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Bayesian inference of natural selection from spatio-temporal phenotypic data.

David O, van Frank G, Goldringer I, Rivière P, Delof MT.

Theor Popul Biol. 2019 Dec 5. pii: S0040-5809(19)30196-0. doi: 10.1016/j.tpb.2019.11.007. [Epub ahead of print]


Prognostic Implications of RAS Alterations in Diverse Malignancies and Impact of Targeted Therapies.

Kato S, Okamura R, Sicklick JK, Daniels GA, Hong DS, Goodman A, Weihe E, Lee S, Khalid N, Collier R, Mareboina M, Riviere P, Whitchurch TJ, Fanta PT, Lippman SM, Kurzrock R.

Int J Cancer. 2019 Nov 28. doi: 10.1002/ijc.32813. [Epub ahead of print]


Predicting Persistent Opioid Use, Abuse and Toxicity Among Cancer Survivors.

Vitzthum LK, Riviere P, Sheridan P, Nalawade V, Deka R, Furnish T, Mell LK, Rose B, Wallace M, Murphy JD.

J Natl Cancer Inst. 2019 Nov 22. pii: djz200. doi: 10.1093/jnci/djz200. [Epub ahead of print]


Lactose and Fructo-oligosaccharides Increase Visceral Sensitivity in Mice via Glycation Processes, Increasing Mast Cell Density in Colonic Mucosa.

Kamphuis JBJ, Guiard B, Leveque M, Olier M, Jouanin I, Yvon S, Tondereau V, Rivière P, Guéraud F, Chevolleau S, Noguer-Meireles MH, Martin JF, Debrauwer L, Eutamène H, Theodorou V.

Gastroenterology. 2019 Nov 8. pii: S0016-5085(19)41528-X. doi: 10.1053/j.gastro.2019.10.037. [Epub ahead of print]


Association of Treatment With 5α-Reductase Inhibitors and Prostate Cancer Mortality Among Older Adults.

Kumar A, Nalawade V, Riviere P, Sarkar RR, Parsons JK, Murphy JD, Rose BS.

JAMA Netw Open. 2019 Oct 2;2(10):e1913612. doi: 10.1001/jamanetworkopen.2019.13612. No abstract available.


Tobacco smoking and death from prostate cancer in US veterans.

Riviere P, Kumar A, Luterstein E, Vitzthum LK, Nalawade V, Sarkar RR, Bryant AK, Einck JP, Mundt AJ, Murphy JD, Rose BS.

Prostate Cancer Prostatic Dis. 2019 Oct 17. doi: 10.1038/s41391-019-0178-6. [Epub ahead of print]


Sexual health and fertility for individuals with inflammatory bowel disease.

Leenhardt R, Rivière P, Papazian P, Nion-Larmurier I, Girard G, Laharie D, Marteau P.

World J Gastroenterol. 2019 Sep 28;25(36):5423-5433. doi: 10.3748/wjg.v25.i36.5423. Review.


Therapeutic Drug Monitoring of Biologics During Induction to Prevent Primary Non-Response.

Sparrow MP, Papamichael K, Ward MG, Riviere P, Laharie D, Paul S, Roblin X.

J Crohns Colitis. 2019 Sep 24. pii: jjz162. doi: 10.1093/ecco-jcc/jjz162. [Epub ahead of print]


Pedictors of Perianal Fistula Relapse in Crohn's Disease.

Malian A, Rivière P, Bouchard D, Pigot F, Eléouet-Kaplan M, Favreau-Weltzer C, Poullenot F, Laharie D.

Inflamm Bowel Dis. 2019 Aug 30. pii: izz200. doi: 10.1093/ibd/izz200. [Epub ahead of print]


Spatio-angular fluorescence microscopy II. Paraxial 4f imaging.

Chandler T, Shroff H, Oldenbourg R, Rivière P.

J Opt Soc Am A Opt Image Sci Vis. 2019 Aug 1;36(8):1346-1360. doi: 10.1364/JOSAA.36.001346.


Spatio-angular fluorescence microscopy I. Basic theory.

