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Items: 29

1.

Cervical Microbiome and Response to a Human Papillomavirus Therapeutic Vaccine for Treating High-Grade Cervical Squamous Intraepithelial Lesion.

Ravilla R, Coleman HN, Chow CE, Chan L, Fuhrman BJ, Greenfield WW, Robeson MS, Iverson K, Spencer H 3rd, Nakagawa M.

Integr Cancer Ther. 2019 Jan-Dec;18:1534735419893063. doi: 10.1177/1534735419893063.

2.

Gastrointestinal Tract Dysbiosis Enhances Distal Tumor Progression through Suppression of Leukocyte Trafficking.

Jenkins SV, Robeson MS 2nd, Griffin RJ, Quick CM, Siegel ER, Cannon MJ, Vang KB, Dings RPM.

Cancer Res. 2019 Dec 1;79(23):5999-6009. doi: 10.1158/0008-5472.CAN-18-4108. Epub 2019 Oct 7.

PMID:
31591154
3.

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG.

Nat Biotechnol. 2019 Sep;37(9):1091. doi: 10.1038/s41587-019-0252-6.

PMID:
31399723
4.

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG.

Nat Biotechnol. 2019 Aug;37(8):852-857. doi: 10.1038/s41587-019-0209-9. No abstract available. Erratum in: Nat Biotechnol. 2019 Sep;37(9):1091.

5.

Temporal dynamics of gut microbiota in triclocarban-exposed weaned rats.

Kennedy RC, Fling RR, Robeson MS, Saxton AM, Schneider LG, Darcy JL, Bemis DA, Zhao L, Chen J.

Environ Sci Pollut Res Int. 2018 May;25(15):14743-14751. doi: 10.1007/s11356-018-1627-9. Epub 2018 Mar 13.

PMID:
29536423
6.

Interspecific Plant Interactions Reflected in Soil Bacterial Community Structure and Nitrogen Cycling in Primary Succession.

Knelman JE, Graham EB, Prevéy JS, Robeson MS, Kelly P, Hood E, Schmidt SK.

Front Microbiol. 2018 Feb 6;9:128. doi: 10.3389/fmicb.2018.00128. eCollection 2018.

7.

Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (Sus scrofa).

Robeson MS 2nd, Khanipov K, Golovko G, Wisely SM, White MD, Bodenchuck M, Smyser TJ, Fofanov Y, Fierer N, Piaggio AJ.

Ecol Evol. 2017 Nov 26;8(1):185-196. doi: 10.1002/ece3.3638. eCollection 2018 Jan.

8.

Hypersaline sapropels act as hotspots for microbial dark matter.

Andrei AŞ, Baricz A, Robeson MS 2nd, Păuşan MR, Tămaş T, Chiriac C, Szekeres E, Barbu-Tudoran L, Levei EA, Coman C, Podar M, Banciu HL.

Sci Rep. 2017 Jul 21;7(1):6150. doi: 10.1038/s41598-017-06232-w.

9.

Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.

King AJ, Preheim SP, Bailey KL, Robeson MS 2nd, Roy Chowdhury T, Crable BR, Hurt RA Jr, Mehlhorn T, Lowe KA, Phelps TJ, Palumbo AV, Brandt CC, Brown SD, Podar M, Zhang P, Lancaster WA, Poole F, Watson DB, W Fields M, Chandonia JM, Alm EJ, Zhou J, Adams MW, Hazen TC, Arkin AP, Elias DA.

Environ Sci Technol. 2017 Mar 7;51(5):2879-2889. doi: 10.1021/acs.est.6b04751. Epub 2017 Feb 10.

PMID:
28112946
10.

Temporal Development of Gut Microbiota in Triclocarban Exposed Pregnant and Neonatal Rats.

Kennedy RC, Fling RR, Robeson MS, Saxton AM, Donnell RL, Darcy JL, Bemis DA, Liu J, Zhao L, Chen J.

Sci Rep. 2016 Sep 20;6:33430. doi: 10.1038/srep33430.

11.

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis.

Utturkar SM, Cude WN, Robeson MS Jr, Yang ZK, Klingeman DM, Land ML, Allman SL, Lu TY, Brown SD, Schadt CW, Podar M, Doktycz MJ, Pelletier DA.

Appl Environ Microbiol. 2016 Aug 30;82(18):5698-708. doi: 10.1128/AEM.01285-16. Print 2016 Sep 15.

12.

Seasonal Shifts in Diet and Gut Microbiota of the American Bison (Bison bison).

Bergmann GT, Craine JM, Robeson MS 2nd, Fierer N.

PLoS One. 2015 Nov 12;10(11):e0142409. doi: 10.1371/journal.pone.0142409. eCollection 2015.

13.

Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment.

Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan WA, Robeson MS, Lu TY, Jawdy S, Brown SD, Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, Pelletier DA.

Front Microbiol. 2015 Oct 14;6:1118. doi: 10.3389/fmicb.2015.01118. eCollection 2015.

14.

PanFP: pangenome-based functional profiles for microbial communities.

Jun SR, Robeson MS, Hauser LJ, Schadt CW, Gorin AA.

BMC Res Notes. 2015 Sep 26;8:479. doi: 10.1186/s13104-015-1462-8.

