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Items: 33

1.

Normalized Quantitative PCR Measurements as Predictors for Ethene Formation at Sites Impacted with Chlorinated Ethenes.

Clark K, Taggart DM, Baldwin BR, Ritalahti KM, Murdoch RW, Hatt JK, Löffler FE.

Environ Sci Technol. 2018 Nov 20;52(22):13410-13420. doi: 10.1021/acs.est.8b04373. Epub 2018 Nov 8.

PMID:
30365883
2.

Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi.

Löffler FE, Yan J, Ritalahti KM, Adrian L, Edwards EA, Konstantinidis KT, Müller JA, Fullerton H, Zinder SH, Spormann AM.

Int J Syst Evol Microbiol. 2015 Jun;65(Pt 6):2015. doi: 10.1099/ijs.0.000308. No abstract available.

PMID:
26184667
3.

Denitrification versus respiratory ammonification: environmental controls of two competing dissimilatory NO3(-)/NO2(-) reduction pathways in Shewanella loihica strain PV-4.

Yoon S, Cruz-García C, Sanford R, Ritalahti KM, Löffler FE.

ISME J. 2015 May;9(5):1093-104. doi: 10.1038/ismej.2014.201. Epub 2014 Oct 31.

4.

Sphaerochaeta multiformis sp. nov., an anaerobic, psychrophilic bacterium isolated from subseafloor sediment, and emended description of the genus Sphaerochaeta.

Miyazaki M, Sakai S, Ritalahti KM, Saito Y, Yamanaka Y, Saito Y, Tame A, Uematsu K, Löffler FE, Takai K, Imachi H.

Int J Syst Evol Microbiol. 2014 Dec;64(Pt 12):4147-54. doi: 10.1099/ijs.0.068148-0. Epub 2014 Sep 23.

PMID:
25249566
5.

Detecting nitrous oxide reductase (NosZ) genes in soil metagenomes: method development and implications for the nitrogen cycle.

Orellana LH, Rodriguez-R LM, Higgins S, Chee-Sanford JC, Sanford RA, Ritalahti KM, Löffler FE, Konstantinidis KT.

MBio. 2014 Jun 3;5(3):e01193-14. doi: 10.1128/mBio.01193-14.

6.

Identification and environmental distribution of dcpA, which encodes the reductive dehalogenase catalyzing the dichloroelimination of 1,2-dichloropropane to propene in organohalide-respiring chloroflexi.

Padilla-Crespo E, Yan J, Swift C, Wagner DD, Chourey K, Hettich RL, Ritalahti KM, Löffler FE.

Appl Environ Microbiol. 2014 Feb;80(3):808-18. doi: 10.1128/AEM.02927-13. Epub 2013 Nov 15.

7.

Design and application of an internal amplification control to improve Dehalococcoides mccartyi 16S rRNA gene enumeration by qPCR.

Hatt JK, Ritalahti KM, Ogles DM, Lebrón CA, Löffler FE.

Environ Sci Technol. 2013 Oct 1;47(19):11131-8. doi: 10.1021/es4019817. Epub 2013 Sep 20.

PMID:
24053159
8.

Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils.

Sanford RA, Wagner DD, Wu Q, Chee-Sanford JC, Thomas SH, Cruz-García C, Rodríguez G, Massol-Deyá A, Krishnani KK, Ritalahti KM, Nissen S, Konstantinidis KT, Löffler FE.

Proc Natl Acad Sci U S A. 2012 Nov 27;109(48):19709-14. doi: 10.1073/pnas.1211238109. Epub 2012 Nov 12.

9.

Unexpected specificity of interspecies cobamide transfer from Geobacter spp. to organohalide-respiring Dehalococcoides mccartyi strains.

Yan J, Ritalahti KM, Wagner DD, Löffler FE.

Appl Environ Microbiol. 2012 Sep;78(18):6630-6. doi: 10.1128/AEM.01535-12. Epub 2012 Jul 6.

10.

Genomic determinants of organohalide-respiration in Geobacter lovleyi, an unusual member of the Geobacteraceae.

Wagner DD, Hug LA, Hatt JK, Spitzmiller MR, Padilla-Crespo E, Ritalahti KM, Edwards EA, Konstantinidis KT, Löffler FE.

BMC Genomics. 2012 May 22;13:200. doi: 10.1186/1471-2164-13-200.

11.

The chimeric genome of Sphaerochaeta: nonspiral spirochetes that break with the prevalent dogma in spirochete biology.

Caro-Quintero A, Ritalahti KM, Cusick KD, Löffler FE, Konstantinidis KT.

MBio. 2012 May 15;3(3). pii: e00025-12. doi: 10.1128/mBio.00025-12. Print 2012.

12.
13.

Dichloromethane fermentation by a Dehalobacter sp. in an enrichment culture derived from pristine river sediment.

Justicia-Leon SD, Ritalahti KM, Mack EE, Löffler FE.

Appl Environ Microbiol. 2012 Feb;78(4):1288-91. doi: 10.1128/AEM.07325-11. Epub 2011 Dec 16.

14.

Sphaerochaeta globosa gen. nov., sp. nov. and Sphaerochaeta pleomorpha sp. nov., free-living, spherical spirochaetes.

Ritalahti KM, Justicia-Leon SD, Cusick KD, Ramos-Hernandez N, Rubin M, Dornbush J, Löffler FE.

