Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 33

1.

Computational Analysis of HLA-presentation of Non-synonymous Recipient Mismatches Indicates Effect on the Risk of Chronic Graft-vs.-Host Disease After Allogeneic HSCT.

Ritari J, Hyvärinen K, Koskela S, Niittyvuopio R, Nihtinen A, Salmenniemi U, Putkonen M, Volin L, Kwan T, Pastinen T, Itälä-Remes M, Partanen J.

Front Immunol. 2019 Jul 16;10:1625. doi: 10.3389/fimmu.2019.01625. eCollection 2019.

2.

Extended HLA Haplotypes and Their Impact on DPB1 Matching of Unrelated Hematologic Stem Cell Transplant Donors.

Linjama T, Räther C, Ritari J, Peräsaari J, Eberhard HP, Korhonen M, Koskela S.

Biol Blood Marrow Transplant. 2019 Jul 12. pii: S1083-8791(19)30440-9. doi: 10.1016/j.bbmt.2019.07.008. [Epub ahead of print]

3.

IL-10 polymorphisms +434T/C, +504G/T, and -2849C/T may predispose to tubulointersititial nephritis and uveitis in pediatric population.

Rytkönen S, Ritari J, Peräsaari J, Saarela V, Nuutinen M, Jahnukainen T.

PLoS One. 2019 Feb 19;14(2):e0211915. doi: 10.1371/journal.pone.0211915. eCollection 2019.

4.

Increased MHC Matching by C4 Gene Compatibility in Unrelated Donor Hematopoietic Stem Cell Transplantation.

Clancy J, Ritari J, Lobier M, Niittyvuopio R, Salmenniemi U, Putkonen M, Itälä-Remes M, Partanen J, Koskela S.

Biol Blood Marrow Transplant. 2019 May;25(5):891-898. doi: 10.1016/j.bbmt.2018.12.759. Epub 2018 Dec 25.

PMID:
30592985
5.

Romboutsia hominis sp. nov., the first human gut-derived representative of the genus Romboutsia, isolated from ileostoma effluent.

Gerritsen J, Umanets A, Staneva I, Hornung B, Ritari J, Paulin L, Rijkers GT, de Vos WM, Smidt H.

Int J Syst Evol Microbiol. 2018 Nov;68(11):3479-3486. doi: 10.1099/ijsem.0.003012. Epub 2018 Sep 18.

PMID:
30226461
6.

Genomic prediction of relapse in recipients of allogeneic haematopoietic stem cell transplantation.

Ritari J, Hyvärinen K, Koskela S, Itälä-Remes M, Niittyvuopio R, Nihtinen A, Salmenniemi U, Putkonen M, Volin L, Kwan T, Pastinen T, Partanen J.

Leukemia. 2019 Jan;33(1):240-248. doi: 10.1038/s41375-018-0229-3. Epub 2018 Aug 8.

7.

Hidden genomic MHC disparity between HLA-matched sibling pairs in hematopoietic stem cell transplantation.

Koskela S, Ritari J, Hyvärinen K, Kwan T, Niittyvuopio R, Itälä-Remes M, Pastinen T, Partanen J.

Sci Rep. 2018 Mar 29;8(1):5396. doi: 10.1038/s41598-018-23682-y.

8.

Genetic polymorphism related to monocyte-macrophage function is associated with graft-versus-host disease.

Hyvärinen K, Ritari J, Koskela S, Niittyvuopio R, Nihtinen A, Volin L, Gallardo D, Partanen J.

Sci Rep. 2017 Nov 15;7(1):15666. doi: 10.1038/s41598-017-15915-3.

9.

Complete Genome Sequence of Eubacterium hallii Strain L2-7.

Shetty SA, Ritari J, Paulin L, Smidt H, De Vos WM.

Genome Announc. 2017 Oct 26;5(43). pii: e01167-17. doi: 10.1128/genomeA.01167-17.

10.

Feasibility of Metatranscriptome Analysis from Infant Gut Microbiota: Adaptation to Solid Foods Results in Increased Activity of Firmicutes at Six Months.

Hugenholtz F, Ritari J, Nylund L, Davids M, Satokari R, de Vos WM.

Int J Microbiol. 2017;2017:9547063. doi: 10.1155/2017/9547063. Epub 2017 Aug 24.

11.

Correction: Genotypic and phenotypic diversity of Lactobacillus rhamnosus clinical isolates, their comparison with strain GG and their recognition by complement system.

Nissilä E, Douillard FP, Ritari J, Paulin L, Järvinen HM, Rasinkangas P, Haapasalo K, Meri S, Jarva H, de Vos WM.

PLoS One. 2017 Jul 10;12(7):e0181292. doi: 10.1371/journal.pone.0181292. eCollection 2017.

