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Items: 11

1.

Qiita: rapid, web-enabled microbiome meta-analysis.

Gonzalez A, Navas-Molina JA, Kosciolek T, McDonald D, Vázquez-Baeza Y, Ackermann G, DeReus J, Janssen S, Swafford AD, Orchanian SB, Sanders JG, Shorenstein J, Holste H, Petrus S, Robbins-Pianka A, Brislawn CJ, Wang M, Rideout JR, Bolyen E, Dillon M, Caporaso JG, Dorrestein PC, Knight R.

Nat Methods. 2018 Oct;15(10):796-798. doi: 10.1038/s41592-018-0141-9. Epub 2018 Oct 1.

2.

American Gut: an Open Platform for Citizen Science Microbiome Research.

McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium , Knight R.

mSystems. 2018 May 15;3(3). pii: e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun.

3.

Bacterial community changes in an industrial algae production system.

Fulbright SP, Robbins-Pianka A, Berg-Lyons D, Knight R, Reardon KF, Chisholm ST.

Algal Res. 2018 Apr;31:147-156. doi: 10.1016/j.algal.2017.09.010. Epub 2018 Feb 21.

4.

Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping.

Amir A, McDonald D, Navas-Molina JA, Debelius J, Morton JT, Hyde E, Robbins-Pianka A, Knight R.

mSystems. 2017 Mar 7;2(2). pii: e00199-16. doi: 10.1128/mSystems.00199-16. eCollection 2017 Mar-Apr.

5.

Multiplex growth rate phenotyping of synthetic mutants in selection to engineer glucose and xylose co-utilization in Escherichia coli.

Groot J, Cepress-Mclean SC, Robbins-Pianka A, Knight R, Gill RT.

Biotechnol Bioeng. 2017 Apr;114(4):885-893. doi: 10.1002/bit.26217. Epub 2016 Dec 15.

PMID:
27861733
6.

Bacteria from diverse habitats colonize and compete in the mouse gut.

Seedorf H, Griffin NW, Ridaura VK, Reyes A, Cheng J, Rey FE, Smith MI, Simon GM, Scheffrahn RH, Woebken D, Spormann AM, Van Treuren W, Ursell LK, Pirrung M, Robbins-Pianka A, Cantarel BL, Lombard V, Henrissat B, Knight R, Gordon JI.

Cell. 2014 Oct 9;159(2):253-66. doi: 10.1016/j.cell.2014.09.008. Epub 2014 Oct 2.

7.

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences.

Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, Chase J, McDonald D, Gonzalez A, Robbins-Pianka A, Clemente JC, Gilbert JA, Huse SM, Zhou HW, Knight R, Caporaso JG.

PeerJ. 2014 Aug 21;2:e545. doi: 10.7717/peerj.545. eCollection 2014.

8.

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill.

Mason OU, Scott NM, Gonzalez A, Robbins-Pianka A, Bælum J, Kimbrel J, Bouskill NJ, Prestat E, Borglin S, Joyner DC, Fortney JL, Jurelevicius D, Stringfellow WT, Alvarez-Cohen L, Hazen TC, Knight R, Gilbert JA, Jansson JK.

ISME J. 2014 Jul;8(7):1464-75. doi: 10.1038/ismej.2013.254. Epub 2014 Jan 23.

9.

Amino termini of many yeast proteins map to downstream start codons.

Fournier CT, Cherny JJ, Truncali K, Robbins-Pianka A, Lin MS, Krizanc D, Weir MP.

J Proteome Res. 2012 Dec 7;11(12):5712-9. doi: 10.1021/pr300538f. Epub 2012 Nov 21.

10.

The adjacent positioning of co-regulated gene pairs is widely conserved across eukaryotes.

Arnone JT, Robbins-Pianka A, Arace JR, Kass-Gergi S, McAlear MA.

BMC Genomics. 2012 Oct 10;13:546. doi: 10.1186/1471-2164-13-546.

11.

The mRNA landscape at yeast translation initiation sites.

Robbins-Pianka A, Rice MD, Weir MP.

Bioinformatics. 2010 Nov 1;26(21):2651-5. doi: 10.1093/bioinformatics/btq509. Epub 2010 Sep 6.

PMID:
20819958

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