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Items: 26

1.

Characterisation of DNA methylation changes in EBF3 and TBC1D16 associated with tumour progression and metastasis in multiple cancer types.

Rodger EJ, Chatterjee A, Stockwell PA, Eccles MR.

Clin Epigenetics. 2019 Aug 5;11(1):114. doi: 10.1186/s13148-019-0710-5.

2.

Targeting DNA Methylation and EZH2 Activity to Overcome Melanoma Resistance to Immunotherapy.

Emran AA, Chatterjee A, Rodger EJ, Tiffen JC, Gallagher SJ, Eccles MR, Hersey P.

Trends Immunol. 2019 Apr;40(4):328-344. doi: 10.1016/j.it.2019.02.004. Epub 2019 Mar 7. Review.

3.

Proteomic Analysis of Liver from Human Lipoprotein(a) Transgenic Mice Shows an Oxidative Stress and Lipid Export Response.

Rodger EJ, Porteous CM, Jones GT, Legge M, Kleffmann T, McCormick SPA.

Biomed Res Int. 2018 Nov 25;2018:4963942. doi: 10.1155/2018/4963942. eCollection 2018.

4.

Genome-Scale Single Nucleotide Resolution Analysis of DNA Methylation in Human Autosomal Dominant Polycystic Kidney Disease.

Bowden SA, Rodger EJ, Bates M, Chatterjee A, Eccles MR, Stayner C.

Am J Nephrol. 2018;48(6):415-424. doi: 10.1159/000494739. Epub 2018 Nov 21.

PMID:
30463078
5.

Marked Global DNA Hypomethylation Is Associated with Constitutive PD-L1 Expression in Melanoma.

Chatterjee A, Rodger EJ, Ahn A, Stockwell PA, Parry M, Motwani J, Gallagher SJ, Shklovskaya E, Tiffen J, Eccles MR, Hersey P.

iScience. 2018 Jun 29;4:312-325. doi: 10.1016/j.isci.2018.05.021. Epub 2018 Jun 28.

6.

A Guide for Designing and Analyzing RNA-Seq Data.

Chatterjee A, Ahn A, Rodger EJ, Stockwell PA, Eccles MR.

Methods Mol Biol. 2018;1783:35-80. doi: 10.1007/978-1-4939-7834-2_3.

PMID:
29767357
7.

Epigenetic drivers of tumourigenesis and cancer metastasis.

Chatterjee A, Rodger EJ, Eccles MR.

Semin Cancer Biol. 2018 Aug;51:149-159. doi: 10.1016/j.semcancer.2017.08.004. Epub 2017 Aug 12. Review.

8.

The epigenomic basis of common diseases.

Rodger EJ, Chatterjee A.

Clin Epigenetics. 2017 Jan 19;9:5. doi: 10.1186/s13148-017-0313-y. eCollection 2017.

9.

Genome-wide methylation sequencing of paired primary and metastatic cell lines identifies common DNA methylation changes and a role for EBF3 as a candidate epigenetic driver of melanoma metastasis.

Chatterjee A, Stockwell PA, Ahn A, Rodger EJ, Leichter AL, Eccles MR.

Oncotarget. 2017 Jan 24;8(4):6085-6101. doi: 10.18632/oncotarget.14042.

10.

Generating Multiple Base-Resolution DNA Methylomes Using Reduced Representation Bisulfite Sequencing.

Chatterjee A, Rodger EJ, Stockwell PA, Le Mée G, Morison IM.

Methods Mol Biol. 2017;1537:279-298.

PMID:
27924600
11.

Tools and Strategies for Analysis of Genome-Wide and Gene-Specific DNA Methylation Patterns.

Chatterjee A, Rodger EJ, Morison IM, Eccles MR, Stockwell PA.

Methods Mol Biol. 2017;1537:249-277. Review.

PMID:
27924599
12.

scan_tcga tools for integrated epigenomic and transcriptomic analysis of tumor subgroups.

Chatterjee A, Stockwell PA, Rodger EJ, Parry MF, Eccles MR.

Epigenomics. 2016 Oct;8(10):1315-1330. Epub 2016 Sep 14.

13.

Sex differences in DNA methylation and expression in zebrafish brain: a test of an extended 'male sex drive' hypothesis.