12.

Genotypic and phenotypic diversity of Lactobacillus rhamnosus clinical isolates, their comparison with strain GG and their recognition by complement system.

Nissilä E, Douillard FP, Ritari J, Paulin L, Järvinen HM, Rasinkangas P, Haapasalo K, Meri S, Jarva H, de Vos WM.

PLoS One. 2017 May 11;12(5):e0176739. doi: 10.1371/journal.pone.0176739. eCollection 2017. Erratum in: PLoS One. 2017 Jul 10;12 (7):e0181292.

13.

Complete Genome Sequence of Akkermansia glycaniphila Strain PytT, a Mucin-Degrading Specialist of the Reticulated Python Gut.

Ouwerkerk JP, Koehorst JJ, Schaap PJ, Ritari J, Paulin L, Belzer C, de Vos WM.

Genome Announc. 2017 Jan 5;5(1). pii: e01098-16. doi: 10.1128/genomeA.01098-16.

14.

An Inducible Operon Is Involved in Inulin Utilization in Lactobacillus plantarum Strains, as Revealed by Comparative Proteogenomics and Metabolic Profiling.

Buntin N, Hongpattarakere T, Ritari J, Douillard FP, Paulin L, Boeren S, Shetty SA, de Vos WM.

Appl Environ Microbiol. 2016 Dec 30;83(2). pii: e02402-16. doi: 10.1128/AEM.02402-16. Print 2017 Jan 15.

15.

Comparative genomics and physiology of the butyrate-producing bacterium Intestinimonas butyriciproducens.

Bui TP, Shetty SA, Lagkouvardos I, Ritari J, Chamlagain B, Douillard FP, Paulin L, Piironen V, Clavel T, Plugge CM, de Vos WM.

Environ Microbiol Rep. 2016 Dec;8(6):1024-1037. doi: 10.1111/1758-2229.12483. Epub 2016 Nov 9.

PMID:
27717172
16.

Lactobacillus oligofermentans glucose, ribose and xylose transcriptomes show higher similarity between glucose and xylose catabolism-induced responses in the early exponential growth phase.

Andreevskaya M, Johansson P, Jääskeläinen E, Rämö T, Ritari J, Paulin L, Björkroth J, Auvinen P.

BMC Genomics. 2016 Aug 3;17:539. doi: 10.1186/s12864-016-2840-x.

17.

The Variable Regions of Lactobacillus rhamnosus Genomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires.

Ceapa C, Davids M, Ritari J, Lambert J, Wels M, Douillard FP, Smokvina T, de Vos WM, Knol J, Kleerebezem M.

Genome Biol Evol. 2016 Jul 2;8(6):1889-905. doi: 10.1093/gbe/evw123.

18.

Polymorphisms, Chromosomal Rearrangements, and Mutator Phenotype Development during Experimental Evolution of Lactobacillus rhamnosus GG.

Douillard FP, Ribbera A, Xiao K, Ritari J, Rasinkangas P, Paulin L, Palva A, Hao Y, de Vos WM.

Appl Environ Microbiol. 2016 Jun 13;82(13):3783-92. doi: 10.1128/AEM.00255-16. Print 2016 Jul 1.

19.

Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults.

Kolmeder CA, Salojärvi J, Ritari J, de Been M, Raes J, Falony G, Vieira-Silva S, Kekkonen RA, Corthals GL, Palva A, Salonen A, de Vos WM.

PLoS One. 2016 Apr 12;11(4):e0153294. doi: 10.1371/journal.pone.0153294. eCollection 2016.

20.

Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database.

Ritari J, Salojärvi J, Lahti L, de Vos WM.

BMC Genomics. 2015 Dec 12;16:1056. doi: 10.1186/s12864-015-2265-y.

21.

Production of butyrate from lysine and the Amadori product fructoselysine by a human gut commensal.

Bui TP, Ritari J, Boeren S, de Waard P, Plugge CM, de Vos WM.

Nat Commun. 2015 Dec 1;6:10062. doi: 10.1038/ncomms10062.

22.

Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera.

Sun Z, Harris HM, McCann A, Guo C, Argimón S, Zhang W, Yang X, Jeffery IB, Cooney JC, Kagawa TF, Liu W, Song Y, Salvetti E, Wrobel A, Rasinkangas P, Parkhill J, Rea MC, O'Sullivan O, Ritari J, Douillard FP, Paul Ross R, Yang R, Briner AE, Felis GE, de Vos WM, Barrangou R, Klaenhammer TR, Caufield PW, Cui Y, Zhang H, O'Toole PW.

Nat Commun. 2015 Sep 29;6:8322. doi: 10.1038/ncomms9322.

23.

Colonic metaproteomic signatures of active bacteria and the host in obesity.