Chandler T, Shroff H, Oldenbourg R, La Rivière P.

J Opt Soc Am A Opt Image Sci Vis. 2019 Aug 1;36(8):1334-1345. doi: 10.1364/JOSAA.36.001334.


Concise Commentary: Second Line Is Not Second Best-Continuing Validity of the Oxford Criteria in the Management of Acute Severe Ulcerative Colitis.

Rivière P, Laharie D, Marteau P.

Dig Dis Sci. 2019 Sep 5. doi: 10.1007/s10620-019-05788-z. [Epub ahead of print] No abstract available.


A Matched Case-Control Analysis of Clinical Outcomes for Patients With Inflammatory Bowel Disease and Rectal Cancer Treated With Pelvic Radiation Therapy.

Mudgway R, Bryant AK, Heide ES, Riviere P, O'Hare C, Rose BS, Murphy JD, Simpson DR.

Int J Radiat Oncol Biol Phys. 2019 Dec 1;105(5):994-1004. doi: 10.1016/j.ijrobp.2019.08.023. Epub 2019 Aug 25.


Transforming the development and dissemination of cutting-edge microscopy and computation.

Colón-Ramos DA, La Riviere P, Shroff H, Oldenbourg R.

Nat Methods. 2019 Aug;16(8):667-669. doi: 10.1038/s41592-019-0475-y. No abstract available.


Abstracts of Presentations at the Association of Clinical Scientists 139th Meeting Hershey, PA, May 15-18, 2019.

Donaldson K, Buchanich JM, Grigson PS, Deneke E, Donaldson K, Vrana KE, Sacks DB, Kuehn GJ, Cardamone D, Pesce A, Smiley S, Nickley J, Krock K, Thomas R, Wilkerson ML, Farag HA, Challa SR, Tice AM, Wolk DM, Prichard J, Grant ML, Regmi S, Kerbacher B, Quinton LE, Farag HA, Tice AM, Wolk DM, Olson J, Haynes A, Yu E, McCully KS, Assi J, Wong M, Zarrin-Khameh N, Nifong TP, Hawker CD, Carlton GT, Rivera JM, Foulis PR, Zuraw A, Morlote D, Peker D, Reddy V, Harada S, Crutchfield C, Zander D, Barbhuiya MA, Pederson EC, Straub ML, Scott SC, Neibauer TL, Salter WF, Creer MH, Zhu Y, Bornhorst JA, Theobald JP, Algeciras-Schimnich A, Cao L, Knox J, Hardy R, Texas HJ, McGuire MF, Hunter RL, Brown RE, Hicks J, Hicks J, Cai Z, Brown RE, Ali Y, Cheng KC, Katz SR, Ding Y, Vanselow DJ, Yakovlev MA, Lin AY, Clark DP, Vargas P, Xin X, Copper JE, Canfield VA, Ang KC, Wang Y, Xiao X, De Carlo F, van Rossum DB, La Rivière PJ, Newell J, Hossler C, Roche M, Warrick J, Phaeton R, Kesterson J, Donaldson K, Myers C, Barrios R, Mintz P, Robyak K, Hamilton C, McGhee P, Pederson C, Straub M, Scott S, Neibauer T, Salter W, Creer M, Zhu Y, Hamilton C, Robyak K, McGhee P, Pederson C, Straub M, Scott S, Neibauer T, Salter W, Creer M, Zhu Y, Singh N, Morlote D, Vnencak-Jones C, Yemelyanova A, Harada S, Shah M, Moghadamtousi SZ, Lan C, Duose D, Hu P, Esquenazi Y, Luthra R, Ballester LY, Koenig AN, Liu CG, Zhang J, Kalia A, Al-Habib A, Van Arsdall M, Dhingra S, Patel K, Tatevian N.

Ann Clin Lab Sci. 2019 May;49(3):403-416. No abstract available.


Septic shock secondary to an acute necrotizing community-acquired pneumonia with bacteremia due to Pseudomonas aeruginosa.

Riviere P, Patin D, Delaporte E, Mahfoudi H, Lecailtel S, Poher F, Villette P, Duclaux J, Jouault P, Brunin G.

