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Dynamic Modeling of a 100-Million-Atom Organelle at the Source of Life.

Rochaix JD.

Cell. 2019 Nov 14;179(5):1012-1014. doi: 10.1016/j.cell.2019.10.023.


mTERF8, a Member of the Mitochondrial Transcription Termination Factor Family, is Involved in the Transcription Termination of Chloroplast Gene psbJ1.

Xiong HB, Wang J, Huang C, Rochaix JD, Lin FM, Zhang JX, Ye LS, Shi XH, Yu QB, Yang ZN.

Plant Physiol. 2019 Nov 4. pii: pp.00906.2019. doi: 10.1104/pp.19.00906. [Epub ahead of print]


COE 1 and GUN1 regulate the adaptation of plants to high light stress.

Guo J, Zhou Y, Li J, Sun Y, Shangguan Y, Zhu Z, Hu Y, Li T, Hu Y, Rochaix JD, Miao Y, Sun X.

Biochem Biophys Res Commun. 2019 Oct 17. pii: S0006-291X(19)32003-0. doi: 10.1016/j.bbrc.2019.10.101. [Epub ahead of print]


PPR Protein BFA2 Is Essential for the Accumulation of the atpH/F Transcript in Chloroplasts.

Zhang L, Zhou W, Che L, Rochaix JD, Lu C, Li W, Peng L.

Front Plant Sci. 2019 Apr 12;10:446. doi: 10.3389/fpls.2019.00446. eCollection 2019.


LHC-like proteins involved in stress responses and biogenesis/repair of the photosynthetic apparatus.

Rochaix JD, Bassi R.

Biochem J. 2019 Feb 14;476(3):581-593. doi: 10.1042/BCJ20180718. Review.


OHP1, OHP2, and HCF244 Form a Transient Functional Complex with the Photosystem II Reaction Center.

Li Y, Liu B, Zhang J, Kong F, Zhang L, Meng H, Li W, Rochaix JD, Li D, Peng L.

Plant Physiol. 2019 Jan;179(1):195-208. doi: 10.1104/pp.18.01231. Epub 2018 Nov 5.


Nucleus-Encoded Protein BFA1 Promotes Efficient Assembly of the Chloroplast ATP Synthase Coupling Factor 1.

Zhang L, Pu H, Duan Z, Li Y, Liu B, Zhang Q, Li W, Rochaix JD, Liu L, Peng L.

Plant Cell. 2018 Aug;30(8):1770-1788. doi: 10.1105/tpc.18.00075. Epub 2018 Jul 16.


Singlet oxygen-triggered chloroplast-to-nucleus retrograde signalling pathways: An emerging perspective.

Dogra V, Rochaix JD, Kim C.

Plant Cell Environ. 2018 Aug;41(8):1727-1738. doi: 10.1111/pce.13332. Epub 2018 Jun 8. Review.


Klaus Apel (1942-2017): a pioneer of photosynthesis research.

Rochaix JD, Kim C, Apel W.

Photosynth Res. 2018 Aug;137(2):153-159. doi: 10.1007/s11120-018-0488-x. Epub 2018 Feb 16.


Specific labeling of mitochondria of Chlamydomonas with cationic helicene fluorophores.

Bauer C, Duwald R, Labrador GM, Pascal S, Moneva Lorente P, Bosson J, Lacour J, Rochaix JD.

Org Biomol Chem. 2018 Feb 7;16(6):919-923. doi: 10.1039/c7ob02906c.


Chloroplast signaling and quality control.

Rochaix JD, Ramundo S.

Essays Biochem. 2018 Apr 13;62(1):13-20. doi: 10.1042/EBC20170048. Print 2018 Apr 13. Review.


The Pyrenoid: An Overlooked Organelle Comes out of Age.

Rochaix JD.

Cell. 2017 Sep 21;171(1):28-29. doi: 10.1016/j.cell.2017.09.012.


A Light Harvesting Complex-Like Protein in Maintenance of Photosynthetic Components in Chlamydomonas.

