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Items: 44

1.

Comparative genomics of 10 new Caenorhabditis species.

Stevens L, Félix MA, Beltran T, Braendle C, Caurcel C, Fausett S, Fitch D, Frézal L, Gosse C, Kaur T, Kiontke K, Newton MD, Noble LM, Richaud A, Rockman MV, Sudhaus W, Blaxter M.

Evol Lett. 2019 Apr 2;3(2):217-236. doi: 10.1002/evl3.110. eCollection 2019 Apr.

2.

Decoupled maternal and zygotic genetic effects shape the evolution of development.

Zakas C, Deutscher JM, Kay AD, Rockman MV.

Elife. 2018 Sep 10;7. pii: e37143. doi: 10.7554/eLife.37143.

3.

Polygenicity and Epistasis Underlie Fitness-Proximal Traits in the Caenorhabditis elegans Multiparental Experimental Evolution (CeMEE) Panel.

Noble LM, Chelo I, Guzella T, Afonso B, Riccardi DD, Ammerman P, Dayarian A, Carvalho S, Crist A, Pino-Querido A, Shraiman B, Rockman MV, Teotónio H.

Genetics. 2017 Dec;207(4):1663-1685. doi: 10.1534/genetics.117.300406. Epub 2017 Oct 24.

4.

The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length.

Cook DE, Zdraljevic S, Tanny RE, Seo B, Riccardi DD, Noble LM, Rockman MV, Alkema MJ, Braendle C, Kammenga JE, Wang J, Kruglyak L, Félix MA, Lee J, Andersen EC.

Genetics. 2016 Sep;204(1):371-83. doi: 10.1534/genetics.116.191148. Epub 2016 Jul 22.

5.

Fine-Scale Crossover Rate Variation on the Caenorhabditis elegans X Chromosome.

Bernstein MR, Rockman MV.

G3 (Bethesda). 2016 Jun 1;6(6):1767-76. doi: 10.1534/g3.116.028001.

6.

The Expendables: Natural selection driving reduced gene function (Comment on DOI 10.1002/bies.201500083).

Bernstein MR, Rockman MV.

Bioessays. 2015 Nov;37(11):1153. doi: 10.1002/bies.201500147. No abstract available.

PMID:
26488529
7.

Natural Variation in plep-1 Causes Male-Male Copulatory Behavior in C. elegans.

Noble LM, Chang AS, McNelis D, Kramer M, Yen M, Nicodemus JP, Riccardi DD, Ammerman P, Phillips M, Islam T, Rockman MV.

Curr Biol. 2015 Oct 19;25(20):2730-7. doi: 10.1016/j.cub.2015.09.019. Epub 2015 Oct 8.

8.

Wild worm embryogenesis harbors ubiquitous polygenic modifier variation.

Paaby AB, White AG, Riccardi DD, Gunsalus KC, Piano F, Rockman MV.

Elife. 2015 Aug 22;4. doi: 10.7554/eLife.09178.

9.

Gene-based polymorphisms reveal limited genomic divergence in a species with a heritable life-history dimorphism.

Zakas C, Rockman MV.

Evol Dev. 2015 Jul-Aug;17(4):240-7. doi: 10.1111/ede.12128.

PMID:
26174100
10.

Dimorphic development in Streblospio benedicti: genetic analysis of morphological differences between larval types.

Zakas C, Rockman MV.

Int J Dev Biol. 2014;58(6-8):593-9. doi: 10.1387/ijdb.140088mr.

11.

Cryptic genetic variation: evolution's hidden substrate.

Paaby AB, Rockman MV.

Nat Rev Genet. 2014 Apr;15(4):247-58. doi: 10.1038/nrg3688. Epub 2014 Mar 11. Review.

12.

Multigenic natural variation underlies Caenorhabditis elegans olfactory preference for the bacterial pathogen Serratia marcescens.

Glater EE, Rockman MV, Bargmann CI.

