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Items: 25


CRISPR/Cas9-targeted removal of unwanted sequences from small-RNA sequencing libraries.

Hardigan AA, Roberts BS, Moore DE, Ramaker RC, Jones AL, Myers RM.

Nucleic Acids Res. 2019 Jun 5. pii: gkz425. doi: 10.1093/nar/gkz425. [Epub ahead of print]


A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International Mouse Phenotyping Consortium.

Barupal DK, Zhang Y, Shen T, Fan S, Roberts BS, Fitzgerald P, Wancewicz B, Valdiviez L, Wohlgemuth G, Byram G, Choy YY, Haffner B, Showalter MR, Vaniya A, Bloszies CS, Folz JS, Kind T, Flenniken AM, McKerlie C, Nutter LMJ, Lloyd KC, Fiehn O.

Metabolites. 2019 May 22;9(5). pii: E101. doi: 10.3390/metabo9050101.


Dental Students' Use of Student-Managed Google Docs and Other Technologies in Collaborative Learning.

Roberts BS, Roberts EP, Reynolds S, Stein AF.

J Dent Educ. 2019 Apr;83(4):437-444. doi: 10.21815/JDE.019.053. Epub 2019 Feb 11.


Structure Annotation of All Mass Spectra in Untargeted Metabolomics.

Blaženović I, Kind T, Sa MR, Ji J, Vaniya A, Wancewicz B, Roberts BS, Torbašinović H, Lee T, Mehta SS, Showalter MR, Song H, Kwok J, Jahn D, Kim J, Fiehn O.

Anal Chem. 2019 Feb 5;91(3):2155-2162. doi: 10.1021/acs.analchem.8b04698. Epub 2019 Jan 16.


Coexpression of novel furin-resistant LPL variants with lipase maturation factor 1 enhances LPL secretion and activity.

Wu MJ, Wolska A, Roberts BS, Pearson EM, Gutgsell AR, Remaley AT, Neher SB.

J Lipid Res. 2018 Dec;59(12):2456-2465. doi: 10.1194/jlr.D086793. Epub 2018 Oct 14.


Lipase maturation factor 1 affects redox homeostasis in the endoplasmic reticulum.

Roberts BS, Babilonia-Rosa MA, Broadwell LJ, Wu MJ, Neher SB.

EMBO J. 2018 Oct 1;37(19). pii: e97379. doi: 10.15252/embj.201797379. Epub 2018 Aug 1.


Discovery and Validation of Circulating Biomarkers of Colorectal Adenoma by High-Depth Small RNA Sequencing.

Roberts BS, Hardigan AA, Moore DE, Ramaker RC, Jones AL, Fitz-Gerald MB, Cooper GM, Wilcox CM, Kimberly RP, Myers RM.

Clin Cancer Res. 2018 May 1;24(9):2092-2099. doi: 10.1158/1078-0432.CCR-17-1960. Epub 2018 Feb 28.


Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns.

Kirby MK, Ramaker RC, Roberts BS, Lasseigne BN, Gunther DS, Burwell TC, Davis NS, Gulzar ZG, Absher DM, Cooper SJ, Brooks JD, Myers RM.

BMC Cancer. 2017 Apr 17;17(1):273. doi: 10.1186/s12885-017-3252-2.


aRNApipe: a balanced, efficient and distributed pipeline for processing RNA-seq data in high-performance computing environments.

Alonso A, Lasseigne BN, Williams K, Nielsen J, Ramaker RC, Hardigan AA, Johnston B, Roberts BS, Cooper SJ, Marsal S, Myers RM.

Bioinformatics. 2017 Jun 1;33(11):1727-1729. doi: 10.1093/bioinformatics/btx023.


Genomic regulation of invasion by STAT3 in triple negative breast cancer.

McDaniel JM, Varley KE, Gertz J, Savic DS, Roberts BS, Bailey SK, Shevde LA, Ramaker RC, Lasseigne BN, Kirby MK, Newberry KM, Partridge EC, Jones AL, Boone B, Levy SE, Oliver PG, Sexton KC, Grizzle WE, Forero A, Buchsbaum DJ, Cooper SJ, Myers RM.

Oncotarget. 2017 Jan 31;8(5):8226-8238. doi: 10.18632/oncotarget.14153.


Distinct gene regulatory programs define the inhibitory effects of liver X receptors and PPARG on cancer cell proliferation.

Savic D, Ramaker RC, Roberts BS, Dean EC, Burwell TC, Meadows SK, Cooper SJ, Garabedian MJ, Gertz J, Myers RM.

Genome Med. 2016 Jul 11;8(1):74. doi: 10.1186/s13073-016-0328-6.


USP6 oncogene promotes Wnt signaling by deubiquitylating Frizzleds.

