PubMed

Raj A, Rinn JL.

Cold Spring Harb Perspect Biol. 2019 May 1;11(5). pii: a032094. doi: 10.1101/cshperspect.a032094. Review.

Mattioli K, Volders PJ, Gerhardinger C, Lee JC, Maass PG, Melé M, Rinn JL.

Genome Res. 2019 Mar;29(3):344-355. doi: 10.1101/gr.242222.118. Epub 2019 Jan 25.

Groff AF, Barutcu AR, Lewandowski JP, Rinn JL.

Genome Biol. 2018 Dec 11;19(1):219. doi: 10.1186/s13059-018-1589-8.

Elling R, Robinson EK, Shapleigh B, Liapis SC, Covarrubias S, Katzman S, Groff AF, Jiang Z, Agarwal S, Motwani M, Chan J, Sharma S, Hennessy EJ, FitzGerald GA, McManus MT, Rinn JL, Fitzgerald KA, Carpenter S.

Cell Rep. 2018 Nov 6;25(6):1511-1524.e6. doi: 10.1016/j.celrep.2018.10.027.

Cacchiarelli D, Qiu X, Srivatsan S, Manfredi A, Ziller M, Overbey E, Grimaldi A, Grimsby J, Pokharel P, Livak KJ, Li S, Meissner A, Mikkelsen TS, Rinn JL, Trapnell C.

Cell Syst. 2018 Sep 26;7(3):258-268.e3. doi: 10.1016/j.cels.2018.07.006. Epub 2018 Sep 5.

Maass PG, Barutcu AR, Rinn JL.

J Cell Biol. 2019 Jan 7;218(1):27-38. doi: 10.1083/jcb.201806052. Epub 2018 Sep 4. Review.

Maass PG, Weise A, Rittscher K, Lichtenwald J, Barutcu AR, Liehr T, Aydin A, Wefeld-Neuenfeld Y, Pölsler L, Tinschert S, Rinn JL, Luft FC, Bähring S.

EMBO J. 2018 Aug 1;37(15). pii: e96257. doi: 10.15252/embj.201696257. Epub 2018 Jun 19.

Bester AC, Lee JD, Chavez A, Lee YR, Nachmani D, Vora S, Victor J, Sauvageau M, Monteleone E, Rinn JL, Provero P, Church GM, Clohessy JG, Pandolfi PP.

Cell. 2018 Apr 19;173(3):649-664.e20. doi: 10.1016/j.cell.2018.03.052.

Barutcu AR, Maass PG, Lewandowski JP, Weiner CL, Rinn JL.

Nat Commun. 2018 Apr 13;9(1):1444. doi: 10.1038/s41467-018-03614-0.

Cesana M, Guo MH, Cacchiarelli D, Wahlster L, Barragan J, Doulatov S, Vo LT, Salvatori B, Trapnell C, Clement K, Cahan P, Tsanov KM, Sousa PM, Tazon-Vega B, Bolondi A, Giorgi FM, Califano A, Rinn JL, Meissner A, Hirschhorn JN, Daley GQ.

Cell Stem Cell. 2018 Apr 5;22(4):575-588.e7. doi: 10.1016/j.stem.2018.03.012.

Maass PG, Barutcu AR, Weiner CL, Rinn JL.

Mol Cell. 2018 Apr 5;70(1):188-189. doi: 10.1016/j.molcel.2018.03.021. No abstract available.

Maass PG, Barutcu AR, Weiner CL, Rinn JL.

Mol Cell. 2018 Mar 15;69(6):1039-1045.e3. doi: 10.1016/j.molcel.2018.02.007. Epub 2018 Mar 8. Erratum in: Mol Cell. 2018 Apr 5;70(1):188-189.

Donaghey J, Thakurela S, Charlton J, Chen JS, Smith ZD, Gu H, Pop R, Clement K, Stamenova EK, Karnik R, Kelley DR, Gifford CA, Cacchiarelli D, Rinn JL, Gnirke A, Ziller MJ, Meissner A.

Nat Genet. 2018 Feb;50(2):250-258. doi: 10.1038/s41588-017-0034-3. Epub 2018 Jan 22.

Maass PG, Barutcu AR, Shechner DM, Weiner CL, Melé M, Rinn JL.

Nat Struct Mol Biol. 2018 Feb;25(2):176-184. doi: 10.1038/s41594-017-0015-3. Epub 2018 Jan 8.

Shukla CJ, McCorkindale AL, Gerhardinger C, Korthauer KD, Cabili MN, Shechner DM, Irizarry RA, Maass PG, Rinn JL.

EMBO J. 2018 Mar 15;37(6). pii: e98452. doi: 10.15252/embj.201798452. Epub 2018 Jan 15.

Kaewsapsak P, Shechner DM, Mallard W, Rinn JL, Ting AY.