G3 (Bethesda). 2014 Feb 19;4(2):265-76. doi: 10.1534/g3.113.008649.

13.

Crossover heterogeneity in the absence of hotspots in Caenorhabditis elegans.

Kaur T, Rockman MV.

Genetics. 2014 Jan;196(1):137-48. doi: 10.1534/genetics.113.158857. Epub 2013 Oct 30.

14.

Pleiotropy: what do you mean? Reply to Zhang and Wagner.

Paaby AB, Rockman MV.

Trends Genet. 2013 Jul;29(7):384. doi: 10.1016/j.tig.2013.05.003. Epub 2013 Jun 7. No abstract available.

PMID:
23746964
15.

Resistance to germline RNA interference in a Caenorhabditis elegans wild isolate exhibits complexity and nonadditivity.

Pollard DA, Rockman MV.

G3 (Bethesda). 2013 Jun 21;3(6):941-7. doi: 10.1534/g3.113.005785.

16.

Long-range regulatory polymorphisms affecting a GABA receptor constitute a quantitative trait locus (QTL) for social behavior in Caenorhabditis elegans.

Bendesky A, Pitts J, Rockman MV, Chen WC, Tan MW, Kruglyak L, Bargmann CI.

PLoS Genet. 2012;8(12):e1003157. doi: 10.1371/journal.pgen.1003157. Epub 2012 Dec 20.

17.

The many faces of pleiotropy.

Paaby AB, Rockman MV.

Trends Genet. 2013 Feb;29(2):66-73. doi: 10.1016/j.tig.2012.10.010. Epub 2012 Nov 7.

18.

More than the sum of its parts: a complex epistatic network underlies natural variation in thermal preference behavior in Caenorhabditis elegans.

Gaertner BE, Parmenter MD, Rockman MV, Kruglyak L, Phillips PC.

Genetics. 2012 Dec;192(4):1533-42. doi: 10.1534/genetics.112.142877. Epub 2012 Oct 19.

19.

Patterns of nuclear genetic variation in the poecilogonous polychaete Streblospio benedicti.

Rockman MV.

Integr Comp Biol. 2012 Jul;52(1):173-80. doi: 10.1093/icb/ics083. Epub 2012 Jun 1.

PMID:
22659203
20.

The QTN program and the alleles that matter for evolution: all that's gold does not glitter.

Rockman MV.

Evolution. 2012 Jan;66(1):1-17. doi: 10.1111/j.1558-5646.2011.01486.x. Epub 2011 Nov 6.

21.

A phylogeny and molecular barcodes for Caenorhabditis, with numerous new species from rotting fruits.

Kiontke KC, Félix MA, Ailion M, Rockman MV, Braendle C, Pénigault JB, Fitch DH.

BMC Evol Biol. 2011 Nov 21;11:339. doi: 10.1186/1471-2148-11-339.

22.

A novel sperm-delivered toxin causes late-stage embryo lethality and transmission ratio distortion in C. elegans.

Seidel HS, Ailion M, Li J, van Oudenaarden A, Rockman MV, Kruglyak L.

PLoS Biol. 2011 Jul;9(7):e1001115. doi: 10.1371/journal.pbio.1001115. Epub 2011 Jul 26.

23.

Catecholamine receptor polymorphisms affect decision-making in C. elegans.

Bendesky A, Tsunozaki M, Rockman MV, Kruglyak L, Bargmann CI.

Nature. 2011 Apr 21;472(7343):313-8. doi: 10.1038/nature09821. Epub 2011 Mar 16.

24.

Selection at linked sites shapes heritable phenotypic variation in C. elegans.

Rockman MV, Skrovanek SS, Kruglyak L.

Science. 2010 Oct 15;330(6002):372-6. doi: 10.1126/science.1194208.

25.

Multiple Functional Variants in cis Modulate PDYN Expression.

Babbitt CC, Silverman JS, Haygood R, Reininga JM, Rockman MV, Wray GA.

