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The codon sequences predict protein lifetimes and other parameters of the protein life cycle in the mouse brain.

Mandad S, Rahman RU, Centeno TP, Vidal RO, Wildhagen H, Rammner B, Keihani S, Opazo F, Urban I, Ischebeck T, Kirli K, Benito E, Fischer A, Yousefi RY, Dennerlein S, Rehling P, Feussner I, Urlaub H, Bonn S, Rizzoli SO, Fornasiero EF.

Sci Rep. 2018 Nov 15;8(1):16913. doi: 10.1038/s41598-018-35277-8.


Defective Mitochondrial Cardiolipin Remodeling Dampens HIF-1α Expression in Hypoxia.

Chowdhury A, Aich A, Jain G, Wozny K, Lüchtenborg C, Hartmann M, Bernhard O, Balleiniger M, Alfar EA, Zieseniss A, Toischer K, Guan K, Rizzoli SO, Brügger B, Fischer A, Katschinski DM, Rehling P, Dudek J.

Cell Rep. 2018 Oct 16;25(3):561-570.e6. doi: 10.1016/j.celrep.2018.09.057.


Precisely measured protein lifetimes in the mouse brain reveal differences across tissues and subcellular fractions.

Fornasiero EF, Mandad S, Wildhagen H, Alevra M, Rammner B, Keihani S, Opazo F, Urban I, Ischebeck T, Sakib MS, Fard MK, Kirli K, Centeno TP, Vidal RO, Rahman RU, Benito E, Fischer A, Dennerlein S, Rehling P, Feussner I, Bonn S, Simons M, Urlaub H, Rizzoli SO.

Nat Commun. 2018 Oct 12;9(1):4230. doi: 10.1038/s41467-018-06519-0.


Comparative synaptosome imaging: a semi-quantitative method to obtain copy numbers for synaptic and neuronal proteins.

Richter KN, Wildhagen H, Helm MS, Ußling JE, Schikorski T, Rizzoli SO.

Sci Rep. 2018 Oct 4;8(1):14838. doi: 10.1038/s41598-018-33130-6.


X10 expansion microscopy enables 25-nm resolution on conventional microscopes.

Truckenbrodt S, Maidorn M, Crzan D, Wildhagen H, Kabatas S, Rizzoli SO.

EMBO Rep. 2018 Sep;19(9). pii: e45836. doi: 10.15252/embr.201845836. Epub 2018 Jul 9.


Newly produced synaptic vesicle proteins are preferentially used in synaptic transmission.

Truckenbrodt S, Viplav A, Jähne S, Vogts A, Denker A, Wildhagen H, Fornasiero EF, Rizzoli SO.

EMBO J. 2018 Aug 1;37(15). pii: e98044. doi: 10.15252/embj.201798044. Epub 2018 Jun 27.


WDR1 is a novel EYA3 substrate and its dephosphorylation induces modifications of the cellular actin cytoskeleton.

Mentel M, Ionescu AE, Puscalau-Girtu I, Helm MS, Badea RA, Rizzoli SO, Szedlacsek SE.

Sci Rep. 2018 Feb 13;8(1):2910. doi: 10.1038/s41598-018-21155-w.


Glyoxal as an alternative fixative to formaldehyde in immunostaining and super-resolution microscopy.

Richter KN, Revelo NH, Seitz KJ, Helm MS, Sarkar D, Saleeb RS, D'Este E, Eberle J, Wagner E, Vogl C, Lazaro DF, Richter F, Coy-Vergara J, Coceano G, Boyden ES, Duncan RR, Hell SW, Lauterbach MA, Lehnart SE, Moser T, Outeiro TF, Rehling P, Schwappach B, Testa I, Zapiec B, Rizzoli SO.

EMBO J. 2018 Jan 4;37(1):139-159. doi: 10.15252/embj.201695709. Epub 2017 Nov 16.


Review of combined isotopic and optical nanoscopy.

Richter KN, Rizzoli SO, Jähne S, Vogts A, Lovric J.

Neurophotonics. 2017 Apr;4(2):020901. doi: 10.1117/1.NPh.4.2.020901. Epub 2017 Apr 22. Review.


Correction: ELKS1 localizes the synaptic vesicle priming protein bMunc13-2 to a specific subset of active zones.

Kawabe H, Mitkovski M, Kaeser PS, Hirrlinger J, Opazo F, Nestvogel D, Kalla S, Fejtova A, Verrier SE, Bungers SR, Cooper BH, Varoqueaux F, Wang Y, Nehring RB, Gundelfinger ED, Rosenmund C, Rizzoli SO, Südhof TC, Rhee JS, Brose N.

J Cell Biol. 2017 Apr 3;216(4):1205. doi: 10.1083/jcb.20160608603092017c. Epub 2017 Mar 13. No abstract available.