Int J Syst Evol Microbiol. 2012 Jan;62(Pt 1):210-6. doi: 10.1099/ijs.0.023986-0. Epub 2011 Mar 11.

PMID:
21398503
15.

Comparing on-site to off-site biomass collection for Dehalococcoides biomarker gene quantification to predict in situ chlorinated ethene detoxification potential.

Ritalahti KM, Hatt JK, Lugmayr V, Henn K, Petrovskis EA, Ogles DM, Davis GA, Yeager CM, Lebrón CA, Löffler FE.

Environ Sci Technol. 2010 Jul 1;44(13):5127-33. doi: 10.1021/es100408r.

PMID:
20545341
16.

Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides.

McMurdie PJ, Behrens SF, Müller JA, Göke J, Ritalahti KM, Wagner R, Goltsman E, Lapidus A, Holmes S, Löffler FE, Spormann AM.

PLoS Genet. 2009 Nov;5(11):e1000714. doi: 10.1371/journal.pgen.1000714. Epub 2009 Nov 6.

17.

Oxygen effect on Dehalococcoides viability and biomarker quantification.

Amos BK, Ritalahti KM, Cruz-Garcia C, Padilla-Crespo E, Löffler FE.

Environ Sci Technol. 2008 Aug 1;42(15):5718-26.

PMID:
18754499
18.

Resolution of culture Clostridium bifermentans DPH-1 into two populations, a Clostridium sp. and tetrachloroethene-dechlorinating Desulfitobacterium hafniense strain JH1.

Fletcher KE, Ritalahti KM, Pennell KD, Takamizawa K, Löffler FE.

Appl Environ Microbiol. 2008 Oct;74(19):6141-3. doi: 10.1128/AEM.00994-08. Epub 2008 Aug 15.

19.
20.

Environmental distribution of the trichloroethene reductive dehalogenase gene (tceA) suggests lateral gene transfer among Dehalococcoides.

Krajmalnik-Brown R, Sung Y, Ritalahti KM, Saunders FM, Löffler FE.

FEMS Microbiol Ecol. 2007 Jan;59(1):206-14.

21.

Geobacter lovleyi sp. nov. strain SZ, a novel metal-reducing and tetrachloroethene-dechlorinating bacterium.

Sung Y, Fletcher KE, Ritalahti KM, Apkarian RP, Ramos-Hernández N, Sanford RA, Mesbah NM, Löffler FE.

Appl Environ Microbiol. 2006 Apr;72(4):2775-82.

22.

Quantitative PCR targeting 16S rRNA and reductive dehalogenase genes simultaneously monitors multiple Dehalococcoides strains.

Ritalahti KM, Amos BK, Sung Y, Wu Q, Koenigsberg SS, Löffler FE.

Appl Environ Microbiol. 2006 Apr;72(4):2765-74.

23.

Dechlorination of chloroethenes is inhibited by 2-bromoethanesulfonate in the absence of methanogens.

Loffler FE, Ritalahti KM, Tiedje JM.

Appl Environ Microbiol. 1997 Dec;63(12):4982-5.

24.

Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to-ethene-respiring Dehalococcoides isolate.

Sung Y, Ritalahti KM, Apkarian RP, Löffler FE.

Appl Environ Microbiol. 2006 Mar;72(3):1980-7.

25.

Enrichment, cultivation, and detection of reductively dechlorinating bacteria.

Löffler FE, Sanford RA, Ritalahti KM.

Methods Enzymol. 2005;397:77-111.

PMID:
16260286
26.

Isolation and characterization of Dehalococcoides sp. strain FL2, a trichloroethene (TCE)- and 1,2-dichloroethene-respiring anaerobe.

He J, Sung Y, Krajmalnik-Brown R, Ritalahti KM, Löffler FE.

Environ Microbiol. 2005 Sep;7(9):1442-50.

PMID:
16104866
27.

Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1.

Krajmalnik-Brown R, Hölscher T, Thomson IN, Saunders FM, Ritalahti KM, Löffler FE.

Appl Environ Microbiol. 2004 Oct;70(10):6347-51.

28.

Multiple nonidentical reductive-dehalogenase-homologous genes are common in Dehalococcoides.

Hölscher T, Krajmalnik-Brown R, Ritalahti KM, Von Wintzingerode F, Görisch H, Löffler FE, Adrian L.

Appl Environ Microbiol. 2004 Sep;70(9):5290-7.

29.
30.

Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium.

He J, Ritalahti KM, Yang KL, Koenigsberg SS, Löffler FE.

Nature. 2003 Jul 3;424(6944):62-5.

PMID:
12840758
31.

Characterization of two tetrachloroethene-reducing, acetate-oxidizing anaerobic bacteria and their description as Desulfuromonas michiganensis sp. nov.

Sung Y, Ritalahti KM, Sanford RA, Urbance JW, Flynn SJ, Tiedje JM, Löffler FE.

Appl Environ Microbiol. 2003 May;69(5):2964-74.

33.

Complete reductive dechlorination of 1,2-dichloropropane by anaerobic bacteria.

Loffler FE, Champine JE, Ritalahti KM, Sprague SJ, Tiedje JM.

Appl Environ Microbiol. 1997 Jul;63(7):2870-5.

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