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Items: 12

1.

Chromatin-Associated RNA Sequencing (ChAR-seq).

Jukam D, Limouse C, Smith OK, Risca VI, Bell JC, Straight AF.

Curr Protoc Mol Biol. 2019 Apr;126(1):e87. doi: 10.1002/cpmb.87. Epub 2019 Feb 20.

PMID:
30786161
2.

Nucleosome Orientation Map Finds Two New Chromatin Folding Motifs.

Risca VI.

Cell. 2019 Jan 24;176(3):412-413. doi: 10.1016/j.cell.2019.01.011.

PMID:
30682367
3.

Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts.

Bell JC, Jukam D, Teran NA, Risca VI, Smith OK, Johnson WL, Skotheim JM, Greenleaf WJ, Straight AF.

Elife. 2018 Apr 12;7. pii: e27024. doi: 10.7554/eLife.27024.

4.

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.

Corces MR, Trevino AE, Hamilton EG, Greenside PG, Sinnott-Armstrong NA, Vesuna S, Satpathy AT, Rubin AJ, Montine KS, Wu B, Kathiria A, Cho SW, Mumbach MR, Carter AC, Kasowski M, Orloff LA, Risca VI, Kundaje A, Khavari PA, Montine TJ, Greenleaf WJ, Chang HY.

Nat Methods. 2017 Oct;14(10):959-962. doi: 10.1038/nmeth.4396. Epub 2017 Aug 28.

5.

BLIMP1 Induces Transient Metastatic Heterogeneity in Pancreatic Cancer.

Chiou SH, Risca VI, Wang GX, Yang D, Grüner BM, Kathiria AS, Ma RK, Vaka D, Chu P, Kozak M, Castellini L, Graves EE, Kim GE, Mourrain P, Koong AC, Giaccia AJ, Winslow MM.

Cancer Discov. 2017 Oct;7(10):1184-1199. doi: 10.1158/2159-8290.CD-17-0250. Epub 2017 Aug 8.

6.

Bacterial Tubulins A and B Exhibit Polarized Growth, Mixed-Polarity Bundling, and Destabilization by GTP Hydrolysis.

Díaz-Celis C, Risca VI, Hurtado F, Polka JK, Hansen SD, Maturana D, Lagos R, Mullins RD, Monasterio O.

J Bacteriol. 2017 Sep 5;199(19). pii: e00211-17. doi: 10.1128/JB.00211-17. Print 2017 Oct 1.

7.

Variable chromatin structure revealed by in situ spatially correlated DNA cleavage mapping.

Risca VI, Denny SK, Straight AF, Greenleaf WJ.

Nature. 2017 Jan 12;541(7636):237-241. doi: 10.1038/nature20781. Epub 2016 Dec 26.

8.

Beyond the Linear Genome: Paired-End Sequencing as a Biophysical Tool.

Risca VI, Greenleaf WJ.

Trends Cell Biol. 2015 Dec;25(12):716-719. doi: 10.1016/j.tcb.2015.08.004. Epub 2015 Oct 1.

9.

Unraveling the 3D genome: genomics tools for multiscale exploration.

Risca VI, Greenleaf WJ.

Trends Genet. 2015 Jul;31(7):357-72. doi: 10.1016/j.tig.2015.03.010. Epub 2015 Apr 14. Review.

10.

A conditional system to specifically link disruption of protein-coding function with reporter expression in mice.

Chiou SH, Kim-Kiselak C, Risca VI, Heimann MK, Chuang CH, Burds AA, Greenleaf WJ, Jacks TE, Feldser DM, Winslow MM.

Cell Rep. 2014 Jun 26;7(6):2078-86. doi: 10.1016/j.celrep.2014.05.031. Epub 2014 Jun 12.

11.

Rickettsia actin-based motility occurs in distinct phases mediated by different actin nucleators.

Reed SCO, Lamason RL, Risca VI, Abernathy E, Welch MD.

Curr Biol. 2014 Jan 6;24(1):98-103. doi: 10.1016/j.cub.2013.11.025. Epub 2013 Dec 19.

12.

Actin filament curvature biases branching direction.

Risca VI, Wang EB, Chaudhuri O, Chia JJ, Geissler PL, Fletcher DA.

Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2913-8. doi: 10.1073/pnas.1114292109. Epub 2012 Jan 30.

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