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Items: 23

1.

Novel Metabolic Pathways and Regulons for Hexuronate Utilization in Proteobacteria.

Bouvier JT, Sernova NV, Ghasempur S, Rodionova IA, Vetting MW, Al-Obaidi NF, Almo SC, Gerlt JA, Rodionov DA.

J Bacteriol. 2018 Dec 20;201(2). pii: e00431-18. doi: 10.1128/JB.00431-18. Print 2019 Jan 15.

2.

The uridylyltransferase GlnD and tRNA modification GTPase MnmE allosterically control Escherichia coli folylpoly-γ-glutamate synthase FolC.

Rodionova IA, Goodacre N, Do J, Hosseinnia A, Babu M, Uetz P, Saier MH Jr.

J Biol Chem. 2018 Oct 5;293(40):15725-15732. doi: 10.1074/jbc.RA118.004425. Epub 2018 Aug 8.

PMID:
30089654
3.

The Nitrogen Regulatory PII Protein (GlnB) and N-Acetylglucosamine 6-Phosphate Epimerase (NanE) Allosterically Activate Glucosamine 6-Phosphate Deaminase (NagB) in Escherichia coli.

Rodionova IA, Goodacre N, Babu M, Emili A, Uetz P, Saier MH Jr.

J Bacteriol. 2018 Feb 7;200(5). pii: e00691-17. doi: 10.1128/JB.00691-17. Print 2018 Mar 1.

4.

The phosphocarrier protein HPr of the bacterial phosphotransferase system globally regulates energy metabolism by directly interacting with multiple enzymes in Escherichia coli.

Rodionova IA, Zhang Z, Mehla J, Goodacre N, Babu M, Emili A, Uetz P, Saier MH Jr.

J Biol Chem. 2017 Aug 25;292(34):14250-14257. doi: 10.1074/jbc.M117.795294. Epub 2017 Jun 20.

5.

Elucidation of roles for vitamin B12 in regulation of folate, ubiquinone, and methionine metabolism.

Romine MF, Rodionov DA, Maezato Y, Anderson LN, Nandhikonda P, Rodionova IA, Carre A, Li X, Xu C, Clauss TR, Kim YM, Metz TO, Wright AT.

Proc Natl Acad Sci U S A. 2017 Feb 14;114(7):E1205-E1214. doi: 10.1073/pnas.1612360114. Epub 2017 Jan 30.

6.

A novel bifunctional transcriptional regulator of riboflavin metabolism in Archaea.

Rodionova IA, Vetting MW, Li X, Almo SC, Osterman AL, Rodionov DA.

Nucleic Acids Res. 2017 Apr 20;45(7):3785-3799. doi: 10.1093/nar/gkw1331.

7.

A Novel Transcriptional Regulator Related to Thiamine Phosphate Synthase Controls Thiamine Metabolism Genes in Archaea.

Rodionov DA, Leyn SA, Li X, Rodionova IA.

J Bacteriol. 2017 Jan 30;199(4). pii: e00743-16. doi: 10.1128/JB.00743-16. Print 2017 Feb 15.

8.

Novel Transcriptional Regulons for Autotrophic Cycle Genes in Crenarchaeota.

Leyn SA, Rodionova IA, Li X, Rodionov DA.

J Bacteriol. 2015 Jul;197(14):2383-91. doi: 10.1128/JB.00249-15. Epub 2015 May 4.

9.

Mycobacterial nicotinate mononucleotide adenylyltransferase: structure, mechanism, and implications for drug discovery.

Rodionova IA, Zuccola HJ, Sorci L, Aleshin AE, Kazanov MD, Ma CT, Sergienko E, Rubin EJ, Locher CP, Osterman AL.

J Biol Chem. 2015 Mar 20;290(12):7693-706. doi: 10.1074/jbc.M114.628016. Epub 2015 Jan 28.

10.

Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chloroflexi phylum.

Rodionova IA, Li X, Plymale AE, Motamedchaboki K, Konopka AE, Romine MF, Fredrickson JK, Osterman AL, Rodionov DA.

Environ Microbiol Rep. 2015 Apr;7(2):204-10. doi: 10.1111/1758-2229.12227. Epub 2014 Dec 17.

