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Items: 1 to 50 of 72

1.

Body size-dependent energy storage causes Kleiber's law scaling of the metabolic rate in planarians.

Thommen A, Werner S, Frank O, Philipp J, Knittelfelder O, Quek Y, Fahmy K, Shevchenko A, Friedrich BM, Jülicher F, Rink JC.

Elife. 2019 Jan 4;8. pii: e38187. doi: 10.7554/eLife.38187.

2.

PlanMine 3.0-improvements to a mineable resource of flatworm biology and biodiversity.

Rozanski A, Moon H, Brandl H, Martín-Durán JM, Grohme MA, Hüttner K, Bartscherer K, Henry I, Rink JC.

Nucleic Acids Res. 2019 Jan 8;47(D1):D812-D820. doi: 10.1093/nar/gky1070.

3.

Content-aware image restoration: pushing the limits of fluorescence microscopy.

Weigert M, Schmidt U, Boothe T, Müller A, Dibrov A, Jain A, Wilhelm B, Schmidt D, Broaddus C, Culley S, Rocha-Martins M, Segovia-Miranda F, Norden C, Henriques R, Zerial M, Solimena M, Rink J, Tomancak P, Royer L, Jug F, Myers EW.

Nat Methods. 2018 Dec;15(12):1090-1097. doi: 10.1038/s41592-018-0216-7. Epub 2018 Nov 26.

PMID:
30478326
4.

Small- and Large-Scale High Molecular Weight Genomic DNA Extraction from Planarians.

Grohme MA, Vila-Farré M, Rink JC.

Methods Mol Biol. 2018;1774:267-275. doi: 10.1007/978-1-4939-7802-1_7.

PMID:
29916160
5.

Total RNA Isolation from Planarian Tissues.

Liu SY, Rink JC.

Methods Mol Biol. 2018;1774:259-265. doi: 10.1007/978-1-4939-7802-1_6.

PMID:
29916159
6.

Stem Cells, Patterning and Regeneration in Planarians: Self-Organization at the Organismal Scale.

Rink JC.

Methods Mol Biol. 2018;1774:57-172. doi: 10.1007/978-1-4939-7802-1_2. Review.

PMID:
29916155
7.

A software tool 'CroCo' detects pervasive cross-species contamination in next generation sequencing data.

Simion P, Belkhir K, François C, Veyssier J, Rink JC, Manuel M, Philippe H, Telford MJ.

BMC Biol. 2018 Mar 5;16(1):28. doi: 10.1186/s12915-018-0486-7.

8.

Nitric Oxide-Delivering High-Density Lipoprotein-like Nanoparticles as a Biomimetic Nanotherapy for Vascular Diseases.

Rink JS, Sun W, Misener S, Wang JJ, Zhang ZJ, Kibbe MR, Dravid VP, Venkatraman S, Thaxton CS.

ACS Appl Mater Interfaces. 2018 Feb 28;10(8):6904-6916. doi: 10.1021/acsami.7b18525. Epub 2018 Feb 13.

PMID:
29385802
9.

The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms.

Grohme MA, Schloissnig S, Rozanski A, Pippel M, Young GR, Winkler S, Brandl H, Henry I, Dahl A, Powell S, Hiller M, Myers E, Rink JC.

Nature. 2018 Feb 1;554(7690):56-61. doi: 10.1038/nature25473. Epub 2018 Jan 24.

10.

HDL nanoparticles targeting sonic hedgehog subtype medulloblastoma.

Bell JB, Rink JS, Eckerdt F, Clymer J, Goldman S, Thaxton CS, Platanias LC.

Sci Rep. 2018 Jan 19;8(1):1211. doi: 10.1038/s41598-017-18100-8.

11.

A dynamically diluted alignment model reveals the impact of cell turnover on the plasticity of tissue polarity patterns.

Hoffmann KB, Voss-Böhme A, Rink JC, Brusch L.

J R Soc Interface. 2017 Oct;14(135). pii: 20170466. doi: 10.1098/rsif.2017.0466.

12.

Rational Targeting of Cellular Cholesterol in Diffuse Large B-Cell Lymphoma (DLBCL) Enabled by Functional Lipoprotein Nanoparticles: A Therapeutic Strategy Dependent on Cell of Origin.

Rink JS, Yang S, Cen O, Taxter T, McMahon KM, Misener S, Behdad A, Longnecker R, Gordon LI, Thaxton CS.

Mol Pharm. 2017 Nov 6;14(11):4042-4051. doi: 10.1021/acs.molpharmaceut.7b00710. Epub 2017 Oct 3.

13.

A tunable refractive index matching medium for live imaging cells, tissues and model organisms.

Boothe T, Hilbert L, Heide M, Berninger L, Huttner WB, Zaburdaev V, Vastenhouw NL, Myers EW, Drechsel DN, Rink JC.