ELKS1 localizes the synaptic vesicle priming protein bMunc13-2 to a specific subset of active zones.

Kawabe H, Mitkovski M, Kaeser PS, Hirrlinger J, Opazo F, Nestvogel D, Kalla S, Fejtova A, Verrier SE, Bungers SR, Cooper BH, Varoqueaux F, Wang Y, Nehring RB, Gundelfinger ED, Rosenmund C, Rizzoli SO, Südhof TC, Rhee JS, Brose N.

J Cell Biol. 2017 Apr 3;216(4):1143-1161. doi: 10.1083/jcb.201606086. Epub 2017 Mar 6. Erratum in: J Cell Biol. 2017 Apr 3;216(4):1205.


Hypoxia-stimulated membrane trafficking requires T-plastin.

Wottawa M, Naas S, Böttger J, van Belle GJ, Möbius W, Revelo NH, Heidenreich D, von Ahlen M, Zieseniss A, Kröhnert K, Lutz S, Lenz C, Urlaub H, Rizzoli SO, Katschinski DM.

Acta Physiol (Oxf). 2017 Sep;221(1):59-73. doi: 10.1111/apha.12859. Epub 2017 Mar 23.


Tools and limitations to study the molecular composition of synapses by fluorescence microscopy.

Maidorn M, Rizzoli SO, Opazo F.

Biochem J. 2016 Oct 15;473(20):3385-3399. Review.


Editorial: Molecular Nanomachines of the Presynaptic Terminal.

Rizzoli SO, Tabares L.

Front Synaptic Neurosci. 2016 Aug 25;8:27. doi: 10.3389/fnsyn.2016.00027. eCollection 2016. No abstract available.


Revisiting adult neurogenesis and the role of erythropoietin for neuronal and oligodendroglial differentiation in the hippocampus.

Hassouna I, Ott C, Wüstefeld L, Offen N, Neher RA, Mitkovski M, Winkler D, Sperling S, Fries L, Goebbels S, Vreja IC, Hagemeyer N, Dittrich M, Rossetti MF, Kröhnert K, Hannke K, Boretius S, Zeug A, Höschen C, Dandekar T, Dere E, Neher E, Rizzoli SO, Nave KA, Sirén AL, Ehrenreich H.

Mol Psychiatry. 2016 Dec;21(12):1752-1767. doi: 10.1038/mp.2015.212. Epub 2016 Jan 26.


The Membrane Marker mCLING Reveals the Molecular Composition of Trafficking Organelles.

Revelo NH, Rizzoli SO.

Curr Protoc Neurosci. 2016 Jan 4;74:2.25.1-21. doi: 10.1002/0471142301.ns0225s74.


Super-resolution Microscopy of Clickable Amino Acids Reveals the Effects of Fluorescent Protein Tagging on Protein Assemblies.

Vreja IC, Nikić I, Göttfert F, Bates M, Kröhnert K, Outeiro TF, Hell SW, Lemke EA, Rizzoli SO.

ACS Nano. 2015 Nov 24;9(11):11034-41. doi: 10.1021/acsnano.5b04434. Epub 2015 Oct 28.


Disruption of adaptor protein 2μ (AP-2μ) in cochlear hair cells impairs vesicle reloading of synaptic release sites and hearing.

Jung S, Maritzen T, Wichmann C, Jing Z, Neef A, Revelo NH, Al-Moyed H, Meese S, Wojcik SM, Panou I, Bulut H, Schu P, Ficner R, Reisinger E, Rizzoli SO, Neef J, Strenzke N, Haucke V, Moser T.

EMBO J. 2015 Nov 3;34(21):2686-702. doi: 10.15252/embj.201591885. Epub 2015 Oct 7.


A contamination-insensitive probe for imaging specific biomolecules by secondary ion mass spectrometry.

Kabatas S, Vreja IC, Saka SK, Höschen C, Kröhnert K, Opazo F, Rizzoli SO, Diederichsen U.

Chem Commun (Camb). 2015 Aug 28;51(67):13221-4. doi: 10.1039/c5cc03895b.


The structure and function of presynaptic endosomes.

Jähne S, Rizzoli SO, Helm MS.

Exp Cell Res. 2015 Jul 15;335(2):172-9. doi: 10.1016/j.yexcr.2015.04.017. Epub 2015 May 1. Review.


Super-Resolution Microscopy of Cerebrospinal Fluid Biomarkers as a Tool for Alzheimer's Disease Diagnostics.

Zhang WI, Antonios G, Rabano A, Bayer TA, Schneider A, Rizzoli SO.

J Alzheimers Dis. 2015;46(4):1007-20. doi: 10.3233/JAD-150064.


