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Items: 1 to 50 of 191

1.

Thermodynamic control of -1 programmed ribosomal frameshifting.

Bock LV, Caliskan N, Korniy N, Peske F, Rodnina MV, Grubmüller H.

Nat Commun. 2019 Oct 10;10(1):4598. doi: 10.1038/s41467-019-12648-x.

2.

Converting GTP hydrolysis into motion: versatile translational elongation factor G.

Rodnina MV, Peske F, Peng BZ, Belardinelli R, Wintermeyer W.

Biol Chem. 2019 Oct 1. pii: /j/bchm.just-accepted/hsz-2019-0313/hsz-2019-0313.xml. doi: 10.1515/hsz-2019-0313. [Epub ahead of print]

PMID:
31600135
3.

Translational recoding: canonical translation mechanisms reinterpreted.

Rodnina MV, Korniy N, Klimova M, Karki P, Peng BZ, Senyushkina T, Belardinelli R, Maracci C, Wohlgemuth I, Samatova E, Peske F.

Nucleic Acids Res. 2019 Sep 12. pii: gkz783. doi: 10.1093/nar/gkz783. [Epub ahead of print]

PMID:
31511883
4.

Mechanisms and biomedical implications of -1 programmed ribosome frameshifting on viral and bacterial mRNAs.

Korniy N, Samatova E, Anokhina MM, Peske F, Rodnina MV.

FEBS Lett. 2019 Jul;593(13):1468-1482. doi: 10.1002/1873-3468.13478. Epub 2019 Jun 20.

5.

EF-G-induced ribosome sliding along the noncoding mRNA.

Klimova M, Senyushkina T, Samatova E, Peng BZ, Pearson M, Peske F, Rodnina MV.

Sci Adv. 2019 Jun 5;5(6):eaaw9049. doi: 10.1126/sciadv.aaw9049. eCollection 2019 Jun.

6.

Modulation of HIV-1 Gag/Gag-Pol frameshifting by tRNA abundance.

Korniy N, Goyal A, Hoffmann M, Samatova E, Peske F, Pöhlmann S, Rodnina MV.

Nucleic Acids Res. 2019 Jun 4;47(10):5210-5222. doi: 10.1093/nar/gkz202.

7.

Broad range of missense error frequencies in cellular proteins.

Garofalo R, Wohlgemuth I, Pearson M, Lenz C, Urlaub H, Rodnina MV.

Nucleic Acids Res. 2019 Apr 8;47(6):2932-2945. doi: 10.1093/nar/gky1319.

8.

Functions of unconventional mammalian translational GTPases GTPBP1 and GTPBP2.

Zinoviev A, Goyal A, Jindal S, LaCava J, Komar AA, Rodnina MV, Hellen CUT, Pestova TV.

Genes Dev. 2018 Sep 1;32(17-18):1226-1241. doi: 10.1101/gad.314724.118. Epub 2018 Aug 14.

9.

Small synthetic molecule-stabilized RNA pseudoknot as an activator for -1 ribosomal frameshifting.

Matsumoto S, Caliskan N, Rodnina MV, Murata A, Nakatani K.

Nucleic Acids Res. 2018 Sep 19;46(16):8079-8089. doi: 10.1093/nar/gky689.

10.

Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1.

Graf M, Huter P, Maracci C, Peterek M, Rodnina MV, Wilson DN.

Nat Commun. 2018 Aug 3;9(1):3053. doi: 10.1038/s41467-018-05465-1.

11.

Dynamics of ribosomes and release factors during translation termination in E. coli.

Adio S, Sharma H, Senyushkina T, Karki P, Maracci C, Wohlgemuth I, Holtkamp W, Peske F, Rodnina MV.

Elife. 2018 Jun 11;7. pii: e34252. doi: 10.7554/eLife.34252.

12.

Co-Translational Folding Trajectory of the HemK Helical Domain.

Mercier E, Rodnina MV.

Biochemistry. 2018 Jun 26;57(25):3460-3464. doi: 10.1021/acs.biochem.8b00293. Epub 2018 May 14.

PMID:
29741886
13.

Translation in Prokaryotes.

Rodnina MV.