Kolmeder CA, Ritari J, Verdam FJ, Muth T, Keskitalo S, Varjosalo M, Fuentes S, Greve JW, Buurman WA, Reichl U, Rapp E, Martens L, Palva A, Salonen A, Rensen SS, de Vos WM.

Proteomics. 2015 Oct;15(20):3544-52. doi: 10.1002/pmic.201500049. Epub 2015 Sep 11.

PMID:
26255997
24.

Effects of bowel cleansing on the intestinal microbiota.

Jalanka J, Salonen A, Salojärvi J, Ritari J, Immonen O, Marciani L, Gowland P, Hoad C, Garsed K, Lam C, Palva A, Spiller RC, de Vos WM.

Gut. 2015 Oct;64(10):1562-8. doi: 10.1136/gutjnl-2014-307240. Epub 2014 Dec 19.

PMID:
25527456
25.

Genomic characterization of non-mucus-adherent derivatives of Lactobacillus rhamnosus GG reveals genes affecting pilus biogenesis.

Rasinkangas P, Reunanen J, Douillard FP, Ritari J, Uotinen V, Palva A, de Vos WM.

Appl Environ Microbiol. 2014 Nov;80(22):7001-9. doi: 10.1128/AEM.02006-14. Epub 2014 Sep 5.

26.

Comparative genomic and functional analysis of 100 Lactobacillus rhamnosus strains and their comparison with strain GG.

Douillard FP, Ribbera A, Kant R, Pietilä TE, Järvinen HM, Messing M, Randazzo CL, Paulin L, Laine P, Ritari J, Caggia C, Lähteinen T, Brouns SJ, Satokari R, von Ossowski I, Reunanen J, Palva A, de Vos WM.

PLoS Genet. 2013;9(8):e1003683. doi: 10.1371/journal.pgen.1003683. Epub 2013 Aug 15.

27.

Identification and validation of human papillomavirus encoded microRNAs.

Qian K, Pietilä T, Rönty M, Michon F, Frilander MJ, Ritari J, Tarkkanen J, Paulín L, Auvinen P, Auvinen E.

PLoS One. 2013 Jul 30;8(7):e70202. doi: 10.1371/journal.pone.0070202. Print 2013.

28.

Comparative genome analysis of Lactobacillus casei strains isolated from Actimel and Yakult products reveals marked similarities and points to a common origin.

Douillard FP, Kant R, Ritari J, Paulin L, Palva A, de Vos WM.

Microb Biotechnol. 2013 Sep;6(5):576-87. doi: 10.1111/1751-7915.12062. Epub 2013 Jul 1. Erratum in: Microb Biotechnol. 2014 Jan;7(1):85.

29.

Molecular analysis of meso- and thermophilic microbiota associated with anaerobic biowaste degradation.

Ritari J, Koskinen K, Hultman J, Kurola JM, Kymäläinen M, Romantschuk M, Paulin L, Auvinen P.

BMC Microbiol. 2012 Jun 22;12:121. doi: 10.1186/1471-2180-12-121.

30.

Detection of human papillomaviruses by polymerase chain reaction and ligation reaction on universal microarray.

Ritari J, Hultman J, Fingerroos R, Tarkkanen J, Pullat J, Paulin L, Kivi N, Auvinen P, Auvinen E.

PLoS One. 2012;7(3):e34211. doi: 10.1371/journal.pone.0034211. Epub 2012 Mar 23.

31.

Application of hybridization control probe to increase accuracy on ligation detection or minisequencing diagnostic microarrays.

Ritari J, Paulin L, Hultman J, Auvinen P.

BMC Res Notes. 2009 Dec 14;2:249. doi: 10.1186/1756-0500-2-249.

32.

Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein.

Kankainen M, Paulin L, Tynkkynen S, von Ossowski I, Reunanen J, Partanen P, Satokari R, Vesterlund S, Hendrickx AP, Lebeer S, De Keersmaecker SC, Vanderleyden J, Hämäläinen T, Laukkanen S, Salovuori N, Ritari J, Alatalo E, Korpela R, Mattila-Sandholm T, Lassig A, Hatakka K, Kinnunen KT, Karjalainen H, Saxelin M, Laakso K, Surakka A, Palva A, Salusjärvi T, Auvinen P, de Vos WM.

Proc Natl Acad Sci U S A. 2009 Oct 6;106(40):17193-8. doi: 10.1073/pnas.0908876106. Epub 2009 Sep 17.

33.

Universal ligation-detection-reaction microarray applied for compost microbes.

Hultman J, Ritari J, Romantschuk M, Paulin L, Auvinen P.

BMC Microbiol. 2008 Dec 30;8:237. doi: 10.1186/1471-2180-8-237.

Supplemental Content

Loading ...
Support Center