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Items: 18

1.

Analysis of CD8+ T cell response during the 2013-2016 Ebola epidemic in West Africa.

Sakabe S, Sullivan BM, Hartnett JN, Robles-Sikisaka R, Gangavarapu K, Cubitt B, Ware BC, Kotliar D, Branco LM, Goba A, Momoh M, Sandi JD, Kanneh L, Grant DS, Garry RF, Andersen KG, de la Torre JC, Sabeti PC, Schieffelin JS, Oldstone MBA.

Proc Natl Acad Sci U S A. 2018 Aug 7;115(32):E7578-E7586. doi: 10.1073/pnas.1806200115. Epub 2018 Jul 23.

2.

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

Quick J, Grubaugh ND, Pullan ST, Claro IM, Smith AD, Gangavarapu K, Oliveira G, Robles-Sikisaka R, Rogers TF, Beutler NA, Burton DR, Lewis-Ximenez LL, de Jesus JG, Giovanetti M, Hill SC, Black A, Bedford T, Carroll MW, Nunes M, Alcantara LC Jr, Sabino EC, Baylis SA, Faria NR, Loose M, Simpson JT, Pybus OG, Andersen KG, Loman NJ.

Nat Protoc. 2017 Jun;12(6):1261-1276. doi: 10.1038/nprot.2017.066. Epub 2017 May 24.

3.

Zika virus evolution and spread in the Americas.

Metsky HC, Matranga CB, Wohl S, Schaffner SF, Freije CA, Winnicki SM, West K, Qu J, Baniecki ML, Gladden-Young A, Lin AE, Tomkins-Tinch CH, Ye SH, Park DJ, Luo CY, Barnes KG, Shah RR, Chak B, Barbosa-Lima G, Delatorre E, Vieira YR, Paul LM, Tan AL, Barcellona CM, Porcelli MC, Vasquez C, Cannons AC, Cone MR, Hogan KN, Kopp EW, Anzinger JJ, Garcia KF, Parham LA, Ramírez RMG, Montoya MCM, Rojas DP, Brown CM, Hennigan S, Sabina B, Scotland S, Gangavarapu K, Grubaugh ND, Oliveira G, Robles-Sikisaka R, Rambaut A, Gehrke L, Smole S, Halloran ME, Villar L, Mattar S, Lorenzana I, Cerbino-Neto J, Valim C, Degrave W, Bozza PT, Gnirke A, Andersen KG, Isern S, Michael SF, Bozza FA, Souza TML, Bosch I, Yozwiak NL, MacInnis BL, Sabeti PC.

Nature. 2017 Jun 15;546(7658):411-415. doi: 10.1038/nature22402. Epub 2017 May 24.

4.

Genomic epidemiology reveals multiple introductions of Zika virus into the United States.

Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, Oliveira G, Pronty D, Barcellona CM, Metsky HC, Baniecki ML, Barnes KG, Chak B, Freije CA, Gladden-Young A, Gnirke A, Luo C, MacInnis B, Matranga CB, Park DJ, Qu J, Schaffner SF, Tomkins-Tinch C, West KL, Winnicki SM, Wohl S, Yozwiak NL, Quick J, Fauver JR, Khan K, Brent SE, Reiner RC Jr, Lichtenberger PN, Ricciardi MJ, Bailey VK, Watkins DI, Cone MR, Kopp EW 4th, Hogan KN, Cannons AC, Jean R, Monaghan AJ, Garry RF, Loman NJ, Faria NR, Porcelli MC, Vasquez C, Nagle ER, Cummings DAT, Stanek D, Rambaut A, Sanchez-Lockhart M, Sabeti PC, Gillis LD, Michael SF, Bedford T, Pybus OG, Isern S, Palacios G, Andersen KG.

Nature. 2017 Jun 15;546(7658):401-405. doi: 10.1038/nature22400. Epub 2017 May 24.

5.

Characterization of bacteriophage communities and CRISPR profiles from dental plaque.

Naidu M, Robles-Sikisaka R, Abeles SR, Boehm TK, Pride DT.

BMC Microbiol. 2014 Jun 30;14:175. doi: 10.1186/1471-2180-14-175.