Optical dissection of experience-dependent pre- and postsynaptic plasticity in the Drosophila brain.

Pech U, Revelo NH, Seitz KJ, Rizzoli SO, Fiala A.

Cell Rep. 2015 Mar 31;10(12):2083-95. doi: 10.1016/j.celrep.2015.02.065. Epub 2015 Mar 26.


Secondary-ion mass spectrometry of genetically encoded targets.

Vreja IC, Kabatas S, Saka SK, Kröhnert K, Höschen C, Opazo F, Diederichsen U, Rizzoli SO.

Angew Chem Int Ed Engl. 2015 May 4;54(19):5784-8. doi: 10.1002/anie.201411692. Epub 2015 Mar 17.


Spontaneous vesicle recycling in the synaptic bouton.

Truckenbrodt S, Rizzoli SO.

Front Cell Neurosci. 2014 Dec 8;8:409. doi: 10.3389/fncel.2014.00409. eCollection 2014. Review.


Systematic comparison of the effects of alpha-synuclein mutations on its oligomerization and aggregation.

Lázaro DF, Rodrigues EF, Langohr R, Shahpasandzadeh H, Ribeiro T, Guerreiro P, Gerhardt E, Kröhnert K, Klucken J, Pereira MD, Popova B, Kruse N, Mollenhauer B, Rizzoli SO, Braus GH, Danzer KM, Outeiro TF.

PLoS Genet. 2014 Nov 13;10(11):e1004741. doi: 10.1371/journal.pgen.1004741. eCollection 2014 Nov.


Application of STED microscopy to cell biology questions.

Revelo NH, Rizzoli SO.

Methods Mol Biol. 2015;1251:213-30. doi: 10.1007/978-1-4939-2080-8_12.


Multi-protein assemblies underlie the mesoscale organization of the plasma membrane.

Saka SK, Honigmann A, Eggeling C, Hell SW, Lang T, Rizzoli SO.

Nat Commun. 2014 Jul 25;5:4509. doi: 10.1038/ncomms5509.


Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins.

Wilhelm BG, Mandad S, Truckenbrodt S, Kröhnert K, Schäfer C, Rammner B, Koo SJ, Claßen GA, Krauss M, Haucke V, Urlaub H, Rizzoli SO.

Science. 2014 May 30;344(6187):1023-8. doi: 10.1126/science.1252884.


A new probe for super-resolution imaging of membranes elucidates trafficking pathways.

Revelo NH, Kamin D, Truckenbrodt S, Wong AB, Reuter-Jessen K, Reisinger E, Moser T, Rizzoli SO.

J Cell Biol. 2014 May 26;205(4):591-606. doi: 10.1083/jcb.201402066.


Fluorescent in situ hybridization of synaptic proteins imaged with super-resolution STED microscopy.

Zhang WI, Röhse H, Rizzoli SO, Opazo F.

Microsc Res Tech. 2014 Jul;77(7):517-27. doi: 10.1002/jemt.22367. Epub 2014 Apr 10.


Correlated optical and isotopic nanoscopy.

Saka SK, Vogts A, Kröhnert K, Hillion F, Rizzoli SO, Wessels JT.

Nat Commun. 2014 Apr 10;5:3664. doi: 10.1038/ncomms4664.


Synaptic vesicle recycling: steps and principles.

Rizzoli SO.

EMBO J. 2014 Apr 16;33(8):788-822. doi: 10.1002/embj.201386357. Epub 2014 Mar 3. Review.


FM dye photo-oxidation as a tool for monitoring membrane recycling in inner hair cells.

Kamin D, Revelo NH, Rizzoli SO.

PLoS One. 2014 Feb 5;9(2):e88353. doi: 10.1371/journal.pone.0088353. eCollection 2014.


An RNA alternative to human transferrin: a new tool for targeting human cells.

Wilner SE, Wengerter B, Maier K, de Lourdes Borba Magalhães M, Del Amo DS, Pai S, Opazo F, Rizzoli SO, Yan A, Levy M.

Mol Ther Nucleic Acids. 2012 May 15;1:e21. doi: 10.1038/mtna.2012.14.


RAB-5 and RAB-10 cooperate to regulate neuropeptide release in Caenorhabditis elegans.

Sasidharan N, Sumakovic M, Hannemann M, Hegermann J, Liewald JF, Olendrowitz C, Koenig S, Grant BD, Rizzoli SO, Gottschalk A, Eimer S.

Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18944-9. doi: 10.1073/pnas.1203306109. Epub 2012 Oct 25.


Aptamers as potential tools for super-resolution microscopy.

Opazo F, Levy M, Byrom M, Schäfer C, Geisler C, Groemer TW, Ellington AD, Rizzoli SO.