PMID:
25345570
11.

Metabolic and bactericidal effects of targeted suppression of NadD and NadE enzymes in mycobacteria.

Rodionova IA, Schuster BM, Guinn KM, Sorci L, Scott DA, Li X, Kheterpal I, Shoen C, Cynamon M, Locher C, Rubin EJ, Osterman AL.

MBio. 2014 Feb 18;5(1). pii: e00747-13. doi: 10.1128/mBio.00747-13.

12.

Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria.

Rodionova IA, Li X, Thiel V, Stolyar S, Stanton K, Fredrickson JK, Bryant DA, Osterman AL, Best AA, Rodionov DA.

Front Microbiol. 2013 Dec 23;4:407. doi: 10.3389/fmicb.2013.00407. eCollection 2013.

13.

The COMBREX project: design, methodology, and initial results.

Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.

PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27. No abstract available.

14.

Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima.

Rodionov DA, Rodionova IA, Li X, Ravcheev DA, Tarasova Y, Portnoy VA, Zengler K, Osterman AL.

Front Microbiol. 2013 Aug 23;4:244. doi: 10.3389/fmicb.2013.00244. eCollection 2013.

15.

Novel inositol catabolic pathway in Thermotoga maritima.

Rodionova IA, Leyn SA, Burkart MD, Boucher N, Noll KM, Osterman AL, Rodionov DA.

Environ Microbiol. 2013 Aug;15(8):2254-66. doi: 10.1111/1462-2920.12096. Epub 2013 Feb 27.

PMID:
23441918
16.

Quinolinate salvage and insights for targeting NAD biosynthesis in group A streptococci.

Sorci L, Blaby IK, Rodionova IA, De Ingeniis J, Tkachenko S, de Crécy-Lagard V, Osterman AL.

J Bacteriol. 2013 Feb;195(4):726-32. doi: 10.1128/JB.02002-12. Epub 2012 Nov 30.

17.

Tagaturonate-fructuronate epimerase UxaE, a novel enzyme in the hexuronate catabolic network in Thermotoga maritima.

Rodionova IA, Scott DA, Grishin NV, Osterman AL, Rodionov DA.

Environ Microbiol. 2012 Nov;14(11):2920-34. doi: 10.1111/j.1462-2920.2012.02856.x. Epub 2012 Aug 23.

18.

Diversity and versatility of the Thermotoga maritima sugar kinome.

Rodionova IA, Yang C, Li X, Kurnasov OV, Best AA, Osterman AL, Rodionov DA.

J Bacteriol. 2012 Oct;194(20):5552-63. Epub 2012 Aug 10.

19.

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.

Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S3. doi: 10.1186/1471-2164-12-S1-S3.

20.

Genomic encyclopedia of sugar utilization pathways in the Shewanella genus.

Rodionov DA, Yang C, Li X, Rodionova IA, Wang Y, Obraztsova AY, Zagnitko OP, Overbeek R, Romine MF, Reed S, Fredrickson JK, Nealson KH, Osterman AL.

BMC Genomics. 2010 Sep 13;11:494. doi: 10.1186/1471-2164-11-494.

21.

A novel class of modular transporters for vitamins in prokaryotes.

Rodionov DA, Hebbeln P, Eudes A, ter Beek J, Rodionova IA, Erkens GB, Slotboom DJ, Gelfand MS, Osterman AL, Hanson AD, Eitinger T.

J Bacteriol. 2009 Jan;191(1):42-51. doi: 10.1128/JB.01208-08. Epub 2008 Oct 17.

22.

Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon.

Rodionov DA, Li X, Rodionova IA, Yang C, Sorci L, Dervyn E, Martynowski D, Zhang H, Gelfand MS, Osterman AL.

Nucleic Acids Res. 2008 Apr;36(6):2032-46. doi: 10.1093/nar/gkn046. Epub 2008 Feb 14.

23.

Glycerate 2-kinase of Thermotoga maritima and genomic reconstruction of related metabolic pathways.

Yang C, Rodionov DA, Rodionova IA, Li X, Osterman AL.

J Bacteriol. 2008 Mar;190(5):1773-82. Epub 2007 Dec 21.

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