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Partial correlation analysis of transcriptomes helps detangle the growth and defense network in spruce.

Porth I, White R, Jaquish B, Ritland K.

New Phytol. 2018 Jun;218(4):1349-1359. doi: 10.1111/nph.15075. Epub 2018 Mar 5.


The challenge of separating signatures of local adaptation from those of isolation by distance and colonization history: The case of two white pines.

Nadeau S, Meirmans PG, Aitken SN, Ritland K, Isabel N.

Ecol Evol. 2016 Oct 27;6(24):8649-8664. doi: 10.1002/ece3.2550. eCollection 2016 Dec.


Estimating Relatedness in the Presence of Null Alleles.

Huang K, Ritland K, Dunn DW, Qi X, Guo S, Li B.

Genetics. 2016 Jan;202(1):247-60. doi: 10.1534/genetics.114.163956. Epub 2015 Oct 23.


Contrasting patterns of genetic diversity across the ranges of Pinus monticola and P. strobus: a comparison between eastern and western North American postglacial colonization histories.

Nadeau S, Godbout J, Lamothe M, Gros-Louis MC, Isabel N, Ritland K.

Am J Bot. 2015 Aug;102(8):1342-55. doi: 10.3732/ajb.1500160. Epub 2015 Aug 12.


Reduced Genetic Diversity and Increased Dispersal in Guigna (Leopardus guigna) in Chilean Fragmented Landscapes.

Napolitano C, Díaz D, Sanderson J, Johnson WE, Ritland K, Ritland CE, Poulin E.

J Hered. 2015;106 Suppl 1:522-36. doi: 10.1093/jhered/esv025.


Estimating pairwise relatedness between individuals with different levels of ploidy.

Huang K, Ritland K, Guo S, Dunn DW, Chen D, Ren Y, Qi X, Zhang P, He G, Li B.

Mol Ecol Resour. 2015 Jul;15(4):772-84. doi: 10.1111/1755-0998.12351. Epub 2014 Dec 23.


Insights into conifer giga-genomes.

De La Torre AR, Birol I, Bousquet J, Ingvarsson PK, Jansson S, Jones SJ, Keeling CI, MacKay J, Nilsson O, Ritland K, Street N, Yanchuk A, Zerbe P, Bohlmann J.

Plant Physiol. 2014 Dec;166(4):1724-32. doi: 10.1104/pp.114.248708. Epub 2014 Oct 27. Review.


Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.

Stival Sena J, Giguère I, Boyle B, Rigault P, Birol I, Zuccolo A, Ritland K, Ritland C, Bohlmann J, Jones S, Bousquet J, Mackay J.

BMC Plant Biol. 2014 Apr 16;14:95. doi: 10.1186/1471-2229-14-95.


A pairwise relatedness estimator for polyploids.

Huang K, Ritland K, Guo S, Shattuck M, Li B.

Mol Ecol Resour. 2014 Jul;14(4):734-44. doi: 10.1111/1755-0998.12217. Epub 2014 Jan 27.


Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.

Birol I, Raymond A, Jackman SD, Pleasance S, Coope R, Taylor GA, Yuen MM, Keeling CI, Brand D, Vandervalk BP, Kirk H, Pandoh P, Moore RA, Zhao Y, Mungall AJ, Jaquish B, Yanchuk A, Ritland C, Boyle B, Bousquet J, Ritland K, Mackay J, Bohlmann J, Jones SJ.

Bioinformatics. 2013 Jun 15;29(12):1492-7. doi: 10.1093/bioinformatics/btt178. Epub 2013 May 22.


The Norway spruce genome sequence and conifer genome evolution.

Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S.

Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22.


Lineage-specific mapping of quantitative trait loci.

Chen C, Ritland K.

Heredity (Edinb). 2013 Aug;111(2):106-13. doi: 10.1038/hdy.2013.24. Epub 2013 Apr 24.


Genetical genomics identifies the genetic architecture for growth and weevil resistance in spruce.

Porth I, White R, Jaquish B, Alfaro R, Ritland C, Ritland K.

PLoS One. 2012;7(9):e44397. doi: 10.1371/journal.pone.0044397. Epub 2012 Sep 4.


Long-distance gene flow and adaptation of forest trees to rapid climate change.

Kremer A, Ronce O, Robledo-Arnuncio JJ, Guillaume F, Bohrer G, Nathan R, Bridle JR, Gomulkiewicz R, Klein EK, Ritland K, Kuparinen A, Gerber S, Schueler S.

Ecol Lett. 2012 Apr;15(4):378-92. doi: 10.1111/j.1461-0248.2012.01746.x. Epub 2012 Feb 28. Review.


Population genetics of the white-phased "Spirit" black bear of British Columbia.

Hedrick PW, Ritland K.

Evolution. 2012 Feb;66(2):305-13. doi: 10.1111/j.1558-5646.2011.01463.x. Epub 2011 Oct 5.


Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms.