Cold Spring Harb Perspect Biol. 2018 Sep 4;10(9). pii: a032664. doi: 10.1101/cshperspect.a032664. Review.

PMID:
29661790
14.

Translation initiation in bacterial polysomes through ribosome loading on a standby site on a highly translated mRNA.

Andreeva I, Belardinelli R, Rodnina MV.

Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4411-4416. doi: 10.1073/pnas.1718029115. Epub 2018 Apr 9.

15.

Signal recognition particle binds to translating ribosomes before emergence of a signal anchor sequence.

Mercier E, Holtkamp W, Rodnina MV, Wintermeyer W.

Nucleic Acids Res. 2017 Nov 16;45(20):11858-11866. doi: 10.1093/nar/gkx888.

16.

Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P.

Huter P, Arenz S, Bock LV, Graf M, Frister JO, Heuer A, Peil L, Starosta AL, Wohlgemuth I, Peske F, Nováček J, Berninghausen O, Grubmüller H, Tenson T, Beckmann R, Rodnina MV, Vaiana AC, Wilson DN.

Mol Cell. 2017 Nov 2;68(3):515-527.e6. doi: 10.1016/j.molcel.2017.10.014.

17.

Non-canonical Binding Site for Bacterial Initiation Factor 3 on the Large Ribosomal Subunit.

Goyal A, Belardinelli R, Rodnina MV.

Cell Rep. 2017 Sep 26;20(13):3113-3122. doi: 10.1016/j.celrep.2017.09.012.

18.

Effect of Fusidic Acid on the Kinetics of Molecular Motions During EF-G-Induced Translocation on the Ribosome.

Belardinelli R, Rodnina MV.

Sci Rep. 2017 Sep 5;7(1):10536. doi: 10.1038/s41598-017-10916-8.

19.

An antimicrobial peptide that inhibits translation by trapping release factors on the ribosome.

Florin T, Maracci C, Graf M, Karki P, Klepacki D, Berninghausen O, Beckmann R, Vázquez-Laslop N, Wilson DN, Rodnina MV, Mankin AS.

Nat Struct Mol Biol. 2017 Sep;24(9):752-757. doi: 10.1038/nsmb.3439. Epub 2017 Jul 24.

20.

Ribosome rearrangements at the onset of translational bypassing.

Agirrezabala X, Samatova E, Klimova M, Zamora M, Gil-Carton D, Rodnina MV, Valle M.

Sci Adv. 2017 Jun 7;3(6):e1700147. doi: 10.1126/sciadv.1700147. eCollection 2017 Jun.

21.

Conditional Switch between Frameshifting Regimes upon Translation of dnaX mRNA.

Caliskan N, Wohlgemuth I, Korniy N, Pearson M, Peske F, Rodnina MV.

Mol Cell. 2017 May 18;66(4):558-567.e4. doi: 10.1016/j.molcel.2017.04.023.

22.

Thio-Modification of tRNA at the Wobble Position as Regulator of the Kinetics of Decoding and Translocation on the Ribosome.

Ranjan N, Rodnina MV.

J Am Chem Soc. 2017 Apr 26;139(16):5857-5864. doi: 10.1021/jacs.7b00727. Epub 2017 Apr 13.

PMID:
28368583
23.

Ribosome dynamics during decoding.

Rodnina MV, Fischer N, Maracci C, Stark H.

Philos Trans R Soc Lond B Biol Sci. 2017 Mar 19;372(1716). pii: 20160182. doi: 10.1098/rstb.2016.0182. Review.

24.

Co-translational protein folding: progress and methods.

Thommen M, Holtkamp W, Rodnina MV.

Curr Opin Struct Biol. 2017 Feb;42:83-89. doi: 10.1016/j.sbi.2016.11.020. Epub 2016 Dec 9. Review.

PMID:
27940242
25.

The pathway to GTPase activation of elongation factor SelB on the ribosome.

Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schröder GF, Grubmüller H, Ficner R, Rodnina MV, Stark H.

Nature. 2016 Dec 1;540(7631):80-85. doi: 10.1038/nature20560. Epub 2016 Nov 14.

PMID:
27842381
26.

Translocation as continuous movement through the ribosome.

