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Items: 1 to 50 of 100

1.

Cellular versus acellular matrix devices in the treatment of diabetic foot ulcers: Interim results of a comparative efficacy randomized controlled trial.

Tchanque-Fossuo CN, Dahle SE, Lev-Tov H, West KIM, Li CS, Rocke DM, Isseroff RR.

J Tissue Eng Regen Med. 2019 May 9. doi: 10.1002/term.2884. [Epub ahead of print]

PMID:
31070860
2.

Proteomic manifestations of genetic defects in autosomal recessive congenital ichthyosis.

Karim N, Durbin-Johnson B, Rocke DM, Salemi M, Phinney BS, Naeem M, Rice RH.

J Proteomics. 2019 Jun 15;201:104-109. doi: 10.1016/j.jprot.2019.04.007. Epub 2019 Apr 10.

PMID:
30978464
3.

Comparison of protein expression levels and proteomically-inferred genotypes using human hair from different body sites.

Milan JA, Wu PW, Salemi MR, Durbin-Johnson BP, Rocke DM, Phinney BS, Rice RH, Parker GJ.

Forensic Sci Int Genet. 2019 Jul;41:19-23. doi: 10.1016/j.fsigen.2019.03.009. Epub 2019 Mar 11.

PMID:
30939338
4.

Erratum. Urine Complement Proteins and the Risk of Kidney Disease Progression and Mortality in Type 2 Diabetes. Diabetes Care 2018;41:2361-2369.

Vaisar T, Durbin-Johnson B, Whitlock K, Babenko I, Mehrotra R, Rocke DM, Afkarian M.

Diabetes Care. 2019 Jun;42(6):1155. doi: 10.2337/dc19-er06a. Epub 2019 Apr 1. No abstract available.

5.

Urine Complement Proteins and the Risk of Kidney Disease Progression and Mortality in Type 2 Diabetes.

Vaisar T, Durbin-Johnson B, Whitlock K, Babenko I, Mehrotra R, Rocke DM, Afkarian M.

Diabetes Care. 2018 Nov;41(11):2361-2369. doi: 10.2337/dc18-0699. Epub 2018 Aug 27. Erratum in: Diabetes Care. 2019 Jun;42(6):1155.

PMID:
30150236
6.

Corneocyte proteomics: Applications to skin biology and dermatology.

Rice RH, Durbin-Johnson BP, Mann SM, Salemi M, Urayama S, Rocke DM, Phinney BS, Sundberg JP.

Exp Dermatol. 2018 Aug;27(8):931-938. doi: 10.1111/exd.13756. Review.

PMID:
30033667
7.

A Matter of Time: Faster Percolator Analysis via Efficient SVM Learning for Large-Scale Proteomics.

Halloran JT, Rocke DM.

J Proteome Res. 2018 May 4;17(5):1978-1982. doi: 10.1021/acs.jproteome.7b00767. Epub 2018 Apr 6.

8.

The Beta 2 Adrenergic Receptor Antagonist Timolol Improves Healing of Combined Burn and Radiation Wounds.

Albrecht H, Yang HY, Kiuru M, Maksaereekul S, Durbin-Johnson B, Wong MS, Stevenson TR, Rocke DM, Isseroff RR.

Radiat Res. 2018 Apr;189(4):441-445. doi: 10.1667/RR14884.1. Epub 2018 Jan 26.

9.

Prevalence and risk factors for kidney stones in fibrodysplasia ossificans progressiva.

Gupta RR, Delai PLR, Glaser DL, Rocke DM, Al Mukaddam M, Pignolo RJ, Kaplan FS.

Bone. 2018 Apr;109:120-123. doi: 10.1016/j.bone.2017.12.010. Epub 2017 Dec 11.

PMID:
29241827
10.

Glucose-lowering effect of whey protein depends upon clinical characteristics of patients with type 2 diabetes.

Almario RU, Buchan WM, Rocke DM, Karakas SE.

BMJ Open Diabetes Res Care. 2017 Jul 7;5(1):e000420. doi: 10.1136/bmjdrc-2017-000420. eCollection 2017. Erratum in: BMJ Open Diabetes Res Care. 2017 Sep 26;5(1):e000420corr1.

11.

Proteomic profiling of Pachyonychia congenita plantar callus.

Rice RH, Durbin-Johnson BP, Salemi M, Schwartz ME, Rocke DM, Phinney BS.

J Proteomics. 2017 Aug 8;165:132-137. doi: 10.1016/j.jprot.2017.06.017. Epub 2017 Jun 23.

12.

Joint-specific risk of impaired function in fibrodysplasia ossificans progressiva (FOP).