Buschiazzo E, Ritland C, Bohlmann J, Ritland K.

BMC Evol Biol. 2012 Jan 20;12:8. doi: 10.1186/1471-2148-12-8.


Defense mechanisms against herbivory in Picea: sequence evolution and expression regulation of gene family members in the phenylpropanoid pathway.

Porth I, Hamberger B, White R, Ritland K.

BMC Genomics. 2011 Dec 16;12:608. doi: 10.1186/1471-2164-12-608.


Estimating selfing rates from reconstructed pedigrees using multilocus genotype data.

Wang J, El-Kassaby YA, Ritland K.

Mol Ecol. 2012 Jan;21(1):100-16. doi: 10.1111/j.1365-294X.2011.05373.x. Epub 2011 Nov 22.


Evolutionary potential in the wild: more than meets the eye.

Ritland K.

Mol Ecol. 2011 Sep;20(17):3494-5. doi: 10.1111/j.1365-294X.2011.05224.x.


Global transcriptome analysis of constitutive resistance to the white pine weevil in spruce.

Verne S, Jaquish B, White R, Ritland C, Ritland K.

Genome Biol Evol. 2011;3:851-67. doi: 10.1093/gbe/evr069. Epub 2011 Aug 17.


Fine-scale comparisons of genetic variability in seed families of asexually and sexually reproducing Crataegus (hawthorn; Rosaceae).

Lo EY, Stefanovic S, Ritland K, Dickinson TA.

Am J Bot. 2010 Jun;97(6):1014-24. doi: 10.3732/ajb.0900091.


QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments.

Pelgas B, Bousquet J, Meirmans PG, Ritland K, Isabel N.

BMC Genomics. 2011 Mar 10;12:145. doi: 10.1186/1471-2164-12-145.


Aging in a long-lived clonal tree.

Ally D, Ritland K, Otto SP.

PLoS Biol. 2010 Aug 17;8(8). pii: e1000454. doi: 10.1371/journal.pbio.1000454.


Postglacial history of a widespread conifer produces inverse clines in selective neutrality tests.

Holliday JA, Yuen M, Ritland K, Aitken SN.

Mol Ecol. 2010 Sep;19(18):3857-64. doi: 10.1111/j.1365-294X.2010.04767.x.


Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis).

Holliday JA, Ritland K, Aitken SN.

New Phytol. 2010 Oct;188(2):501-14. doi: 10.1111/j.1469-8137.2010.03380.x. Epub 2010 Jul 21.


Targeted isolation, sequence assembly and characterization of two white spruce (Picea glauca) BAC clones for terpenoid synthase and cytochrome P450 genes involved in conifer defence reveal insights into a conifer genome.

Hamberger B, Hall D, Yuen M, Oddy C, Hamberger B, Keeling CI, Ritland C, Ritland K, Bohlmann J.

BMC Plant Biol. 2009 Aug 6;9:106. doi: 10.1186/1471-2229-9-106.


The correlation of evolutionary rate with pathway position in plant terpenoid biosynthesis.

Ramsay H, Rieseberg LH, Ritland K.

Mol Biol Evol. 2009 May;26(5):1045-53. doi: 10.1093/molbev/msp021. Epub 2009 Feb 2.


Can clone size serve as a proxy for clone age? An exploration using microsatellite divergence in Populus tremuloides.

Ally D, Ritland K, Otto SP.

Mol Ecol. 2008 Nov;17(22):4897-911. doi: 10.1111/j.1365-294X.2008.03962.x. Erratum in: Mol Ecol. 2010 Sep;19(18):4096-7.


Quantitative iTRAQ proteome and comparative transcriptome analysis of elicitor-induced Norway spruce (Picea abies) cells reveals elements of calcium signaling in the early conifer defense response.

Lippert DN, Ralph SG, Phillips M, White R, Smith D, Hardie D, Gershenzon J, Ritland K, Borchers CH, Bohlmann J.

Proteomics. 2009 Jan;9(2):350-67. doi: 10.1002/pmic.200800252.


A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis).

Ralph SG, Chun HJ, Kolosova N, Cooper D, Oddy C, Ritland CE, Kirkpatrick R, Moore R, Barber S, Holt RA, Jones SJ, Marra MA, Douglas CJ, Ritland K, Bohlmann J.

BMC Genomics. 2008 Oct 14;9:484. doi: 10.1186/1471-2164-9-484.


Estimating heritability of gene expression using parent-offspring regression with 2-channel microarrays.

Albouyeh R, Ritland K.

J Hered. 2009 Jan-Feb;100(1):114-8. doi: 10.1093/jhered/esn081. Epub 2008 Oct 3.


Three-gene identity coefficients demonstrate that clonal reproduction promotes inbreeding and spatial relatedness in yellow-cedar, Callitropsis nootkatensis.

Thompson SL, Bérubé Y, Bruneau A, Ritland K.

Evolution. 2008 Oct;62(10):2570-9. doi: 10.1111/j.1558-5646.2008.00470.x. Epub 2008 Aug 25.


