi: 10.1016/j.pmn.2012.02.005. Epub 2012 Mar 30.

PMID:
24315278
19.

Population divergence in the wheat leaf rust fungus Puccinia triticina is correlated with wheat evolution.

Liu M, Rodrigue N, Kolmer J.

Heredity (Edinb). 2014 Apr;112(4):443-53. doi: 10.1038/hdy.2013.123. Epub 2013 Dec 4.

20.

A descriptive study of bicycle helmet use in Montreal, 2011.

Grenier T, Deckelbaum DL, Boulva K, Drudi L, Feyz M, Rodrigue N, Tze N, Fata P, Khwaja K, Chughtai T, Razek T.

Can J Public Health. 2013 Sep 17;104(5):e400-4.

PMID:
24183181
21.

PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment.

Lartillot N, Rodrigue N, Stubbs D, Richer J.

Syst Biol. 2013 Jul;62(4):611-5. doi: 10.1093/sysbio/syt022. Epub 2013 Apr 5.

PMID:
23564032
22.

Microevolution of symbiotic Bradyrhizobium populations associated with soybeans in east North America.

Tang J, Bromfield ES, Rodrigue N, Cloutier S, Tambong JT.

Ecol Evol. 2012 Dec;2(12):2943-61. doi: 10.1002/ece3.404. Epub 2012 Oct 22.

23.

On the statistical interpretation of site-specific variables in phylogeny-based substitution models.

Rodrigue N.

Genetics. 2013 Feb;193(2):557-64. doi: 10.1534/genetics.112.145722. Epub 2012 Dec 5.

24.

Genomics of adaptation during experimental evolution of the opportunistic pathogen Pseudomonas aeruginosa.

Wong A, Rodrigue N, Kassen R.

PLoS Genet. 2012 Sep;8(9):e1002928. doi: 10.1371/journal.pgen.1002928. Epub 2012 Sep 13.

25.

The essentials of computational molecular evolution.

Aris-Brosou S, Rodrigue N.

Methods Mol Biol. 2012;855:111-52. doi: 10.1007/978-1-61779-582-4_4. Review.

PMID:
22407707
26.

Evolutionary insight from whole-genome sequencing of experimentally evolved microbes.

Dettman JR, Rodrigue N, Melnyk AH, Wong A, Bailey SF, Kassen R.

Mol Ecol. 2012 May;21(9):2058-77. doi: 10.1111/j.1365-294X.2012.05484.x. Epub 2012 Feb 14. Review.

PMID:
22332770
27.

Fast Bayesian choice of phylogenetic models: prospecting data augmentation-based thermodynamic integration.

Rodrigue N, Aris-Brosou S.

Syst Biol. 2011 Dec;60(6):881-7. doi: 10.1093/sysbio/syr065. Epub 2011 Jul 29. No abstract available.

PMID:
21804092
28.

Mechanistic revisions of phenomenological modeling strategies in molecular evolution.

Rodrigue N, Philippe H.

Trends Genet. 2010 Jun;26(6):248-52. doi: 10.1016/j.tig.2010.04.001. Epub 2010 May 6.

PMID:
20452086
29.

Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles.

Rodrigue N, Philippe H, Lartillot N.

Proc Natl Acad Sci U S A. 2010 Mar 9;107(10):4629-34. doi: 10.1073/pnas.0910915107. Epub 2010 Feb 22.

30.

Statistical potentials for improved structurally constrained evolutionary models.

Kleinman CL, Rodrigue N, Lartillot N, Philippe H.

Mol Biol Evol. 2010 Jul;27(7):1546-60. doi: 10.1093/molbev/msq047. Epub 2010 Feb 16.

PMID:
20159780
31.

A dirichlet process covarion mixture model and its assessments using posterior predictive discrepancy tests.

Zhou Y, Brinkmann H, Rodrigue N, Lartillot N, Philippe H.

Mol Biol Evol. 2010 Feb;27(2):371-84. doi: 10.1093/molbev/msp248. Epub 2009 Oct 12.

PMID:
19822637
32.

Fast optimization of statistical potentials for structurally constrained phylogenetic models.

Bonnard C, Kleinman CL, Rodrigue N, Lartillot N.

BMC Evol Biol. 2009 Sep 9;9:227. doi: 10.1186/1471-2148-9-227.