Pignolo RJ, Durbin-Johnson BP, Rocke DM, Kaplan FS.

Bone. 2018 Apr;109:124-133. doi: 10.1016/j.bone.2017.06.009. Epub 2017 Jun 13.

PMID:
28627475
13.

Proteomic analysis of hair shafts from monozygotic twins: Expression profiles and genetically variant peptides.

Wu PW, Mason KE, Durbin-Johnson BP, Salemi M, Phinney BS, Rocke DM, Parker GJ, Rice RH.

Proteomics. 2017 Jul;17(13-14). doi: 10.1002/pmic.201600462. Epub 2017 Jun 23.

14.

Myasthenia gravis exacerbation after discontinuing mycophenolate: A single-center cohort study.

Dimachkie MM, Abuzinadah AR, Barohn RJ, Oskarsson B, Rocke DM, Dengel K, Richman DP.

Neurology. 2016 Nov 8;87(19):2067-2068. No abstract available.

PMID:
27821567
15.

Best Practices for Biostatistical Consultation and Collaboration in Academic Health Centers.

Perkins SM, Bacchetti P, Davey CS, Lindsell CJ, Mazumdar M, Oster RA, Peduzzi PN, Rocke DM, Rudser KD, Kim M.

Am Stat. 2016;70(2):187-194. Epub 2016 Jun 9.

16.

Demonstration of Protein-Based Human Identification Using the Hair Shaft Proteome.

Parker GJ, Leppert T, Anex DS, Hilmer JK, Matsunami N, Baird L, Stevens J, Parsawar K, Durbin-Johnson BP, Rocke DM, Nelson C, Fairbanks DJ, Wilson AS, Rice RH, Woodward SR, Bothner B, Hart BR, Leppert M.

PLoS One. 2016 Sep 7;11(9):e0160653. doi: 10.1371/journal.pone.0160653. eCollection 2016.

17.

Proteomic Analysis of Loricrin Knockout Mouse Epidermis.

Rice RH, Durbin-Johnson BP, Ishitsuka Y, Salemi M, Phinney BS, Rocke DM, Roop DR.

J Proteome Res. 2016 Aug 5;15(8):2560-6. doi: 10.1021/acs.jproteome.6b00108. Epub 2016 Jul 26.

PMID:
27418529
18.

The Natural History of Flare-Ups in Fibrodysplasia Ossificans Progressiva (FOP): A Comprehensive Global Assessment.

Pignolo RJ, Bedford-Gay C, Liljesthröm M, Durbin-Johnson BP, Shore EM, Rocke DM, Kaplan FS.

J Bone Miner Res. 2016 Mar;31(3):650-6. doi: 10.1002/jbmr.2728. Epub 2015 Nov 14.

19.

Myasthenia gravis exacerbation after discontinuing mycophenolate: A single-center cohort study.

Oskarsson B, Rocke DM, Dengel K, Richman DP.

Neurology. 2016 Mar 22;86(12):1159-63. doi: 10.1212/WNL.0000000000002405. Epub 2016 Feb 5.

20.

The Serum Immunoglobulin G Glycosylation Signature of Gastric Cancer.

Ruhaak LR, Barkauskas DA, Torres J, Cooke CL, Wu LD, Stroble C, Ozcan S, Williams CC, Camorlinga M, Rocke DM, Lebrilla CB, Solnick JV.

EuPA Open Proteom. 2015 Mar 1;6:1-9.

21.

Targeted therapy with MXD3 siRNA, anti-CD22 antibody and nanoparticles for precursor B-cell acute lymphoblastic leukaemia.

Satake N, Duong C, Chen C, Barisone GA, Diaz E, Tuscano J, Rocke DM, Nolta J, Nitin N.

Br J Haematol. 2014 Nov;167(4):487-99. doi: 10.1111/bjh.13066. Epub 2014 Sep 8.

22.

Human hair shaft proteomic profiling: individual differences, site specificity and cuticle analysis.

Laatsch CN, Durbin-Johnson BP, Rocke DM, Mukwana S, Newland AB, Flagler MJ, Davis MG, Eigenheer RA, Phinney BS, Rice RH.

PeerJ. 2014 Aug 5;2:e506. doi: 10.7717/peerj.506. eCollection 2014.

23.

Differential network analyses of Alzheimer's disease identify early events in Alzheimer's disease pathology.

Xia J, Rocke DM, Perry G, Ray M.

Int J Alzheimers Dis. 2014;2014:721453. doi: 10.1155/2014/721453. Epub 2014 Jul 23.

24.

Pharmacokinetic and pharmacodynamic analysis comparing diverse effects of detomidine, medetomidine, and dexmedetomidine in the horse: a population analysis.