Chatterjee A, Lagisz M, Rodger EJ, Zhen L, Stockwell PA, Duncan EJ, Horsfield JA, Jeyakani J, Mathavan S, Ozaki Y, Nakagawa S.

Gene. 2016 Sep 30;590(2):307-16. doi: 10.1016/j.gene.2016.05.042. Epub 2016 May 31.

14.

Placental Hypomethylation Is More Pronounced in Genomic Loci Devoid of Retroelements.

Chatterjee A, Macaulay EC, Rodger EJ, Stockwell PA, Parry MF, Roberts HE, Slatter TL, Hung NA, Devenish CJ, Morison IM.

G3 (Bethesda). 2016 Jul 7;6(7):1911-21. doi: 10.1534/g3.116.030379.

15.

Genome-scale DNA methylome and transcriptome profiling of human neutrophils.

Chatterjee A, Stockwell PA, Rodger EJ, Morison IM.

Sci Data. 2016 Mar 15;3:160019. doi: 10.1038/sdata.2016.19.

16.

Genome-wide DNA methylation map of human neutrophils reveals widespread inter-individual epigenetic variation.

Chatterjee A, Stockwell PA, Rodger EJ, Duncan EJ, Parry MF, Weeks RJ, Morison IM.

Sci Rep. 2015 Nov 27;5:17328. doi: 10.1038/srep17328.

17.

5-hydroxymethylcytosine: a potential therapeutic target in cancer.

Rodger EJ, Chatterjee A, Morison IM.

Epigenomics. 2014;6(5):503-14. doi: 10.2217/epi.14.39. Review.

PMID:
25431943
18.

DMAP: differential methylation analysis package for RRBS and WGBS data.

Stockwell PA, Chatterjee A, Rodger EJ, Morison IM.

Bioinformatics. 2014 Jul 1;30(13):1814-22. doi: 10.1093/bioinformatics/btu126. Epub 2014 Mar 7.

PMID:
24608764
19.

Three-Dimensional Molecular Modeling of a Diverse Range of SC Clan Serine Proteases.

Laskar A, Chatterjee A, Chatterjee S, Rodger EJ.

Mol Biol Int. 2012;2012:580965. doi: 10.1155/2012/580965. Epub 2012 Nov 19.

20.

Technical considerations for reduced representation bisulfite sequencing with multiplexed libraries.

Chatterjee A, Rodger EJ, Stockwell PA, Weeks RJ, Morison IM.

J Biomed Biotechnol. 2012;2012:741542. doi: 10.1155/2012/741542. Epub 2012 Oct 10.

21.

Global demethylation in loss of imprinting subtype of Wilms tumor.

Ludgate JL, Le Mée G, Fukuzawa R, Rodger EJ, Weeks RJ, Reeve AE, Morison IM.

Genes Chromosomes Cancer. 2013 Feb;52(2):174-84. doi: 10.1002/gcc.22017. Epub 2012 Oct 17.

PMID:
23074036
22.

Modeling and structural analysis of PA clan serine proteases.

Laskar A, Rodger EJ, Chatterjee A, Mandal C.

BMC Res Notes. 2012 May 24;5:256. doi: 10.1186/1756-0500-5-256.

23.

Comparison of alignment software for genome-wide bisulphite sequence data.

Chatterjee A, Stockwell PA, Rodger EJ, Morison IM.

Nucleic Acids Res. 2012 May;40(10):e79. doi: 10.1093/nar/gks150. Epub 2012 Feb 16.

24.

Proteomic analysis of aortae from human lipoprotein(a) transgenic mice shows an early metabolic response independent of atherosclerosis.

Rodger EJ, Suetani RJ, Jones GT, Kleffmann T, Carne A, Legge M, McCormick SP.

PLoS One. 2012;7(1):e30383. doi: 10.1371/journal.pone.0030383. Epub 2012 Jan 19.

25.

Modeling and structural analysis of evolutionarily diverse S8 family serine proteases.

Laskar A, Rodger EJ, Chatterjee A, Mandal C.

Bioinformation. 2011;7(5):239-45. Epub 2011 Oct 31.

26.

Myelodysplastic syndrome in New Zealand and Australia.

Rodger EJ, Morison IM.

Intern Med J. 2012 Nov;42(11):1235-42. doi: 10.1111/j.1445-5994.2011.02619.x.

PMID:
22032810

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