Elife. 2017 Dec 14;6. pii: e29224. doi: 10.7554/eLife.29224.

Younger ST, Rinn JL.

Nucleic Acids Res. 2017 Sep 29;45(17):9889-9900. doi: 10.1093/nar/gkx577.

Mowel WK, McCright SJ, Kotzin JJ, Collet MA, Uyar A, Chen X, DeLaney A, Spencer SP, Virtue AT, Yang E, Villarino A, Kurachi M, Dunagin MC, Pritchard GH, Stein J, Hughes C, Fonseca-Pereira D, Veiga-Fernandes H, Raj A, Kambayashi T, Brodsky IE, O'Shea JJ, Wherry EJ, Goff LA, Rinn JL, Williams A, Flavell RA, Henao-Mejia J.

Immunity. 2017 Sep 19;47(3):435-449.e8. doi: 10.1016/j.immuni.2017.08.012.

Delás MJ, Sabin LR, Dolzhenko E, Knott SR, Munera Maravilla E, Jackson BT, Wild SA, Kovacevic T, Stork EM, Zhou M, Erard N, Lee E, Kelley DR, Roth M, Barbosa IA, Zuber J, Rinn JL, Smith AD, Hannon GJ.

Elife. 2017 Sep 6;6. pii: e25607. doi: 10.7554/eLife.25607.

Melé M, Mattioli K, Mallard W, Shechner DM, Gerhardinger C, Rinn JL.

Genome Res. 2017 Jan;27(1):27-37. doi: 10.1101/gr.214205.116. Epub 2016 Dec 7.

Henry WS, Hendrickson DG, Beca F, Glass B, Lindahl-Allen M, He L, Ji Z, Struhl K, Beck AH, Rinn JL, Toker A.

Oncotarget. 2016 Dec 13;7(50):81981-81994. doi: 10.18632/oncotarget.11962.

Caballero IS, Honko AN, Gire SK, Winnicki SM, Melé M, Gerhardinger C, Lin AE, Rinn JL, Sabeti PC, Hensley LE, Connor JH.

BMC Genomics. 2016 Sep 5;17:707. doi: 10.1186/s12864-016-3060-0.

Kotzin JJ, Spencer SP, McCright SJ, Kumar DBU, Collet MA, Mowel WK, Elliott EN, Uyar A, Makiya MA, Dunagin MC, Harman CCD, Virtue AT, Zhu S, Bailis W, Stein J, Hughes C, Raj A, Wherry EJ, Goff LA, Klion AD, Rinn JL, Williams A, Flavell RA, Henao-Mejia J.

Nature. 2016 Sep 8;537(7619):239-243. doi: 10.1038/nature19346. Epub 2016 Aug 15.

Groff AF, Sanchez-Gomez DB, Soruco MML, Gerhardinger C, Barutcu AR, Li E, Elcavage L, Plana O, Sanchez LV, Lee JC, Sauvageau M, Rinn JL.

Cell Rep. 2016 Aug 23;16(8):2178-2186. doi: 10.1016/j.celrep.2016.07.050. Epub 2016 Aug 11.

Melé M, Rinn JL.

Mol Cell. 2016 Jun 2;62(5):657-64. doi: 10.1016/j.molcel.2016.05.011. Review.

Kelley DR, Snoek J, Rinn JL.

Genome Res. 2016 Jul;26(7):990-9. doi: 10.1101/gr.200535.115. Epub 2016 May 3.

Ferreira LM, Meissner TB, Mikkelsen TS, Mallard W, O'Donnell CW, Tilburgs T, Gomes HA, Camahort R, Sherwood RI, Gifford DK, Rinn JL, Cowan CA, Strominger JL.

Proc Natl Acad Sci U S A. 2016 May 10;113(19):5364-9. doi: 10.1073/pnas.1602886113. Epub 2016 Apr 13.

Hacisuleyman E, Shukla CJ, Weiner CL, Rinn JL.

Nat Commun. 2016 Mar 24;7:11021. doi: 10.1038/ncomms11021.

Du Z, Sun T, Hacisuleyman E, Fei T, Wang X, Brown M, Rinn JL, Lee MG, Chen Y, Kantoff PW, Liu XS.

Nat Commun. 2016 Mar 15;7:10982. doi: 10.1038/ncomms10982.

G Hendrickson D, Kelley DR, Tenen D, Bernstein B, Rinn JL.

Genome Biol. 2016 Feb 16;17:28. doi: 10.1186/s13059-016-0878-3.

Briggs JA, Wolvetang EJ, Mattick JS, Rinn JL, Barry G.

Neuron. 2015 Dec 2;88(5):861-877. doi: 10.1016/j.neuron.2015.09.045. Review.

Younger ST, Rinn JL.

Proc Natl Acad Sci U S A. 2015 Dec 8;112(49):15008-9. doi: 10.1073/pnas.1520341112. Epub 2015 Nov 18. No abstract available.