33.

Computational methods for evaluating phylogenetic models of coding sequence evolution with dependence between codons.

Rodrigue N, Kleinman CL, Philippe H, Lartillot N.

Mol Biol Evol. 2009 Jul;26(7):1663-76. doi: 10.1093/molbev/msp078. Epub 2009 Apr 21.

PMID:
19383983
34.

Bayesian comparisons of codon substitution models.

Rodrigue N, Lartillot N, Philippe H.

Genetics. 2008 Nov;180(3):1579-91. doi: 10.1534/genetics.108.092254. Epub 2008 Sep 14.

35.

Barriers and facilitators to caring for individuals with stroke in the community: the family's experience.

White CL, Korner-Bitensky N, Rodrigue N, Rosmus C, Sourial R, Lambert S, Wood-Dauphinee S.

Can J Neurosci Nurs. 2007;29(2):5-12.

PMID:
18240626
36.

Uniformization for sampling realizations of Markov processes: applications to Bayesian implementations of codon substitution models.

Rodrigue N, Philippe H, Lartillot N.

Bioinformatics. 2008 Jan 1;24(1):56-62. Epub 2007 Nov 14.

PMID:
18003644
37.

Evaluation of the models handling heterotachy in phylogenetic inference.

Zhou Y, Rodrigue N, Lartillot N, Philippe H.

BMC Evol Biol. 2007 Nov 1;7:206.

38.

Exploring fast computational strategies for probabilistic phylogenetic analysis.

Rodrigue N, Philippe H, Lartillot N.

Syst Biol. 2007 Oct;56(5):711-26.

PMID:
17849326
39.

A maximum likelihood framework for protein design.

Kleinman CL, Rodrigue N, Bonnard C, Philippe H, Lartillot N.

BMC Bioinformatics. 2006 Jun 29;7:326.

40.

Assessing site-interdependent phylogenetic models of sequence evolution.

Rodrigue N, Philippe H, Lartillot N.

Mol Biol Evol. 2006 Sep;23(9):1762-75. Epub 2006 Jun 20.

PMID:
16787998
41.

Heterotachy and long-branch attraction in phylogenetics.

Philippe H, Zhou Y, Brinkmann H, Rodrigue N, Delsuc F.

BMC Evol Biol. 2005 Oct 6;5:50.

42.

Site interdependence attributed to tertiary structure in amino acid sequence evolution.

Rodrigue N, Lartillot N, Bryant D, Philippe H.

Gene. 2005 Mar 14;347(2):207-17. Epub 2005 Feb 19.

PMID:
15733531
43.
44.

Meeting the nutritional needs of patients with severe dysphagia following a stroke: an interdisciplinary approach.

Rodrigue N, Côté R, Kirsch C, Germain C, Couturier C, Fraser R.

Axone. 2002 Mar;23(3):31-7.

PMID:
14621495
45.

Antimicrobial effect of natural preservatives in a cooked and acidified chicken meat model.

Lemay MJ, Choquette J, Delaquis PJ, Claude G, Rodrigue N, Saucier L.

Int J Food Microbiol. 2002 Oct 25;78(3):217-26.

PMID:
12227640
46.

Myocardial blood flow after chronic cardiac decentralization in anesthetized dogs: effects of ACE-inhibition.

Rouleau JR, Simard D, Rodrigue N, Blouin A, Kingma JG Jr.

Auton Neurosci. 2002 Apr 18;97(1):12-8.

PMID:
12036181
47.
48.

Adaptation of Lactobacillus alimentarius to environmental stresses.

Lemay MJ, Rodrigue N, Gariépy C, Saucier L.

Int J Food Microbiol. 2000 Apr 10;55(1-3):249-53.

PMID:
10791752
49.

Effect of growth temperature on hydrolytic and esterifying activities from pseudomonas fragi CRDA 037 grown on whey

Fonchy E, Morin A, Rodrigue N, Muller B, Chalier P.

Appl Environ Microbiol. 1999 Jul;65(7):3114-20.

50.

Functionality of high and low voltage electrically stimulated beef chilled under moderate and rapid chilling regimes.

Gariépy C, Delaquis PJ, Aalhus JL, Robertson M, Leblanc C, Rodrigue N.

Meat Sci. 1995;39(2):301-10.

PMID:
22059836

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