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Items: 49

1.

Dependency Between Protein-Protein Interactions and Protein Variability and Evolutionary Rates in Vertebrates: Observed Relationships and Stochastic Modeling.

Wang X, Branciamore S, Gogoshin G, Rodin AS.

J Mol Evol. 2019 Jul;87(4-6):184-198. doi: 10.1007/s00239-019-09899-z. Epub 2019 Jul 13.

2.

Intrinsic Properties of tRNA Molecules as Deciphered via Bayesian Network and Distribution Divergence Analysis.

Branciamore S, Gogoshin G, Di Giulio M, Rodin AS.

Life (Basel). 2018 Feb 8;8(1). pii: E5. doi: 10.3390/life8010005.

3.

Analysis of high-resolution 3D intrachromosomal interactions aided by Bayesian network modeling.

Zhang X, Branciamore S, Gogoshin G, Rodin AS, Riggs AD.

Proc Natl Acad Sci U S A. 2017 Nov 28;114(48):E10359-E10368. doi: 10.1073/pnas.1620425114. Epub 2017 Nov 13.

4.

Resolving the Spatial Structures of Bound Hole States in Black Phosphorus.

Qiu Z, Fang H, Carvalho A, Rodin AS, Liu Y, Tan SJR, Telychko M, Lv P, Su J, Wang Y, Castro Neto AH, Lu J.

Nano Lett. 2017 Nov 8;17(11):6935-6940. doi: 10.1021/acs.nanolett.7b03356. Epub 2017 Oct 20.

PMID:
29035538
5.

[Macular drusen variability: multimodal imaging potential].

Semenova NS, Akopyan VS, Rodin AS.

Vestn Oftalmol. 2016;132(6):78-86. doi: 10.17116/oftalma2016132678-86. Russian.

PMID:
28121303
6.

New Algorithm and Software (BNOmics) for Inferring and Visualizing Bayesian Networks from Heterogeneous Big Biological and Genetic Data.

Gogoshin G, Boerwinkle E, Rodin AS.

J Comput Biol. 2017 Apr;24(4):340-356. doi: 10.1089/cmb.2016.0100. Epub 2016 Sep 28.

7.

Two-dimensional exciton properties in monolayer semiconducting phosphorus allotropes.

Villegas CE, Rodin AS, Carvalho A, Rocha AR.

Phys Chem Chem Phys. 2016 Oct 12;18(40):27829-27836.

PMID:
27711643
8.

Multiferroic Two-Dimensional Materials.

Seixas L, Rodin AS, Carvalho A, Castro Neto AH.

Phys Rev Lett. 2016 May 20;116(20):206803. doi: 10.1103/PhysRevLett.116.206803. Epub 2016 May 20.

PMID:
27258881
9.

Tunneling Plasmonics in Bilayer Graphene.

Fei Z, Iwinski EG, Ni GX, Zhang LM, Bao W, Rodin AS, Lee Y, Wagner M, Liu MK, Dai S, Goldflam MD, Thiemens M, Keilmann F, Lau CN, Castro-Neto AH, Fogler MM, Basov DN.

Nano Lett. 2015 Aug 12;15(8):4973-8. doi: 10.1021/acs.nanolett.5b00912. Epub 2015 Aug 3.

PMID:
26222509
10.

Colossal Ultraviolet Photoresponsivity of Few-Layer Black Phosphorus.

Wu J, Koon GK, Xiang D, Han C, Toh CT, Kulkarni ES, Verzhbitskiy I, Carvalho A, Rodin AS, Koenig SP, Eda G, Chen W, Neto AH, Özyilmaz B.

ACS Nano. 2015 Aug 25;9(8):8070-7. doi: 10.1021/acsnano.5b01922. Epub 2015 Jul 30.

PMID:
26207324
11.

Tuning and Persistent Switching of Graphene Plasmons on a Ferroelectric Substrate.

Goldflam MD, Ni GX, Post KW, Fei Z, Yeo Y, Tan JY, Rodin AS, Chapler BC, Özyilmaz B, Castro Neto AH, Fogler MM, Basov DN.

Nano Lett. 2015 Aug 12;15(8):4859-64. doi: 10.1021/acs.nanolett.5b00125. Epub 2015 Jul 20.

PMID:
26181908
12.

Longitudinal epigenetic and gene expression profiles analyzed by three-component analysis reveal down-regulation of genes involved in protein translation in human aging.

Jung M, Jin SG, Zhang X, Xiong W, Gogoshin G, Rodin AS, Pfeifer GP.

Nucleic Acids Res. 2015 Sep 3;43(15):e100. doi: 10.1093/nar/gkv473. Epub 2015 May 14.

13.

Unusual angular dependence of the Raman response in black phosphorus.