Grimsrud KN, Ait-Oudhia S, Durbin-Johnson BP, Rocke DM, Mama KR, Rezende ML, Stanley SD, Jusko WJ.

J Vet Pharmacol Ther. 2015 Feb;38(1):24-34. doi: 10.1111/jvp.12139. Epub 2014 Jul 29.

25.

Transcriptome and metabolome analysis of citrus fruit to elucidate puffing disorder.

Ibáñez AM, Martinelli F, Reagan RL, Uratsu SL, Vo A, Tinoco MA, Phu ML, Chen Y, Rocke DM, Dandekar AM.

Plant Sci. 2014 Mar;217-218:87-98. doi: 10.1016/j.plantsci.2013.12.003. Epub 2013 Dec 14.

PMID:
24467900
26.

Distinguishing ichthyoses by protein profiling.

Rice RH, Bradshaw KM, Durbin-Johnson BP, Rocke DM, Eigenheer RA, Phinney BS, Schmuth M, Gruber R.

PLoS One. 2013 Oct 9;8(10):e75355. doi: 10.1371/journal.pone.0075355. eCollection 2013.

27.

Stability of miRNA in human urine supports its biomarker potential.

Mall C, Rocke DM, Durbin-Johnson B, Weiss RH.

Biomark Med. 2013 Aug;7(4):623-31. doi: 10.2217/bmm.13.44.

28.

Carbon turnover in the water-soluble protein of the adult human lens.

Stewart DN, Lango J, Nambiar KP, Falso MJ, FitzGerald PG, Rocke DM, Hammock BD, Buchholz BA.

Mol Vis. 2013;19:463-75. Epub 2013 Feb 25.

29.

Chicken corneocyte cross-linked proteome.

Rice RH, Winters BR, Durbin-Johnson BP, Rocke DM.

J Proteome Res. 2013 Feb 1;12(2):771-6. doi: 10.1021/pr301036k. Epub 2013 Jan 4.

30.

Differentiating inbred mouse strains from each other and those with single gene mutations using hair proteomics.

Rice RH, Bradshaw KM, Durbin-Johnson BP, Rocke DM, Eigenheer RA, Phinney BS, Sundberg JP.

PLoS One. 2012;7(12):e51956. doi: 10.1371/journal.pone.0051956. Epub 2012 Dec 14.

31.

Genomic characterization of a three-dimensional skin model following exposure to ionizing radiation.

Yunis R, Albrecht H, Kalanetra KM, Wu S, Rocke DM.

J Radiat Res. 2012 Nov 1;53(6):860-75. doi: 10.1093/jrr/rrs063. Epub 2012 Aug 21.

32.

Neurological symptoms in individuals with fibrodysplasia ossificans progressiva.

Kitterman JA, Strober JB, Kan L, Rocke DM, Cali A, Peeper J, Snow J, Delai PL, Morhart R, Pignolo RJ, Shore EM, Kaplan FS.

J Neurol. 2012 Dec;259(12):2636-43. doi: 10.1007/s00415-012-6562-y. Epub 2012 Jun 30.

33.

Comparison of low and high dose ionising radiation using topological analysis of gene coexpression networks.

Ray M, Yunis R, Chen X, Rocke DM.

BMC Genomics. 2012 May 17;13:190. doi: 10.1186/1471-2164-13-190.

34.

Transcriptomic analysis of toxoplasma development reveals many novel functions and structures specific to sporozoites and oocysts.

Fritz HM, Buchholz KR, Chen X, Durbin-Johnson B, Rocke DM, Conrad PA, Boothroyd JC.

PLoS One. 2012;7(2):e29998. doi: 10.1371/journal.pone.0029998. Epub 2012 Feb 13.

35.

Transcriptional response of ex vivo human skin to ionizing radiation: comparison between low- and high-dose effects.

Albrecht H, Durbin-Johnson B, Yunis R, Kalanetra KM, Wu S, Chen R, Stevenson TR, Rocke DM.

Radiat Res. 2012 Jan;177(1):69-83. Epub 2011 Oct 26.

36.

Identification of tissue cyst wall components by transcriptome analysis of in vivo and in vitro Toxoplasma gondii bradyzoites.

Buchholz KR, Fritz HM, Chen X, Durbin-Johnson B, Rocke DM, Ferguson DJ, Conrad PA, Boothroyd JC.

Eukaryot Cell. 2011 Dec;10(12):1637-47. doi: 10.1128/EC.05182-11. Epub 2011 Oct 21.

37.

Impact of public reporting of coronary artery bypass graft surgery performance data on market share, mortality, and patient selection.