Nat Methods. 2012 Oct;9(10):938-9. doi: 10.1038/nmeth.2179. No abstract available.


The Aspergillus nidulans MAPK module AnSte11-Ste50-Ste7-Fus3 controls development and secondary metabolism.

Bayram Ö, Bayram ÖS, Ahmed YL, Maruyama J, Valerius O, Rizzoli SO, Ficner R, Irniger S, Braus GH.

PLoS Genet. 2012;8(7):e1002816. doi: 10.1371/journal.pgen.1002816. Epub 2012 Jul 19.


Use-dependent inhibition of synaptic transmission by the secretion of intravesicularly accumulated antipsychotic drugs.

Tischbirek CH, Wenzel EM, Zheng F, Huth T, Amato D, Trapp S, Denker A, Welzel O, Lueke K, Svetlitchny A, Rauh M, Deusser J, Schwab A, Rizzoli SO, Henkel AW, Müller CP, Alzheimer C, Kornhuber J, Groemer TW.

Neuron. 2012 Jun 7;74(5):830-44. doi: 10.1016/j.neuron.2012.04.019.


Super-resolution imaging prompts re-thinking of cell biology mechanisms: selected cases using stimulated emission depletion microscopy.

Saka S, Rizzoli SO.

Bioessays. 2012 May;34(5):386-95. doi: 10.1002/bies.201100080. Epub 2012 Mar 13.


FM dye photoconversion for visualizing synaptic vesicles by electron microscopy.

Hoopmann P, Rizzoli SO, Betz WJ.

Cold Spring Harb Protoc. 2012 Jan 1;2012(1):84-6. doi: 10.1101/pdb.prot067611.


Imaging synaptic vesicle recycling by staining and destaining vesicles with FM dyes.

Hoopmann P, Rizzoli SO, Betz WJ.

Cold Spring Harb Protoc. 2012 Jan 1;2012(1):77-83. doi: 10.1101/pdb.prot067603. Review.


A small pool of vesicles maintains synaptic activity in vivo.

Denker A, Bethani I, Kröhnert K, Körber C, Horstmann H, Wilhelm BG, Barysch SV, Kuner T, Neher E, Rizzoli SO.

Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):17177-82. doi: 10.1073/pnas.1112688108. Epub 2011 Sep 8.


The reserve pool of synaptic vesicles acts as a buffer for proteins involved in synaptic vesicle recycling.

Denker A, Kröhnert K, Bückers J, Neher E, Rizzoli SO.

Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):17183-8. doi: 10.1073/pnas.1112690108. Epub 2011 Sep 8.


Systematic heterogeneity of fractional vesicle pool sizes and release rates of hippocampal synapses.

Welzel O, Henkel AW, Stroebel AM, Jung J, Tischbirek CH, Ebert K, Kornhuber J, Rizzoli SO, Groemer TW.

Biophys J. 2011 Feb 2;100(3):593-601. doi: 10.1016/j.bpj.2010.12.3706.


The same synaptic vesicles drive active and spontaneous release.

Wilhelm BG, Groemer TW, Rizzoli SO.

Nat Neurosci. 2010 Dec;13(12):1454-6. doi: 10.1038/nn.2690.


The fate of synaptic vesicle components upon fusion.

Opazo F, Rizzoli SO.

Commun Integr Biol. 2010 Sep;3(5):427-9. doi: 10.4161/cib.3.5.12132.


Endosomal sorting of readily releasable synaptic vesicles.

Hoopmann P, Punge A, Barysch SV, Westphal V, Bückers J, Opazo F, Bethani I, Lauterbach MA, Hell SW, Rizzoli SO.

Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):19055-60. doi: 10.1073/pnas.1007037107. Epub 2010 Oct 18.


Quantitative analysis of synaptic vesicle Rabs uncovers distinct yet overlapping roles for Rab3a and Rab27b in Ca2+-triggered exocytosis.

Pavlos NJ, Grønborg M, Riedel D, Chua JJ, Boyken J, Kloepper TH, Urlaub H, Rizzoli SO, Jahn R.

J Neurosci. 2010 Oct 6;30(40):13441-53. doi: 10.1523/JNEUROSCI.0907-10.2010.


High- and low-mobility stages in the synaptic vesicle cycle.

Kamin D, Lauterbach MA, Westphal V, Keller J, Schönle A, Hell SW, Rizzoli SO.

Biophys J. 2010 Jul 21;99(2):675-84. doi: 10.1016/j.bpj.2010.04.054.


A fluorescence-based in vitro assay for investigating early endosome dynamics.

Barysch SV, Jahn R, Rizzoli SO.

Nat Protoc. 2010 Jun;5(6):1127-37. doi: 10.1038/nprot.2010.84. Epub 2010 May 27.


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