Ribeiro HB, Pimenta MA, de Matos CJ, Moreira RL, Rodin AS, Zapata JD, de Souza EA, Castro Neto AH.

ACS Nano. 2015 Apr 28;9(4):4270-6. doi: 10.1021/acsnano.5b00698. Epub 2015 Mar 16.

PMID:
25752593
14.

Spin-orbit proximity effect in graphene.

Avsar A, Tan JY, Taychatanapat T, Balakrishnan J, Koon GK, Yeo Y, Lahiri J, Carvalho A, Rodin AS, O'Farrell EC, Eda G, Castro Neto AH, Özyilmaz B.

Nat Commun. 2014 Sep 26;5:4875. doi: 10.1038/ncomms5875.

PMID:
25255743
15.

Strain-induced gap modification in black phosphorus.

Rodin AS, Carvalho A, Castro Neto AH.

Phys Rev Lett. 2014 May 2;112(17):176801. Epub 2014 May 1.

PMID:
24836264
16.

Enhanced evolution by stochastically variable modification of epigenetic marks in the early embryo.

Branciamore S, Rodin AS, Riggs AD, Rodin SN.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6353-8. doi: 10.1073/pnas.1402585111. Epub 2014 Apr 14.

17.

Tunable phonon polaritons in atomically thin van der Waals crystals of boron nitride.

Dai S, Fei Z, Ma Q, Rodin AS, Wagner M, McLeod AS, Liu MK, Gannett W, Regan W, Watanabe K, Taniguchi T, Thiemens M, Dominguez G, Castro Neto AH, Zettl A, Keilmann F, Jarillo-Herrero P, Fogler MM, Basov DN.

Science. 2014 Mar 7;343(6175):1125-9. doi: 10.1126/science.1246833.

18.

Ultrafast and nanoscale plasmonic phenomena in exfoliated graphene revealed by infrared pump-probe nanoscopy.

Wagner M, Fei Z, McLeod AS, Rodin AS, Bao W, Iwinski EG, Zhao Z, Goldflam M, Liu M, Dominguez G, Thiemens M, Fogler MM, Castro Neto AH, Lau CN, Amarie S, Keilmann F, Basov DN.

Nano Lett. 2014 Feb 12;14(2):894-900. doi: 10.1021/nl4042577. Epub 2014 Jan 30.

19.

Electronic and plasmonic phenomena at graphene grain boundaries.

Fei Z, Rodin AS, Gannett W, Dai S, Regan W, Wagner M, Liu MK, McLeod AS, Dominguez G, Thiemens M, Castro Neto AH, Keilmann F, Zettl A, Hillenbrand R, Fogler MM, Basov DN.

Nat Nanotechnol. 2013 Nov;8(11):821-5. doi: 10.1038/nnano.2013.197. Epub 2013 Oct 13.

20.

Gate-tuning of graphene plasmons revealed by infrared nano-imaging.

Fei Z, Rodin AS, Andreev GO, Bao W, McLeod AS, Wagner M, Zhang LM, Zhao Z, Thiemens M, Dominguez G, Fogler MM, Castro Neto AH, Lau CN, Keilmann F, Basov DN.

Nature. 2012 Jul 5;487(7405):82-5. doi: 10.1038/nature11253.

PMID:
22722866
21.

Systems biology data analysis methodology in pharmacogenomics.

Rodin AS, Gogoshin G, Boerwinkle E.

Pharmacogenomics. 2011 Sep;12(9):1349-60. doi: 10.2217/pgs.11.76. Review.

22.

On origin of genetic code and tRNA before translation.

Rodin AS, Szathmáry E, Rodin SN.

Biol Direct. 2011 Feb 22;6:14. doi: 10.1186/1745-6150-6-14.

23.

Variants of ADAMTS1 modify the effectiveness of statins in reducing the risk of myocardial infarction.

Peters BJ, Rodin AS, Klungel OH, Stricker BH, de Boer A, Maitland-van der Zee AH.

Pharmacogenet Genomics. 2010 Dec;20(12):766-74. doi: 10.1097/FPC.0b013e328340aded.

PMID:
21037509
24.

Apparent power-law behavior of conductance in disordered quasi-one-dimensional systems.

Rodin AS, Fogler MM.

Phys Rev Lett. 2010 Sep 3;105(10):106801. Epub 2010 Sep 1.

PMID:
20867536
25.

Pharmacogenetic interactions between ABCB1 and SLCO1B1 tagging SNPs and the effectiveness of statins in the prevention of myocardial infarction.

Peters BJ, Rodin AS, Klungel OH, van Duijn CM, Stricker BH, van't Slot R, de Boer A, Maitland-van der Zee AH.