Mol Biol Evol. 2010 Feb;27(2):465-79. doi: 10.1093/molbev/msp276. Epub 2009 Nov 12.

PMID:
19910384
26.

Quantitative mapping of a digenic behavioral trait implicates globin variation in C. elegans sensory behaviors.

McGrath PT, Rockman MV, Zimmer M, Jang H, Macosko EZ, Kruglyak L, Bargmann CI.

Neuron. 2009 Mar 12;61(5):692-9. doi: 10.1016/j.neuron.2009.02.012.

27.

Recombinational landscape and population genomics of Caenorhabditis elegans.

Rockman MV, Kruglyak L.

PLoS Genet. 2009 Mar;5(3):e1000419. doi: 10.1371/journal.pgen.1000419. Epub 2009 Mar 13.

28.

Reverse engineering the genotype-phenotype map with natural genetic variation.

Rockman MV.

Nature. 2008 Dec 11;456(7223):738-44. doi: 10.1038/nature07633. Review.

PMID:
19079051
29.

Molecular basis of the copulatory plug polymorphism in Caenorhabditis elegans.

Palopoli MF, Rockman MV, TinMaung A, Ramsay C, Curwen S, Aduna A, Laurita J, Kruglyak L.

Nature. 2008 Aug 21;454(7207):1019-22. doi: 10.1038/nature07171. Epub 2008 Jul 16.

30.

Tinker where the tinkering's good.

Rockman MV, Stern DL.

Trends Genet. 2008 Jul;24(7):317-9. doi: 10.1016/j.tig.2008.04.003. Epub 2008 May 29.

31.

Breeding designs for recombinant inbred advanced intercross lines.

Rockman MV, Kruglyak L.

Genetics. 2008 Jun;179(2):1069-78. doi: 10.1534/genetics.107.083873. Epub 2008 May 27.

32.

Widespread genetic incompatibility in C. elegans maintained by balancing selection.

Seidel HS, Rockman MV, Kruglyak L.

Science. 2008 Feb 1;319(5863):589-94. doi: 10.1126/science.1151107. Epub 2008 Jan 10.

33.

Ancient polymorphism and functional variation in the primate MHC-DQA1 5' cis-regulatory region.

Loisel DA, Rockman MV, Wray GA, Altmann J, Alberts SC.

Proc Natl Acad Sci U S A. 2006 Oct 31;103(44):16331-6. Epub 2006 Oct 19.

34.

Genetics of global gene expression.

Rockman MV, Kruglyak L.

Nat Rev Genet. 2006 Nov;7(11):862-72. Review.

PMID:
17047685
35.

Ancient and recent positive selection transformed opioid cis-regulation in humans.

Rockman MV, Hahn MW, Soranzo N, Zimprich F, Goldstein DB, Wray GA.

PLoS Biol. 2005 Dec;3(12):e387.

36.

Positive selection on MMP3 regulation has shaped heart disease risk.

Rockman MV, Hahn MW, Soranzo N, Loisel DA, Goldstein DB, Wray GA.

Curr Biol. 2004 Sep 7;14(17):1531-9.

37.
38.
39.

Positive selection on a human-specific transcription factor binding site regulating IL4 expression.

Rockman MV, Hahn MW, Soranzo N, Goldstein DB, Wray GA.

Curr Biol. 2003 Dec 2;13(23):2118-23.

40.

The evolution of transcriptional regulation in eukaryotes.

Wray GA, Hahn MW, Abouheif E, Balhoff JP, Pizer M, Rockman MV, Romano LA.

Mol Biol Evol. 2003 Sep;20(9):1377-419. Epub 2003 May 30. Review.

PMID:
12777501
41.

Idiomatic (gene) expressions.

Rockman MV.

Bioessays. 2003 May;25(5):421-4.

PMID:
12717811
42.

Abundant raw material for cis-regulatory evolution in humans.

Rockman MV, Wray GA.

Mol Biol Evol. 2002 Nov;19(11):1991-2004.

PMID:
12411608
44.

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