IDCases. 2019 May 16;17:e00563. doi: 10.1016/j.idcr.2019.e00563. eCollection 2019.


Real-World Trends in Intravitreal Injection Practices among American Retina Specialists.

Chaturvedi R, Wannamaker KW, Riviere PJ, Khanani AM, Wykoff CC, Chao DL.

Ophthalmol Retina. 2019 Aug;3(8):656-662. doi: 10.1016/j.oret.2019.03.023. Epub 2019 Apr 4.


Computational 3D histological phenotyping of whole zebrafish by X-ray histotomography.

Ding Y, Vanselow DJ, Yakovlev MA, Katz SR, Lin AY, Clark DP, Vargas P, Xin X, Copper JE, Canfield VA, Ang KC, Wang Y, Xiao X, De Carlo F, van Rossum DB, La Riviere P, Cheng KC.

Elife. 2019 May 7;8. pii: e44898. doi: 10.7554/eLife.44898.


Neurocognitive impairment is associated with erectile dysfunction in cirrhotic patients.

Philonenko S, Rivière P, Mallet M, Poullenot F, Tripon S, Munteanu M, Boukherrouf R, Sultanik P, Roupret M, Thabut D, Rudler M.

Dig Liver Dis. 2019 Jun;51(6):850-855. doi: 10.1016/j.dld.2019.03.030. Epub 2019 Apr 25.


Discovery of Potent, Selective, and Short-Acting Peptidic V2 Receptor Agonists.

Wiśniewski K, Qi S, Kraus J, Ly B, Srinivasan K, Tariga H, Croston G, La E, Wiśniewska H, Ortiz C, Laporte R, Rivière PJ, Neyer G, Hargrove DM, Schteingart CD.

J Med Chem. 2019 May 23;62(10):4991-5005. doi: 10.1021/acs.jmedchem.9b00132. Epub 2019 May 7.


Stroke and thromboembolic events in men with prostate cancer treated with definitive radiation therapy with or without androgen deprivation therapy.

Deka R, Simpson DR, Panizzon MS, Hauger RL, Riviere P, Nalawade V, McKay R, Murphy JD, Rose BS.

Prostate Cancer Prostatic Dis. 2019 Dec;22(4):600-608. doi: 10.1038/s41391-019-0150-5. Epub 2019 Apr 15.


Submesoscale ocean fronts act as biological hotspot for southern elephant seal.

Siegelman L, O'Toole M, Flexas M, Rivière P, Klein P.

Sci Rep. 2019 Apr 3;9(1):5588. doi: 10.1038/s41598-019-42117-w.



Rivière P, Zerbib F.

Rev Prat. 2018 Mar;68(3):e99-e102. French. No abstract available.


Claims-Based Approach to Predict Cause-Specific Survival in Men With Prostate Cancer.

Riviere P, Tokeshi C, Hou J, Nalawade V, Sarkar R, Paravati AJ, Schiaffino M, Rose B, Xu R, Murphy JD.

JCO Clin Cancer Inform. 2019 Mar;3:1-7. doi: 10.1200/CCI.18.00111.


Special Section Guest Editorial: Artificial Intelligence in Medical Imaging.

Krupinski EA, Kinahan P, Riviere P.

J Med Imaging (Bellingham). 2019 Jan;6(1):011001. doi: 10.1117/1.JMI.6.1.011001. Epub 2018 Dec 22.


Vedolizumab in Refractory Microscopic Colitis: An International Case Series.

Rivière P, Münch A, Michetti P, Chande N, de Hertogh G, Schoeters P, Ferrante M, Vermeire S, Van Assche G.

J Crohns Colitis. 2019 Mar 26;13(3):337-340. doi: 10.1093/ecco-jcc/jjy169.


No Change in Determining Crohn's Disease Recurrence or Need for Endoscopic or Surgical Intervention With Modification of the Rutgeerts' Scoring System.

Rivière P, Vermeire S, Irles-Depe M, Van Assche G, Rutgeerts P, de Buck van Overstraeten A, Denost Q, Wolthuis A, D'Hoore A, Laharie D, Ferrante M.