Madan B, Walker MP, Young R, Quick L, Orgel KA, Ryan M, Gupta P, Henrich IC, Ferrer M, Marine S, Roberts BS, Arthur WT, Berndt JD, Oliveira AM, Moon RT, Virshup DM, Chou MM, Major MB.

Proc Natl Acad Sci U S A. 2016 May 24;113(21):E2945-54. doi: 10.1073/pnas.1605691113. Epub 2016 May 9.


Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites.

Savic D, Roberts BS, Carleton JB, Partridge EC, White MA, Cohen BA, Cooper GM, Gertz J, Myers RM.

Genome Res. 2015 Dec;25(12):1791-800. doi: 10.1101/gr.191593.115. Epub 2015 Oct 20.


CETCh-seq: CRISPR epitope tagging ChIP-seq of DNA-binding proteins.

Savic D, Partridge EC, Newberry KM, Smith SB, Meadows SK, Roberts BS, Mackiewicz M, Mendenhall EM, Myers RM.

Genome Res. 2015 Oct;25(10):1581-9. doi: 10.1101/gr.193540.115. Epub 2015 Sep 9.


Blocking of targeted microRNAs from next-generation sequencing libraries.

Roberts BS, Hardigan AA, Kirby MK, Fitz-Gerald MB, Wilcox CM, Kimberly RP, Myers RM.

Nucleic Acids Res. 2015 Dec 2;43(21):e145. doi: 10.1093/nar/gkv724. Epub 2015 Jul 23.


Recurrent read-through fusion transcripts in breast cancer.

Varley KE, Gertz J, Roberts BS, Davis NS, Bowling KM, Kirby MK, Nesmith AS, Oliver PG, Grizzle WE, Forero A, Buchsbaum DJ, LoBuglio AF, Myers RM.

Breast Cancer Res Treat. 2014 Jul;146(2):287-97. doi: 10.1007/s10549-014-3019-2. Epub 2014 Jun 15.


Integrative ChIP-seq/microarray analysis identifies a CTNNB1 target signature enriched in intestinal stem cells and colon cancer.

Watanabe K, Biesinger J, Salmans ML, Roberts BS, Arthur WT, Cleary M, Andersen B, Xie X, Dai X.

PLoS One. 2014 Mar 20;9(3):e92317. doi: 10.1371/journal.pone.0092317. eCollection 2014.


Upper-body strength gains from different modes of resistance training in women who are underweight and women who are obese.

Mayhew JL, Smith AE, Arabas JL, Roberts BS.

J Strength Cond Res. 2010 Oct;24(10):2779-84. doi: 10.1519/JSC.0b013e3181e38233.


A lentivirus-mediated genetic screen identifies dihydrofolate reductase (DHFR) as a modulator of beta-catenin/GSK3 signaling.

Klinghoffer RA, Frazier J, Annis J, Berndt JD, Roberts BS, Arthur WT, Lacson R, Zhang XD, Ferrer M, Moon RT, Cleary MA.

PLoS One. 2009 Sep 3;4(9):e6892. doi: 10.1371/journal.pone.0006892.


Bruton's tyrosine kinase revealed as a negative regulator of Wnt-beta-catenin signaling.

James RG, Biechele TL, Conrad WH, Camp ND, Fass DM, Major MB, Sommer K, Yi X, Roberts BS, Cleary MA, Arthur WT, MacCoss M, Rawlings DJ, Haggarty SJ, Moon RT.

Sci Signal. 2009 May 26;2(72):ra25. doi: 10.1126/scisignal.2000230.


New regulators of Wnt/beta-catenin signaling revealed by integrative molecular screening.

Major MB, Roberts BS, Berndt JD, Marine S, Anastas J, Chung N, Ferrer M, Yi X, Stoick-Cooper CL, von Haller PD, Kategaya L, Chien A, Angers S, MacCoss M, Cleary MA, Arthur WT, Moon RT.

Sci Signal. 2008 Nov 11;1(45):ra12. doi: 10.1126/scisignal.2000037.


The colorectal microRNAome.

Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE.

Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3687-92. Epub 2006 Feb 27.


Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and short-interfering RNAs.

Raymond CK, Roberts BS, Garrett-Engele P, Lim LP, Johnson JM.

RNA. 2005 Nov;11(11):1737-44.


Effect of a FastSkin suit on submaximal freestyle swimming.

Roberts BS, Kamel KS, Hedrick CE, McLean SP, Sharp RL.

Med Sci Sports Exerc. 2003 Mar;35(3):519-24.


Acute hormonal response to sublingual androstenediol intake in young men.

Brown GA, Martini ER, Roberts BS, Vukovich MD, King DS.

J Appl Physiol (1985). 2002 Jan;92(1):142-6.

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