Inbreeding in Japanese quail estimated by pedigree and microsatellite analyses.

Kim SH, Cheng KM, Ritland C, Ritland K, Silversides FG.

J Hered. 2007 Jul-Aug;98(4):378-81. Epub 2007 Jun 29.


A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.

Kelleher CT, Chiu R, Shin H, Bosdet IE, Krzywinski MI, Fjell CD, Wilkin J, Yin T, DiFazio SP, Ali J, Asano JK, Chan S, Cloutier A, Girn N, Leach S, Lee D, Mathewson CA, Olson T, O'connor K, Prabhu AL, Smailus DE, Stott JM, Tsai M, Wye NH, Yang GS, Zhuang J, Holt RA, Putnam NH, Vrebalov J, Giovannoni JJ, Grimwood J, Schmutz J, Rokhsar D, Jones SJ, Marra MA, Tuskan GA, Bohlmann J, Ellis BE, Ritland K, Douglas CJ, Schein JE.

Plant J. 2007 Jun;50(6):1063-78. Epub 2007 May 3.


Microarray gene expression profiling of developmental transitions in Sitka spruce (Picea sitchensis) apical shoots.

Friedmann M, Ralph SG, Aeschliman D, Zhuang J, Ritland K, Ellis BE, Bohlmann J, Douglas CJ.

J Exp Bot. 2007;58(3):593-614. Epub 2007 Jan 13.


Conifer defense against insects: proteome analysis of Sitka spruce (Picea sitchensis) bark induced by mechanical wounding or feeding by white pine weevils (Pissodes strobi).

Lippert D, Chowrira S, Ralph SG, Zhuang J, Aeschliman D, Ritland C, Ritland K, Bohlmann J.

Proteomics. 2007 Jan;7(2):248-70.


The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).

Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D.

Science. 2006 Sep 15;313(5793):1596-604.


Conifer defence against insects: microarray gene expression profiling of Sitka spruce (Picea sitchensis) induced by mechanical wounding or feeding by spruce budworms (Choristoneura occidentalis) or white pine weevils (Pissodes strobi) reveals large-scale changes of the host transcriptome.

Ralph SG, Yueh H, Friedmann M, Aeschliman D, Zeznik JA, Nelson CC, Butterfield YS, Kirkpatrick R, Liu J, Jones SJ, Marra MA, Douglas CJ, Ritland K, Bohlmann J.

Plant Cell Environ. 2006 Aug;29(8):1545-70.


Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences in poplar.

Ralph S, Oddy C, Cooper D, Yueh H, Jancsik S, Kolosova N, Philippe RN, Aeschliman D, White R, Huber D, Ritland CE, Benoit F, Rigby T, Nantel A, Butterfield YS, Kirkpatrick R, Chun E, Liu J, Palmquist D, Wynhoven B, Stott J, Yang G, Barber S, Holt RA, Siddiqui A, Jones SJ, Marra MA, Ellis BE, Douglas CJ, Ritland K, Bohlmann J.

Mol Ecol. 2006 Apr;15(5):1275-97.


Multilocus estimation of pairwise relatedness with dominant markers.

Ritland K.

Mol Ecol. 2005 Sep;14(10):3157-65.


Global transcript profiling of primary stems from Arabidopsis thaliana identifies candidate genes for missing links in lignin biosynthesis and transcriptional regulators of fiber differentiation.

Ehlting J, Mattheus N, Aeschliman DS, Li E, Hamberger B, Cullis IF, Zhuang J, Kaneda M, Mansfield SD, Samuels L, Ritland K, Ellis BE, Bohlmann J, Douglas CJ.

Plant J. 2005 Jun;42(5):618-40.


Estimating heritabilities and genetic correlations with marker-based methods: an experimental test in Mimulus guttatus.

van Kleunen M, Ritland K.

J Hered. 2005 Jul-Aug;96(4):368-75. Epub 2005 Mar 10.


Proteome analysis of early somatic embryogenesis in Picea glauca.

Lippert D, Zhuang J, Ralph S, Ellis DE, Gilbert M, Olafson R, Ritland K, Ellis B, Douglas CJ, Bohlmann J.

Proteomics. 2005 Feb;5(2):461-73.


Robust simple sequence repeat markers for spruce (Picea spp.) from expressed sequence tags.

Rungis D, Bérubé Y, Zhang J, Ralph S, Ritland CE, Ellis BE, Douglas C, Bohlmann J, Ritland K.

Theor Appl Genet. 2004 Oct;109(6):1283-94.


Fine-scale estimation of outcrossing in western redcedar with microsatellite assay of bulked DNA.

O'Connell LM, Russell J, Ritland K.

Heredity (Edinb). 2004 Nov;93(5):443-9.


Joining genetic linkage maps using a joint likelihood function.

Hu XS, Goodwillie C, Ritland KM.

Theor Appl Genet. 2004 Sep;109(5):996-1004.


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