Clin Gastroenterol Hepatol. 2019 Jul;17(8):1643-1645. doi: 10.1016/j.cgh.2018.09.047. Epub 2018 Oct 4.


Health and Nutrition Studies Related to Cereal Biodiversity: A Participatory Multi-Actor Literature Review Approach.

Sofi F, Dinu M, Pagliai G, Cei L, Sacchi G, Benedettelli S, Stefani G, Gagliardi E, Tosi P, Bocci R, Bussi B, de Santis G, Rodriguez Y Hurtado I, de Kochko P, Riviere P, Carrascosa-García M, Martínez I.

Nutrients. 2018 Sep 1;10(9). pii: E1207. doi: 10.3390/nu10091207. Review.


Severe endoscopic lesions are not associated with more infliximab fecal loss in acute severe ulcerative colitis.

Poullenot F, Nivet D, Paul S, Riviere P, Roblin X, Laharie D.

Dig Liver Dis. 2018 Oct;50(10):1100-1103. doi: 10.1016/j.dld.2018.07.002. Epub 2018 Jul 10.


Nanoscale metal-organic frameworks enhance radiotherapy to potentiate checkpoint blockade immunotherapy.

Ni K, Lan G, Chan C, Quigley B, Lu K, Aung T, Guo N, La Riviere P, Weichselbaum RR, Lin W.

Nat Commun. 2018 Jun 15;9(1):2351. doi: 10.1038/s41467-018-04703-w.


Proactive Therapeutic Drug Monitoring of TNF Antagonists in Inflammatory Bowel Disease.

Roblin X, Riviere P, Flamant M, Veyrard P, Poullenot F, Paul S, Laharie D.

Inflamm Bowel Dis. 2018 May 3. doi: 10.1093/ibd/izy069. [Epub ahead of print]


[Result of treatment of urinary lithiasis for professional aptitude].

Julien C, Laroche J, Deledalle FX, Brocq FX, Fournier R, Rivière P, Lechevallier E, Savoie PH.

Prog Urol. 2018 May;28(6):329-335. doi: 10.1016/j.purol.2018.03.003. Epub 2018 Apr 26. French.


Malnutrition After Bariatric Surgery Requiring Artificial Nutrition Supplies.

Loddo C, Poullenot F, Rivière P, Pupier E, Monsaingeon-Henry M, Gronnier C, Collet D, Gatta-Cherifi B.

Obes Surg. 2018 Jun;28(6):1803-1805. doi: 10.1007/s11695-018-3207-y. No abstract available.


Editorial: weighing the global risk of cancer with thiopurines in inflammatory bowel disease.

Laharie D, Riviere P.

Aliment Pharmacol Ther. 2018 Mar;47(5):689-690. doi: 10.1111/apt.14475. No abstract available.


An early chondrichthyan and the evolutionary assembly of a shark body plan.

Coates MI, Finarelli JA, Sansom IJ, Andreev PS, Criswell KE, Tietjen K, Rivers ML, La Riviere PJ.

Proc Biol Sci. 2018 Jan 10;285(1870). pii: 20172418. doi: 10.1098/rspb.2017.2418.


Single-fluorophore orientation determination with multiview polarized illumination: modeling and microscope design.

Chandler T, Mehta S, Shroff H, Oldenbourg R, La Rivière PJ.

Opt Express. 2017 Dec 11;25(25):31309-31325. doi: 10.1364/OE.25.031309.


The Mutational Landscape of Gastrointestinal Malignancies as Reflected by Circulating Tumor DNA.

Riviere P, Fanta PT, Ikeda S, Baumgartner J, Heestand GM, Kurzrock R.

Mol Cancer Ther. 2018 Jan;17(1):297-305. doi: 10.1158/1535-7163.MCT-17-0360. Epub 2017 Nov 13.


Reflective imaging improves spatiotemporal resolution and collection efficiency in light sheet microscopy.