Romano PS, Marcin JP, Dai JJ, Yang XD, Kravitz RL, Rocke DM, Dharmar M, Li Z.

Med Care. 2011 Dec;49(12):1118-25. doi: 10.1097/MLR.0b013e3182358c78.

PMID:
22002641
38.

Expression of CD44s and CD44v6 in lung cancer and their correlation with prognostic factors.

Afify AM, Tate S, Durbin-Johnson B, Rocke DM, Konia T.

Int J Biol Markers. 2011 Jan-Mar;26(1):50-7.

PMID:
21279958
39.

A Method to Detect Differential Gene expression in Cross-Species Hybridization Experiments at Gene and Probe Level.

Chen Y, Wu R, Felton J, Rocke DM, Chakicherla A.

Biomed Inform Insights. 2010 Mar 5;2010(3):1-10.

40.

A Method to Detect Differential Gene Expression in Cross-Species Hybridization Experiments at Gene and Probe Level.

Chen Y, Wu R, Felton J, Rocke DM, Chakicherla A.

Biomed Inform Insights. 2010 Mar 5;3:1-10. doi: 10.4137/BII.S3846. eCollection 2010.

41.

Early mortality and cardiorespiratory failure in patients with fibrodysplasia ossificans progressiva.

Kaplan FS, Zasloff MA, Kitterman JA, Shore EM, Hong CC, Rocke DM.

J Bone Joint Surg Am. 2010 Mar;92(3):686-91. doi: 10.2106/JBJS.I.00705.

42.

A general-purpose baseline estimation algorithm for spectroscopic data.

Barkauskas DA, Rocke DM.

Anal Chim Acta. 2010 Jan 11;657(2):191-7. doi: 10.1016/j.aca.2009.10.043.

43.

Neonatal salivary analysis reveals global developmental gene expression changes in the premature infant.

Maron JL, Johnson KL, Rocke DM, Cohen MG, Liley AJ, Bianchi DW.

Clin Chem. 2010 Mar;56(3):409-16. doi: 10.1373/clinchem.2009.136234. Epub 2009 Dec 3.

44.

Clinical-dosimetric analysis of measures of dysphagia including gastrostomy-tube dependence among head and neck cancer patients treated definitively by intensity-modulated radiotherapy with concurrent chemotherapy.

Li B, Li D, Lau DH, Farwell DG, Luu Q, Rocke DM, Newman K, Courquin J, Purdy JA, Chen AM.

Radiat Oncol. 2009 Nov 12;4:52. doi: 10.1186/1748-717X-4-52.

45.

Bridging the gap between systems biology and medicine.

Clermont G, Auffray C, Moreau Y, Rocke DM, Dalevi D, Dubhashi D, Marshall DR, Raasch P, Dehne F, Provero P, Tegner J, Aronow BJ, Langston MA, Benson M.

Genome Med. 2009 Sep 29;1(9):88. doi: 10.1186/gm88.

46.

Gene regulation in parthenocarpic tomato fruit.

Martinelli F, Uratsu SL, Reagan RL, Chen Y, Tricoli D, Fiehn O, Rocke DM, Gasser CS, Dandekar AM.

J Exp Bot. 2009;60(13):3873-90. doi: 10.1093/jxb/erp227. Epub 2009 Aug 21.

47.

Analysis of MALDI FT-ICR mass spectrometry data: a time series approach.

Barkauskas DA, Kronewitter SR, Lebrilla CB, Rocke DM.

Anal Chim Acta. 2009 Aug 26;648(2):207-14. doi: 10.1016/j.aca.2009.06.064. Epub 2009 Jul 5.

48.

Distinguishing mouse strains by proteomic analysis of pelage hair.

Rice RH, Rocke DM, Tsai HS, Silva KA, Lee YJ, Sundberg JP.

J Invest Dermatol. 2009 Sep;129(9):2120-5. doi: 10.1038/jid.2009.52. Epub 2009 Mar 19.

49.

Proteomic analysis of low dose arsenic and ionizing radiation exposure on keratinocytes.

Berglund SR, Santana AR, Li D, Rice RH, Rocke DM, Goldberg Z.

Proteomics. 2009 Apr;9(7):1925-38. doi: 10.1002/pmic.200800118.

50.

IGF-1 does not moderate the time-dependent transcriptional patterns of key homeostatic genes induced by sustained compression of bovine cartilage.

Wheeler CA, Jafarzadeh SR, Rocke DM, Grodzinsky AJ.

Osteoarthritis Cartilage. 2009 Jul;17(7):944-52. doi: 10.1016/j.joca.2009.02.001. Epub 2009 Feb 15.

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