Elife. 2017 Jul 14;6. pii: e27240. doi: 10.7554/eLife.27240.

14.

Intronic miRNA-641 controls its host Gene's pathway PI3K/AKT and this relationship is dysfunctional in glioblastoma multiforme.

Hinske LC, Heyn J, Hübner M, Rink J, Hirschberger S, Kreth S.

Biochem Biophys Res Commun. 2017 Aug 5;489(4):477-483. doi: 10.1016/j.bbrc.2017.05.175. Epub 2017 May 30.

PMID:
28576488
15.

Systemically administered collagen-targeted gold nanoparticles bind to arterial injury following vascular interventions.

Meyers MW, Rink JS, Jiang Q, Kelly ME, Vercammen JM, Thaxton CS, Kibbe MR.

Physiol Rep. 2017 Feb;5(4). pii: e13128. doi: 10.14814/phy2.13128. Epub 2017 Feb 27.

16.

Antagonistic Self-Organizing Patterning Systems Control Maintenance and Regeneration of the Anteroposterior Axis in Planarians.

Stückemann T, Cleland JP, Werner S, Thi-Kim Vu H, Bayersdorf R, Liu SY, Friedrich B, Jülicher F, Rink JC.

Dev Cell. 2017 Feb 6;40(3):248-263.e4. doi: 10.1016/j.devcel.2016.12.024.

17.

Betwixt and Between: Intracranial Perspective on Zygomatic Arch Plasticity and Function in Mammals.

Franks EM, Holton NE, Scott JE, McAbee KR, Rink JT, Pax KC, Pasquinelly AC, Scollan JP, Eastman MM, Ravosa MJ.

Anat Rec (Hoboken). 2016 Dec;299(12):1646-1660. doi: 10.1002/ar.23477.

18.

Lipoproteins and lipoprotein mimetics for imaging and drug delivery.

Thaxton CS, Rink JS, Naha PC, Cormode DP.

Adv Drug Deliv Rev. 2016 Nov 15;106(Pt A):116-131. doi: 10.1016/j.addr.2016.04.020. Epub 2016 Apr 29. Review.

19.

Self-organization in development, regeneration and organoids.

Werner S, Vu HT, Rink JC.

Curr Opin Cell Biol. 2017 Feb;44:102-109. doi: 10.1016/j.ceb.2016.09.002. Epub 2016 Oct 5. Review.

PMID:
27720307
20.

Mosaic Interdigitated Structure in Nanoparticle-Templated Phospholipid Bilayer Supports Partial Lipidation of Apolipoprotein A-I.

Sun W, Wu W, McMahon KM, Rink JS, Thaxton CS.

Part Part Syst Charact. 2016 Jun;33(6):300-305. doi: 10.1002/ppsc.201600032. Epub 2016 Apr 8.

21.

Down-regulation of MicroRNA-31 in CD4+ T Cells Contributes to Immunosuppression in Human Sepsis by Promoting TH2 Skewing.

van der Heide V, Möhnle P, Rink J, Briegel J, Kreth S.

Anesthesiology. 2016 Apr;124(4):908-22. doi: 10.1097/ALN.0000000000001031.

PMID:
26978146
22.

The mid-developmental transition and the evolution of animal body plans.

Levin M, Anavy L, Cole AG, Winter E, Mostov N, Khair S, Senderovich N, Kovalev E, Silver DH, Feder M, Fernandez-Valverde SL, Nakanishi N, Simmons D, Simakov O, Larsson T, Liu SY, Jerafi-Vider A, Yaniv K, Ryan JF, Martindale MQ, Rink JC, Arendt D, Degnan SM, Degnan BM, Hashimshony T, Yanai I.

Nature. 2016 Mar 31;531(7596):637-641. doi: 10.1038/nature16994. Epub 2016 Feb 17.

23.

PlanMine--a mineable resource of planarian biology and biodiversity.

Brandl H, Moon H, Vila-Farré M, Liu SY, Henry I, Rink JC.

Nucleic Acids Res. 2016 Jan 4;44(D1):D764-73. doi: 10.1093/nar/gkv1148. Epub 2015 Nov 17.

24.

Stem cells and fluid flow drive cyst formation in an invertebrate excretory organ.

Thi-Kim Vu H, Rink JC, McKinney SA, McClain M, Lakshmanaperumal N, Alexander R, Sánchez Alvarado A.

Elife. 2015 Jun 9;4. doi: 10.7554/eLife.07405.

25.

Emergence of naturally occurring scaffolds for cell transplantation in type 1 diabetes.

Kaufman DB, Rink JS.

Pediatr Transplant. 2015 Jun;19(4):345-7. doi: 10.1111/petr.12451. No abstract available.

PMID:
25940373
26.

A haptotaxis assay for leukocytes based on surface-bound chemokine gradients.

Rink I, Rink J, Helmer D, Sachs D, Schmitz K.