Wu Y, Kumar A, Smith C, Ardiel E, Chandris P, Christensen R, Rey-Suarez I, Guo M, Vishwasrao HD, Chen J, Tang J, Upadhyaya A, La Riviere PJ, Shroff H.

Nat Commun. 2017 Nov 13;8(1):1452. doi: 10.1038/s41467-017-01250-8.


Improved deconvolution of very weak confocal signals.

Day KJ, La Rivière PJ, Chandler T, Bindokas VP, Ferrier NJ, Glick BS.

Version 2. F1000Res. 2017 Jun 6 [revised 2017 Jan 1];6:787. doi: 10.12688/f1000research.11773.2. eCollection 2017.


Frequency of and Factors Associated With Sexual Dysfunction in Patients With Inflammatory Bowel Disease.

Rivière P, Zallot C, Desobry P, Sabaté JM, Vergniol J, Zerbib F, Peyrin-Biroulet L, Laharie D, Poullenot F.

J Crohns Colitis. 2017 Oct 27;11(11):1347-1352. doi: 10.1093/ecco-jcc/jjx100.


Gastroesophageal reflux in infants, children and adults. Hiatal hernia

Rivière P, Zerbib F.

Rev Prat. 2017 Oct;67(8):e367-e374. French. No abstract available.


Management of Postoperative Crohn's Disease: Missing Pieces of the Puzzle.

Rivière P, Ferrante M.

J Crohns Colitis. 2017 Oct 27;11(11):1291-1292. doi: 10.1093/ecco-jcc/jjx114. No abstract available.


Quality of Sex Life in Patients with Inflammatory Bowel Disease: The Gastroenterologists' Perspective.

Rivière P, Poullenot F, Zerbib F, Laharie D.

Inflamm Bowel Dis. 2017 Oct;23(10):E51-E52. doi: 10.1097/MIB.0000000000001256. No abstract available.


Sensitivity evaluation and selective plane imaging geometry for x-ray-induced luminescence imaging.

Quigley BP, Smith CD, Cheng SH, Souris JS, Pelizzari CA, Chen CT, Lo LW, Reft CS, Wiersma RD, La Riviere PJ.

Med Phys. 2017 Oct;44(10):5367-5377. doi: 10.1002/mp.12470. Epub 2017 Sep 4.


Variable temporal sampling and tube current modulation for myocardial blood flow estimation from dose-reduced dynamic computed tomography.

Modgil D, Bindschadler MD, Alessio AM, La Rivière PJ.

J Med Imaging (Bellingham). 2017 Apr;4(2):026002. doi: 10.1117/1.JMI.4.2.026002. Epub 2017 May 13.


[Work-related suicide].

Rivière P, Fouet T.

Soins. 2017 Apr;62(814):42-43. doi: 10.1016/j.soin.2017.02.009. French.


Assessment of vectorial total variation penalties on realistic dual-energy CT data.

Rigie DS, Sanchez AA, La Rivière PJ.

Phys Med Biol. 2017 Apr 21;62(8):3284-3298. doi: 10.1088/1361-6560/aa6392.


Dissection of molecular assembly dynamics by tracking orientation and position of single molecules in live cells.

Mehta SB, McQuilken M, La Riviere PJ, Occhipinti P, Verma A, Oldenbourg R, Gladfelter AS, Tani T.

Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):E6352-E6361. Epub 2016 Sep 27.


Simultaneous multiview capture and fusion improves spatial resolution in wide-field and light-sheet microscopy.

Wu Y, Chandris P, Winter PW, Kim EY, Jaumouillé V, Kumar A, Guo M, Leung JM, Smith C, Rey-Suarez I, Liu H, Waterman CM, Ramamurthi KS, La Riviere PJ, Shroff H.

Optica. 2016 Aug 20;3(8):897-910. Epub 2016 Aug 11.


Enhancing High-Order Harmonic Generation in Light Molecules by Using Chirped Pulses.

Lara-Astiaso M, Silva RE, Gubaydullin A, Rivière P, Meier C, Martín F.

Phys Rev Lett. 2016 Aug 26;117(9):093003. doi: 10.1103/PhysRevLett.117.093003. Epub 2016 Aug 24.


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