15.

Contrasting taxonomic stratification of microbial communities in two hypersaline meromictic lakes.

Andrei AŞ, Robeson MS 2nd, Baricz A, Coman C, Muntean V, Ionescu A, Etiope G, Alexe M, Sicora CI, Podar M, Banciu HL.

ISME J. 2015 Dec;9(12):2642-56. doi: 10.1038/ismej.2015.60. Epub 2015 May 1.

16.

Structure, mineralogy, and microbial diversity of geothermal spring microbialites associated with a deep oil drilling in Romania.

Coman C, Chiriac CM, Robeson MS, Ionescu C, Dragos N, Barbu-Tudoran L, Andrei AŞ, Banciu HL, Sicora C, Podar M.

Front Microbiol. 2015 Mar 30;6:253. doi: 10.3389/fmicb.2015.00253. eCollection 2015.

17.

Microbial community composition and diversity in Caspian Sea sediments.

Mahmoudi N, Robeson MS 2nd, Castro HF, Fortney JL, Techtmann SM, Joyner DC, Paradis CJ, Pfiffner SM, Hazen TC.

FEMS Microbiol Ecol. 2015 Jan;91(1):1-11. doi: 10.1093/femsec/fiu013. Epub 2014 Dec 5.

18.

Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments.

Hurt RA Jr, Robeson MS 2nd, Shakya M, Moberly JG, Vishnivetskaya TA, Gu B, Elias DA.

PLoS One. 2014 Jul 17;9(7):e102826. doi: 10.1371/journal.pone.0102826. eCollection 2014.

19.

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants.

Bonito G, Reynolds H, Robeson MS 2nd, Nelson J, Hodkinson BP, Tuskan G, Schadt CW, Vilgalys R.

Mol Ecol. 2014 Jul;23(13):3356-70. doi: 10.1111/mec.12821.

PMID:
24894495
20.

Dispersal, niche breadth and population extinction: colonization ratios predict range size in North American dragonflies.

McCauley SJ, Davis CJ, Werner EE, Robeson MS 2nd.

J Anim Ecol. 2014 Jul;83(4):858-65. doi: 10.1111/1365-2656.12181. Epub 2013 Dec 10.

21.

Characterizing microbial communities through space and time.

Gonzalez A, King A, Robeson MS 2nd, Song S, Shade A, Metcalf JL, Knight R.

Curr Opin Biotechnol. 2012 Jun;23(3):431-6. doi: 10.1016/j.copbio.2011.11.017. Epub 2011 Dec 7. Review.

22.

Global distribution of Polaromonas phylotypes--evidence for a highly successful dispersal capacity.

Darcy JL, Lynch RC, King AJ, Robeson MS, Schmidt SK.

PLoS One. 2011;6(8):e23742. doi: 10.1371/journal.pone.0023742. Epub 2011 Aug 29.

23.

Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally.

Robeson MS, King AJ, Freeman KR, Birky CW Jr, Martin AP, Schmidt SK.

Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4406-10. doi: 10.1073/pnas.1012678108. Epub 2011 Feb 22.

24.

Phylogeography of microbial phototrophs in the dry valleys of the high Himalayas and Antarctica.

Schmidt SK, Lynch RC, King AJ, Karki D, Robeson MS, Nagy L, Williams MW, Mitter MS, Freeman KR.

Proc Biol Sci. 2011 Mar 7;278(1706):702-8. doi: 10.1098/rspb.2010.1254. Epub 2010 Sep 8.

25.

Functional shifts in unvegetated, perhumid, recently-deglaciated soils do not correlate with shifts in soil bacterial community composition.

Sattin SR, Cleveland CC, Hood E, Reed SC, King AJ, Schmidt SK, Robeson MS, Ascarrunz N, Nemergut DR.

J Microbiol. 2009 Dec;47(6):673-81. doi: 10.1007/s12275-009-0194-7. Epub 2010 Feb 4.

PMID:
20127458
26.

Environmental DNA sequencing primers for eutardigrades and bdelloid rotifers.

Robeson MS 2nd, Costello EK, Freeman KR, Whiting J, Adams B, Martin AP, Schmidt SK.

BMC Ecol. 2009 Dec 11;9:25. doi: 10.1186/1472-6785-9-25.

27.

Soil CO2 flux and photoautotrophic community composition in high-elevation, 'barren' soil.

Freeman KR, Pescador MY, Reed SC, Costello EK, Robeson MS, Schmidt SK.

Environ Microbiol. 2009 Mar;11(3):674-86. doi: 10.1111/j.1462-2920.2008.01844.x. Epub 2009 Jan 20.

PMID:
19187281
28.

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses.

Jones RT, Robeson MS, Lauber CL, Hamady M, Knight R, Fierer N.

ISME J. 2009 Apr;3(4):442-53. doi: 10.1038/ismej.2008.127. Epub 2009 Jan 8.

29.

Insights and inferences about integron evolution from genomic data.

Nemergut DR, Robeson MS, Kysela RF, Martin AP, Schmidt SK, Knight R.

BMC Genomics. 2008 May 31;9:261. doi: 10.1186/1471-2164-9-261.

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