6.

Conservation of streptococcal CRISPRs on human skin and saliva.

Robles-Sikisaka R, Naidu M, Ly M, Salzman J, Abeles SR, Boehm TK, Pride DT.

BMC Microbiol. 2014 Jun 6;14:146. doi: 10.1186/1471-2180-14-146.

7.

Altered oral viral ecology in association with periodontal disease.

Ly M, Abeles SR, Boehm TK, Robles-Sikisaka R, Naidu M, Santiago-Rodriguez T, Pride DT.

MBio. 2014 May 20;5(3):e01133-14. doi: 10.1128/mBio.01133-14.

8.

Biology, genome organization, and evolution of parvoviruses in marine shrimp.

Dhar AK, Robles-Sikisaka R, Saksmerprome V, Lakshman DK.

Adv Virus Res. 2014;89:85-139. doi: 10.1016/B978-0-12-800172-1.00003-3.

PMID:
24751195
9.

Human oral viruses are personal, persistent and gender-consistent.

Abeles SR, Robles-Sikisaka R, Ly M, Lum AG, Salzman J, Boehm TK, Pride DT.

ISME J. 2014 Sep;8(9):1753-67. doi: 10.1038/ismej.2014.31. Epub 2014 Mar 20.

10.

Association between living environment and human oral viral ecology.

Robles-Sikisaka R, Ly M, Boehm T, Naidu M, Salzman J, Pride DT.

ISME J. 2013 Sep;7(9):1710-24. doi: 10.1038/ismej.2013.63. Epub 2013 Apr 18.

11.

Evidence of recombination and positive selection in cetacean papillomaviruses.

Robles-Sikisaka R, Rivera R, Nollens HH, St Leger J, Durden WN, Stolen M, Burchell J, Wellehan JF Jr.

Virology. 2012 Jun 5;427(2):189-97. doi: 10.1016/j.virol.2012.01.039. Epub 2012 Mar 3.

12.

Characterization of a novel papillomavirus species (ZcPV1) from two California sea lions (Zalophus californianus).

Rivera R, Robles-Sikisaka R, Hoffman EM, Stacy BA, Jensen ED, Nollens HH, Wellehan JF Jr.

Vet Microbiol. 2012 Mar 23;155(2-4):257-66. doi: 10.1016/j.vetmic.2011.09.027. Epub 2011 Oct 1.

PMID:
22005176
13.

Genetic signature of rapid IHHNV (infectious hypodermal and hematopoietic necrosis virus) expansion in wild Penaeus shrimp populations.

Robles-Sikisaka R, Bohonak AJ, McClenaghan LR Jr, Dhar AK.

PLoS One. 2010 Jul 26;5(7):e11799. doi: 10.1371/journal.pone.0011799.

14.

Characterization of a Taura syndrome virus isolate originating from the 2004 Texas epizootic in cultured shrimp.

Dhar AK, Lakshman DK, Amundsen K, Robles-Sikisaka R, Kaizer KN, Roy S, Hasson KW, Allnutt FC.

Arch Virol. 2010 Mar;155(3):315-27. doi: 10.1007/s00705-009-0584-5. Epub 2010 Jan 5.

PMID:
20049618
15.

Quantitative detection of hepatitis a virus and enteroviruses near the United States-Mexico border and correlation with levels of fecal indicator bacteria.

Gersberg RM, Rose MA, Robles-Sikisaka R, Dhar AK.

Appl Environ Microbiol. 2006 Dec;72(12):7438-44. Epub 2006 Sep 15.

16.

Genetic variation and immunohistochemical differences among geographic isolates of Taura syndrome virus of penaeid shrimp.

Robles-Sikisaka R, Hasson KW, Garcia DK, Brovont KE, Cleveland KD, Klimpel KR, Dhar AK.

J Gen Virol. 2002 Dec;83(Pt 12):3123-30.

PMID:
12466489
17.
18.

Nonsynonymous substitution in abalone sperm fertilization genes exceeds substitution in introns and mitochondrial DNA.

Metz EC, Robles-Sikisaka R, Vacquier VD.

Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10676-81.

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