Belardinelli R, Sharma H, Peske F, Wintermeyer W, Rodnina MV.

RNA Biol. 2016 Dec;13(12):1197-1203. Epub 2016 Nov 1.

27.

Kinetics of Spontaneous and EF-G-Accelerated Rotation of Ribosomal Subunits.

Sharma H, Adio S, Senyushkina T, Belardinelli R, Peske F, Rodnina MV.

Cell Rep. 2016 Aug 23;16(8):2187-2196. doi: 10.1016/j.celrep.2016.07.051. Epub 2016 Aug 11.

28.

NSUN3 and ABH1 modify the wobble position of mt-tRNAMet to expand codon recognition in mitochondrial translation.

Haag S, Sloan KE, Ranjan N, Warda AS, Kretschmer J, Blessing C, Hübner B, Seikowski J, Dennerlein S, Rehling P, Rodnina MV, Höbartner C, Bohnsack MT.

EMBO J. 2016 Oct 4;35(19):2104-2119. Epub 2016 Aug 5.

29.

tRNA wobble modifications and protein homeostasis.

Ranjan N, Rodnina MV.

Translation (Austin). 2016 Jan 28;4(1):e1143076. doi: 10.1080/21690731.2016.1143076. eCollection 2016 Jan-Jun. Review.

30.

Essential structural elements in tRNA(Pro) for EF-P-mediated alleviation of translation stalling.

Katoh T, Wohlgemuth I, Nagano M, Rodnina MV, Suga H.

Nat Commun. 2016 May 24;7:11657. doi: 10.1038/ncomms11657.

31.

The ribosome in action: Tuning of translational efficiency and protein folding.

Rodnina MV.

Protein Sci. 2016 Aug;25(8):1390-406. doi: 10.1002/pro.2950. Epub 2016 Jun 8. Review.

32.

Protein Elongation, Co-translational Folding and Targeting.

Rodnina MV, Wintermeyer W.

J Mol Biol. 2016 May 22;428(10 Pt B):2165-85. doi: 10.1016/j.jmb.2016.03.022. Epub 2016 Mar 30. Review.

PMID:
27038507
33.

Choreography of molecular movements during ribosome progression along mRNA.

Belardinelli R, Sharma H, Caliskan N, Cunha CE, Peske F, Wintermeyer W, Rodnina MV.

Nat Struct Mol Biol. 2016 Apr;23(4):342-8. doi: 10.1038/nsmb.3193. Epub 2016 Mar 21.

PMID:
26999556
34.

Review: Translational GTPases.

Maracci C, Rodnina MV.

Biopolymers. 2016 Aug;105(8):463-75. doi: 10.1002/bip.22832. Review.

35.

Synonymous Codons Direct Cotranslational Folding toward Different Protein Conformations.

Buhr F, Jha S, Thommen M, Mittelstaet J, Kutz F, Schwalbe H, Rodnina MV, Komar AA.

Mol Cell. 2016 Feb 4;61(3):341-351. doi: 10.1016/j.molcel.2016.01.008.

36.

Cotranslational protein folding on the ribosome monitored in real time.

Holtkamp W, Kokic G, Jäger M, Mittelstaet J, Komar AA, Rodnina MV.

Science. 2015 Nov 27;350(6264):1104-7. doi: 10.1126/science.aad0344.

37.

Activities of the peptidyl transferase center of ribosomes lacking protein L27.

Maracci C, Wohlgemuth I, Rodnina MV.

RNA. 2015 Dec;21(12):2047-52. doi: 10.1261/rna.053330.115. Epub 2015 Oct 16.

38.

Entropic Contribution of Elongation Factor P to Proline Positioning at the Catalytic Center of the Ribosome.

Doerfel LK, Wohlgemuth I, Kubyshkin V, Starosta AL, Wilson DN, Budisa N, Rodnina MV.

J Am Chem Soc. 2015 Oct 14;137(40):12997-3006. doi: 10.1021/jacs.5b07427. Epub 2015 Oct 5.

PMID:
26384033
39.

Directional transition from initiation to elongation in bacterial translation.

Goyal A, Belardinelli R, Maracci C, Milón P, Rodnina MV.