Choi J, Lee S, Mallard W, Clement K, Tagliazucchi GM, Lim H, Choi IY, Ferrari F, Tsankov AM, Pop R, Lee G, Rinn JL, Meissner A, Park PJ, Hochedlinger K.

Nat Biotechnol. 2015 Nov;33(11):1173-81. doi: 10.1038/nbt.3388. Epub 2015 Oct 26.

Goff LA, Rinn JL.

Genome Res. 2015 Oct;25(10):1456-65. doi: 10.1101/gr.191122.115. Review.

Ng SY, Soh BS, Rodriguez-Muela N, Hendrickson DG, Price F, Rinn JL, Rubin LL.

Cell Stem Cell. 2015 Nov 5;17(5):569-84. doi: 10.1016/j.stem.2015.08.003. Epub 2015 Aug 27.

Cacchiarelli D, Trapnell C, Ziller MJ, Soumillon M, Cesana M, Karnik R, Donaghey J, Smith ZD, Ratanasirintrawoot S, Zhang X, Ho Sui SJ, Wu Z, Akopian V, Gifford CA, Doench J, Rinn JL, Daley GQ, Meissner A, Lander ES, Mikkelsen TS.

Cell. 2015 Jul 16;162(2):412-424. doi: 10.1016/j.cell.2015.06.016.

Broadbent KM, Broadbent JC, Ribacke U, Wirth D, Rinn JL, Sabeti PC.

BMC Genomics. 2015 Jun 13;16:454. doi: 10.1186/s12864-015-1603-4.

Goff LA, Groff AF, Sauvageau M, Trayes-Gibson Z, Sanchez-Gomez DB, Morse M, Martin RD, Elcavage LE, Liapis SC, Gonzalez-Celeiro M, Plana O, Li E, Gerhardinger C, Tomassy GS, Arlotta P, Rinn JL.

Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):6855-62.

Shechner DM, Hacisuleyman E, Younger ST, Rinn JL.

Nat Methods. 2015 Jul;12(7):664-70. doi: 10.1038/nmeth.3433. Epub 2015 Jun 1.

Younger ST, Kenzelmann-Broz D, Jung H, Attardi LD, Rinn JL.

Nucleic Acids Res. 2015 May 19;43(9):4447-62. doi: 10.1093/nar/gkv284. Epub 2015 Apr 16.

Liao J, Karnik R, Gu H, Ziller MJ, Clement K, Tsankov AM, Akopian V, Gifford CA, Donaghey J, Galonska C, Pop R, Reyon D, Tsai SQ, Mallard W, Joung JK, Rinn JL, Gnirke A, Meissner A.

Nat Genet. 2015 May;47(5):469-78. doi: 10.1038/ng.3258. Epub 2015 Mar 30.

Cabili MN, Dunagin MC, McClanahan PD, Biaesch A, Padovan-Merhar O, Regev A, Rinn JL, Raj A.

Genome Biol. 2015 Jan 29;16:20. doi: 10.1186/s13059-015-0586-4.

Kelley DR, Hendrickson DG, Tenen D, Rinn JL.

Genome Biol. 2014 Dec 3;15(12):537. doi: 10.1186/s13059-014-0537-5.

Mattick JS, Rinn JL.

Nat Struct Mol Biol. 2015 Jan;22(1):5-7. doi: 10.1038/nsmb.2942.

Molyneaux BJ, Goff LA, Brettler AC, Chen HH, Hrvatin S, Rinn JL, Arlotta P.

Neuron. 2015 Jan 21;85(2):275-288. doi: 10.1016/j.neuron.2014.12.024. Epub 2014 Dec 31. Erratum in: Neuron. 2016 Jan 6;89(1):235.

Rinn JL.

Cold Spring Harb Perspect Biol. 2014 Aug 1;6(8). pii: a018614. doi: 10.1101/cshperspect.a018614. Review.

Lodato S, Molyneaux BJ, Zuccaro E, Goff LA, Chen HH, Yuan W, Meleski A, Takahashi E, Mahony S, Rinn JL, Gifford DK, Arlotta P.

Nat Neurosci. 2014 Aug;17(8):1046-54. doi: 10.1038/nn.3757. Epub 2014 Jul 6.

Younger ST, Rinn JL.

Cell Res. 2014 Jun;24(6):643-4. doi: 10.1038/cr.2014.54. Epub 2014 Apr 29.

Trapnell C, Cacchiarelli D, Grimsby J, Pokharel P, Li S, Morse M, Lennon NJ, Livak KJ, Mikkelsen TS, Rinn JL.

Nat Biotechnol. 2014 Apr;32(4):381-386. doi: 10.1038/nbt.2859. Epub 2014 Mar 23.

Rinn JL, Ule J.

Genome Biol. 2014 Jan 31;15(1):401. doi: 10.1186/gb4158. No abstract available.