Zhao L, Cheng D, Huang X, Chen M, Dall'Osto L, Xing J, Gao L, Li L, Wang Y, Bassi R, Peng L, Wang Y, Rochaix JD, Huang F.

Plant Physiol. 2017 Aug;174(4):2419-2433. doi: 10.1104/pp.16.01465. Epub 2017 Jun 21.


Loss of algal Proton Gradient Regulation 5 increases reactive oxygen species scavenging and H2 evolution.

Chen M, Zhang J, Zhao L, Xing J, Peng L, Kuang T, Rochaix JD, Huang F.

J Integr Plant Biol. 2016 Dec;58(12):943-946. doi: 10.1111/jipb.12502. Epub 2016 Nov 23.


Chloroplast retrograde signal regulates flowering.

Feng P, Guo H, Chi W, Chai X, Sun X, Xu X, Ma J, Rochaix JD, Leister D, Wang H, Lu C, Zhang L.

Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):10708-13. doi: 10.1073/pnas.1521599113. Epub 2016 Sep 6.


DEG9, a serine protease, modulates cytokinin and light signaling by regulating the level of ARABIDOPSIS RESPONSE REGULATOR 4.

Chi W, Li J, He B, Chai X, Xu X, Sun X, Jiang J, Feng P, Zuo J, Lin R, Rochaix JD, Zhang L.

Proc Natl Acad Sci U S A. 2016 Jun 21;113(25):E3568-76. doi: 10.1073/pnas.1601724113. Epub 2016 Jun 6.


Activation of the Stt7/STN7 Kinase through Dynamic Interactions with the Cytochrome b6f Complex.

Shapiguzov A, Chai X, Fucile G, Longoni P, Zhang L, Rochaix JD.

Plant Physiol. 2016 May;171(1):82-92. doi: 10.1104/pp.15.01893. Epub 2016 Mar 3. Erratum in: Plant Physiol. 2016 Jun;171(2):1533.


Controlling expression of genes in the unicellular alga Chlamydomonas reinhardtii with a vitamin-repressible riboswitch.

Ramundo S, Rochaix JD.

Methods Enzymol. 2015;550:267-81. doi: 10.1016/bs.mie.2014.10.035. Epub 2014 Dec 26.


Conditional repression of essential chloroplast genes: Evidence for new plastid signaling pathways.

Rochaix JD, Ramundo S.

Biochim Biophys Acta. 2015 Sep;1847(9):986-92. doi: 10.1016/j.bbabio.2014.11.011. Epub 2014 Dec 5. Review.


Chloroplast unfolded protein response, a new plastid stress signaling pathway?

Ramundo S, Rochaix JD.

Plant Signal Behav. 2014;9(10):e972874. doi: 10.4161/15592316.2014.972874.


RHON1 mediates a Rho-like activity for transcription termination in plastids of Arabidopsis thaliana.

Chi W, He B, Manavski N, Mao J, Ji D, Lu C, Rochaix JD, Meurer J, Zhang L.

Plant Cell. 2014 Dec;26(12):4918-32. doi: 10.1105/tpc.114.132118. Epub 2014 Dec 5. Erratum in: Plant Cell. 2016 Dec;28(12 ):3052-3057.


Loss of chloroplast ClpP elicits an autophagy-like response in Chlamydomonas.

Ramundo S, Rochaix JD.

Autophagy. 2014 Sep;10(9):1685-6. doi: 10.4161/auto.29960. Epub 2014 Jul 17. Review.


Conditional Depletion of the Chlamydomonas Chloroplast ClpP Protease Activates Nuclear Genes Involved in Autophagy and Plastid Protein Quality Control.

Ramundo S, Casero D, Mühlhaus T, Hemme D, Sommer F, Crèvecoeur M, Rahire M, Schroda M, Rusch J, Goodenough U, Pellegrini M, Perez-Perez ME, Crespo JL, Schaad O, Civic N, Rochaix JD.

Plant Cell. 2014 May;26(5):2201-2222. Epub 2014 May 30.


Tools for regulated gene expression in the chloroplast of Chlamydomonas.

Rochaix JD, Surzycki R, Ramundo S.