Nucleic Acids Res. 2015 Dec 15;43(22):10700-12. doi: 10.1093/nar/gkv869. Epub 2015 Sep 3.

40.

Fluctuations between multiple EF-G-induced chimeric tRNA states during translocation on the ribosome.

Adio S, Senyushkina T, Peske F, Fischer N, Wintermeyer W, Rodnina MV.

Nat Commun. 2015 Jun 15;6:7442. doi: 10.1038/ncomms8442.

41.

Partitioning between recoding and termination at a stop codon-selenocysteine insertion sequence.

Kotini SB, Peske F, Rodnina MV.

Nucleic Acids Res. 2015 Jul 27;43(13):6426-38. doi: 10.1093/nar/gkv558. Epub 2015 Jun 3.

42.

Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases.

Byrne RT, Jenkins HT, Peters DT, Whelan F, Stowell J, Aziz N, Kasatsky P, Rodnina MV, Koonin EV, Konevega AL, Antson AA.

Proc Natl Acad Sci U S A. 2015 May 12;112(19):6033-7. doi: 10.1073/pnas.1500161112. Epub 2015 Apr 22.

43.

Changed in translation: mRNA recoding by -1 programmed ribosomal frameshifting.

Caliskan N, Peske F, Rodnina MV.

Trends Biochem Sci. 2015 May;40(5):265-74. doi: 10.1016/j.tibs.2015.03.006. Epub 2015 Apr 4. Review.

PMID:
25850333
44.

Structure of the E. coli ribosome-EF-Tu complex at <3 Å resolution by Cs-corrected cryo-EM.

Fischer N, Neumann P, Konevega AL, Bock LV, Ficner R, Rodnina MV, Stark H.

Nature. 2015 Apr 23;520(7548):567-70. doi: 10.1038/nature14275. Epub 2015 Feb 23.

PMID:
25707802
45.

Deducing the kinetics of protein synthesis in vivo from the transition rates measured in vitro.

Rudorf S, Thommen M, Rodnina MV, Lipowsky R.

PLoS Comput Biol. 2014 Oct 30;10(10):e1003909. doi: 10.1371/journal.pcbi.1003909. eCollection 2014 Oct.

46.

Lateral opening of the bacterial translocon on ribosome binding and signal peptide insertion.

Ge Y, Draycheva A, Bornemann T, Rodnina MV, Wintermeyer W.

Nat Commun. 2014 Oct 15;5:5263. doi: 10.1038/ncomms6263.

47.

Amicoumacin a inhibits translation by stabilizing mRNA interaction with the ribosome.

Polikanov YS, Osterman IA, Szal T, Tashlitsky VN, Serebryakova MV, Kusochek P, Bulkley D, Malanicheva IA, Efimenko TA, Efremenkova OV, Konevega AL, Shaw KJ, Bogdanov AA, Rodnina MV, Dontsova OA, Mankin AS, Steitz TA, Sergiev PV.

Mol Cell. 2014 Nov 20;56(4):531-40. doi: 10.1016/j.molcel.2014.09.020. Epub 2014 Oct 9.

48.

Ribosome-induced tuning of GTP hydrolysis by a translational GTPase.

Maracci C, Peske F, Dannies E, Pohl C, Rodnina MV.

Proc Natl Acad Sci U S A. 2014 Oct 7;111(40):14418-23. doi: 10.1073/pnas.1412676111. Epub 2014 Sep 22.

49.

Structural basis for the inhibition of the eukaryotic ribosome.

Garreau de Loubresse N, Prokhorova I, Holtkamp W, Rodnina MV, Yusupova G, Yusupov M.

Nature. 2014 Sep 25;513(7519):517-22. doi: 10.1038/nature13737. Epub 2014 Sep 10.

PMID:
25209664
50.

Synchronous tRNA movements during translocation on the ribosome are orchestrated by elongation factor G and GTP hydrolysis.

Holtkamp W, Wintermeyer W, Rodnina MV.

Bioessays. 2014 Oct;36(10):908-18. doi: 10.1002/bies.201400076. Epub 2014 Aug 13. Review.

PMID:
25118068

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