Pharmacogenomics. 2010 Aug;11(8):1065-76. doi: 10.2217/pgs.10.81.

PMID:
20712525
26.

Methodological and statistical issues in pharmacogenomics.

Peters BJ, Rodin AS, de Boer A, Maitland-van der Zee AH.

J Pharm Pharmacol. 2010 Feb;62(2):161-6. doi: 10.1211/jpp.62.02.0002. Review.

PMID:
20487194
27.

Use of wrapper algorithms coupled with a random forests classifier for variable selection in large-scale genomic association studies.

Rodin AS, Litvinenko A, Klos K, Morrison AC, Woodage T, Coresh J, Boerwinkle E.

J Comput Biol. 2009 Dec;16(12):1705-18. doi: 10.1089/cmb.2008.0037.

28.

On primordial sense-antisense coding.

Rodin AS, Rodin SN, Carter CW Jr.

J Mol Evol. 2009 Nov;69(5):555-67. doi: 10.1007/s00239-009-9288-4. Epub 2009 Dec 3.

29.

Systems biology in pharmacogenomic research: the way to personalized prescribing?

Koster ES, Rodin AS, Raaijmakers JA, Maitland-van der Zee AH.

Pharmacogenomics. 2009 Jun;10(6):971-81. doi: 10.2217/pgs.09.38. Review.

PMID:
19530964
30.

One ancestor for two codes viewed from the perspective of two complementary modes of tRNA aminoacylation.

Rodin AS, Szathmáry E, Rodin SN.

Biol Direct. 2009 Jan 27;4:4. doi: 10.1186/1745-6150-4-4.

31.

Genomic association analysis suggests chromosome 12 locus influencing antihypertensive response to thiazide diuretic.

Turner ST, Bailey KR, Fridley BL, Chapman AB, Schwartz GL, Chai HS, Sicotte H, Kocher JP, Rodin AS, Boerwinkle E.

Hypertension. 2008 Aug;52(2):359-65. doi: 10.1161/HYPERTENSIONAHA.107.104273. Epub 2008 Jun 30.

32.
33.

On the origin of the genetic code: signatures of its primordial complementarity in tRNAs and aminoacyl-tRNA synthetases.

Rodin SN, Rodin AS.

Heredity (Edinb). 2008 Apr;100(4):341-55. doi: 10.1038/sj.hdy.6801086. Epub 2008 Mar 5.

34.
36.

Retinal nerve fiber layer changes after LASIK evaluated with optical coherence tomography.

Dementyev DD, Kourenkov VV, Rodin AS, Fadeykina TL, Diaz Martines TE.

J Refract Surg. 2005 Sep-Oct;21(5 Suppl):S623-7.

PMID:
16212292
37.

Repositioning-dependent fate of duplicate genes.

Rodin SN, Parkhomchuk DV, Rodin AS, Holmquist GP, Riggs AD.

DNA Cell Biol. 2005 Sep;24(9):529-42. Review.

PMID:
16153154
38.
39.

Origins and selection of p53 mutations in lung carcinogenesis.

Rodin SN, Rodin AS.

Semin Cancer Biol. 2005 Apr;15(2):103-12. Review.

PMID:
15652455
40.

[Prevention of complications in combined (laser and extrascleral) treatment of retinal detachment].

Bol'shunov AV, Il'ina TS, Privivkova EA, Rodin AS.

Vestn Oftalmol. 2004 Sep-Oct;120(5):5-7. Russian.

PMID:
15529528
41.
42.

On the excess of G --> T transversions in the p53 gene in lung cancer cell lines. Reply to Pfeifer and Hainaut.

Rodin SN, Rodin AS.

Mutat Res. 2004 Jan 12;545(1-2):141-4; author reply 145-6; discussion 147.

PMID:
14698424
43.
44.

Cancerous hyper-mutagenesis in p53 genes is possibly associated with transcriptional bypass of DNA lesions.

Rodin SN, Rodin AS, Juhasz A, Holmquist GP.

Mutat Res. 2002 Dec 29;510(1-2):153-68.

PMID:
12459451
45.

On the origin of p53 G:C --> T:A transversions in lung cancers.

Rodin SN, Rodin AS.

Mutat Res. 2002 Oct 31;508(1-2):1-19.

PMID:
12379456
46.

[Method of laser coagulation in the treatment of retinal breaks and detachment. State of the art].

Bol'shunov AV, Rodin AS.

Vestn Oftalmol. 2001 Mar-Apr;117(2):51-3. Review. Russian. No abstract available.

PMID:
11510173
47.

Human lung cancer and p53: the interplay between mutagenesis and selection.

Rodin SN, Rodin AS.

Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):12244-9. Erratum in: Proc Natl Acad Sci U S A 2001 Feb 13;98(4):2111.

48.
49.

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