Methods Mol Biol. 2014;1132:413-24. doi: 10.1007/978-1-62703-995-6_28.


Short-term acclimation of the photosynthetic electron transfer chain to changing light: a mathematical model.

Ebenhöh O, Fucile G, Finazzi G, Rochaix JD, Goldschmidt-Clermont M.

Philos Trans R Soc Lond B Biol Sci. 2014 Mar 3;369(1640):20130223. doi: 10.1098/rstb.2013.0223. Print 2014 Apr 19.


Regulation and dynamics of the light-harvesting system.

Rochaix JD.

Annu Rev Plant Biol. 2014;65:287-309. doi: 10.1146/annurev-arplant-050213-040226. Epub 2014 Jan 22. Review.


Repressible chloroplast gene expression in Chlamydomonas: a new tool for the study of the photosynthetic apparatus.

Dinc E, Ramundo S, Croce R, Rochaix JD.

Biochim Biophys Acta. 2014 Sep;1837(9):1548-52. doi: 10.1016/j.bbabio.2013.11.020. Epub 2013 Dec 12.


Separation of membrane protein complexes by native LDS-PAGE.

Arnold J, Shapiguzov A, Fucile G, Rochaix JD, Goldschmidt-Clermont M, Eichacker LA.

Methods Mol Biol. 2014;1072:667-76. doi: 10.1007/978-1-62703-631-3_46.


Plant science. Fine-tuning photosynthesis.

Rochaix JD.

Science. 2013 Oct 4;342(6154):50-1. doi: 10.1126/science.1244943. No abstract available.


Surprising roles for bilins in a green alga.

Rochaix JD.

Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3218-9. doi: 10.1073/pnas.1300399110. Epub 2013 Feb 14. No abstract available.


Redox regulation of thylakoid protein kinases and photosynthetic gene expression.

Rochaix JD.

Antioxid Redox Signal. 2013 Jun 1;18(16):2184-201. doi: 10.1089/ars.2012.5110. Epub 2013 Mar 15. Review.


Repression of essential chloroplast genes reveals new signaling pathways and regulatory feedback loops in chlamydomonas.

Ramundo S, Rahire M, Schaad O, Rochaix JD.

Plant Cell. 2013 Jan;25(1):167-86. doi: 10.1105/tpc.112.103051. Epub 2013 Jan 4.


Protein kinases and phosphatases involved in the acclimation of the photosynthetic apparatus to a changing light environment.

Rochaix JD, Lemeille S, Shapiguzov A, Samol I, Fucile G, Willig A, Goldschmidt-Clermont M.

Philos Trans R Soc Lond B Biol Sci. 2012 Dec 19;367(1608):3466-74. doi: 10.1098/rstb.2012.0064. Review.


Identification of an OPR protein involved in the translation initiation of the PsaB subunit of photosystem I.

Rahire M, Laroche F, Cerutti L, Rochaix JD.

Plant J. 2012 Nov;72(4):652-61. doi: 10.1111/j.1365-313X.2012.05111.x. Epub 2012 Sep 13.


Retrograde signaling and photoprotection in a gun4 mutant of Chlamydomonas reinhardtii.

Formighieri C, Ceol M, Bonente G, Rochaix JD, Bassi R.

Mol Plant. 2012 Nov;5(6):1242-62. doi: 10.1093/mp/sss051. Epub 2012 Jul 5.


Identification of a photosystem II phosphatase involved in light acclimation in Arabidopsis.

Samol I, Shapiguzov A, Ingelsson B, Fucile G, Crèvecoeur M, Vener AV, Rochaix JD, Goldschmidt-Clermont M.

Plant Cell. 2012 Jun;24(6):2596-609. doi: 10.1105/tpc.112.095703. Epub 2012 Jun 15.


The phosphorylation status of the chloroplast protein kinase STN7 of Arabidopsis affects its turnover.

Willig A, Shapiguzov A, Goldschmidt-Clermont M, Rochaix JD.

Plant Physiol. 2011 Dec;157(4):2102-7. doi: 10.1104/pp.111.187328. Epub 2011 Oct 5.


Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).

Reiland S, Finazzi G, Endler A, Willig A, Baerenfaller K, Grossmann J, Gerrits B, Rutishauser D, Gruissem W, Rochaix JD, Baginsky S.

Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):12955-60. doi: 10.1073/pnas.1104734108. Epub 2011 Jul 18.


Reprint of: Regulation of photosynthetic electron transport.

Rochaix JD.

Biochim Biophys Acta. 2011 Aug;1807(8):878-86. doi: 10.1016/j.bbabio.2011.05.009. Epub 2011 May 13.


Assembly of the photosynthetic apparatus.

Rochaix JD.

Plant Physiol. 2011 Apr;155(4):1493-500. doi: 10.1104/pp.110.169839. Epub 2011 Jan 14. Review. No abstract available.


Regulation of photosynthetic electron transport.

Rochaix JD.

Biochim Biophys Acta. 2011 Mar;1807(3):375-83. doi: 10.1016/j.bbabio.2010.11.010. Epub 2010 Nov 29. Review.


Enhanced chloroplast transgene expression in a nuclear mutant of Chlamydomonas.

Michelet L, Lefebvre-Legendre L, Burr SE, Rochaix JD, Goldschmidt-Clermont M.

Plant Biotechnol J. 2011 Jun;9(5):565-74. doi: 10.1111/j.1467-7652.2010.00564.x. Epub 2010 Aug 31.


State transitions at the crossroad of thylakoid signalling pathways.

Lemeille S, Rochaix JD.

Photosynth Res. 2010 Nov;106(1-2):33-46. doi: 10.1007/s11120-010-9538-8. Epub 2010 Mar 9. Review.


The PPH1 phosphatase is specifically involved in LHCII dephosphorylation and state transitions in Arabidopsis.

Shapiguzov A, Ingelsson B, Samol I, Andres C, Kessler F, Rochaix JD, Vener AV, Goldschmidt-Clermont M.

Proc Natl Acad Sci U S A. 2010 Mar 9;107(10):4782-7. doi: 10.1073/pnas.0913810107. Epub 2010 Feb 22.


Stt7-dependent phosphorylation during state transitions in the green alga Chlamydomonas reinhardtii.

Lemeille S, Turkina MV, Vener AV, Rochaix JD.

Mol Cell Proteomics. 2010 Jun;9(6):1281-95. doi: 10.1074/mcp.M000020-MCP201. Epub 2010 Feb 1.


Phosphorylation of photosystem II controls functional macroscopic folding of photosynthetic membranes in Arabidopsis.

Fristedt R, Willig A, Granath P, Crèvecoeur M, Rochaix JD, Vener AV.

Plant Cell. 2009 Dec;21(12):3950-64. doi: 10.1105/tpc.109.069435. Epub 2009 Dec 22.


Biochemical and structural studies of the large Ycf4-photosystem I assembly complex of the green alga Chlamydomonas reinhardtii.

Ozawa S, Nield J, Terao A, Stauber EJ, Hippler M, Koike H, Rochaix JD, Takahashi Y.

Plant Cell. 2009 Aug;21(8):2424-42. doi: 10.1105/tpc.108.063313. Epub 2009 Aug 21.


Factors effecting expression of vaccines in microalgae.

Surzycki R, Greenham K, Kitayama K, Dibal F, Wagner R, Rochaix JD, Ajam T, Surzycki S.

Biologicals. 2009 Jun;37(3):133-8. doi: 10.1016/j.biologicals.2009.02.005.


Analysis of the chloroplast protein kinase Stt7 during state transitions.

Lemeille S, Willig A, Depège-Fargeix N, Delessert C, Bassi R, Rochaix JD.

PLoS Biol. 2009 Mar 3;7(3):e45. doi: 10.1371/journal.pbio.1000045.


Redundant cis-acting determinants of 3' processing and RNA stability in the chloroplast rbcL mRNA of Chlamydomonas.

Goldschmidt-Clermont M, Rahire M, Rochaix JD.

Plant J. 2008 Feb;53(3):566-77. Epub 2007 Nov 7.

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