J Immunol. 2015 Jun 1;194(11):5549-58. doi: 10.4049/jimmunol.1500148. Epub 2015 Apr 27.

27.

Scaling and regeneration of self-organized patterns.

Werner S, Stückemann T, Beirán Amigo M, Rink JC, Jülicher F, Friedrich BM.

Phys Rev Lett. 2015 Apr 3;114(13):138101. Epub 2015 Apr 1.

PMID:
25884138
28.

How to improve prescription of inhaled salbutamol by providing standardised feedback on administration: a controlled intervention pilot study with follow-up.

Neininger MP, Kaune A, Bertsche A, Rink J, Musiol J, Frontini R, Prenzel F, Kiess W, Bertsche T.

BMC Health Serv Res. 2015 Jan 28;15:40. doi: 10.1186/s12913-015-0702-x.

29.

Shape mode analysis exposes movement patterns in biology: flagella and flatworms as case studies.

Werner S, Rink JC, Riedel-Kruse IH, Friedrich BM.

PLoS One. 2014 Nov 26;9(11):e113083. doi: 10.1371/journal.pone.0113083. eCollection 2014.

30.

Teacher effectiveness in physical education-consensus?

Rink J.

Res Q Exerc Sport. 2014 Sep;85(3):282-6. doi: 10.1080/02701367.2014.932656.

PMID:
25141080
31.

Measuring teacher effectiveness in physical education.

Rink JE.

Res Q Exerc Sport. 2013 Dec;84(4):407-18.

PMID:
24592771
32.

Knockdown of intraislet IKKβ by spherical nucleic acid conjugates prevents cytokine-induced injury and enhances graft survival.

Rink JS, McMahon KM, Zhang X, Chen X, Mirkin CA, Thaxton CS, Kaufman DB.

Transplantation. 2013 Nov 27;96(10):877-84. doi: 10.1097/TP.0b013e3182a4190e.

33.

Update on current and potential nanoparticle cancer therapies.

Rink JS, Plebanek MP, Tripathy S, Thaxton CS.

Curr Opin Oncol. 2013 Nov;25(6):646-51. doi: 10.1097/CCO.0000000000000012. Review.

34.

Reactivating head regrowth in a regeneration-deficient planarian species.

Liu SY, Selck C, Friedrich B, Lutz R, Vila-Farré M, Dahl A, Brandl H, Lakshmanaperumal N, Henry I, Rink JC.

Nature. 2013 Aug 1;500(7460):81-4. doi: 10.1038/nature12414. Epub 2013 Jul 24.

PMID:
23883932
35.

Biomimetic, synthetic HDL nanostructures for lymphoma.

Yang S, Damiano MG, Zhang H, Tripathy S, Luthi AJ, Rink JS, Ugolkov AV, Singh AT, Dave SS, Gordon LI, Thaxton CS.

Proc Natl Acad Sci U S A. 2013 Feb 12;110(7):2511-6. doi: 10.1073/pnas.1213657110. Epub 2013 Jan 23.

36.

Evolutionarily ancient association of the FoxJ1 transcription factor with the motile ciliogenic program.

Vij S, Rink JC, Ho HK, Babu D, Eitel M, Narasimhan V, Tiku V, Westbrook J, Schierwater B, Roy S.

PLoS Genet. 2012;8(11):e1003019. doi: 10.1371/journal.pgen.1003019. Epub 2012 Nov 8.

37.

Stem cell systems and regeneration in planaria.

Rink JC.

Dev Genes Evol. 2013 Mar;223(1-2):67-84. doi: 10.1007/s00427-012-0426-4. Epub 2012 Nov 9. Review.

38.

Corticosteroid resistance in sepsis is influenced by microRNA-124--induced downregulation of glucocorticoid receptor-α.

Ledderose C, Möhnle P, Limbeck E, Schütz S, Weis F, Rink J, Briegel J, Kreth S.

Crit Care Med. 2012 Oct;40(10):2745-53.

PMID:
22846781
39.

The portrayal of bariatric surgery in the UK print media.

Williamson JM, Rink JA, Hewin DH.

Obes Surg. 2012 Nov;22(11):1690-4. doi: 10.1007/s11695-012-0701-5. Review.

PMID:
22763605
40.

The ubiquitin ligase HACE1 regulates Golgi membrane dynamics during the cell cycle.

Tang D, Xiang Y, De Renzis S, Rink J, Zheng G, Zerial M, Wang Y.

Nat Commun. 2011 Oct 11;2:501. doi: 10.1038/ncomms1509.

41.

Conditional and specific inhibition of NF-κB in mouse pancreatic β cells prevents cytokine-induced deleterious effects and improves islet survival posttransplant.

Rink JS, Chen X, Zhang X, Kaufman DB.

Surgery. 2012 Feb;151(2):330-9. doi: 10.1016/j.surg.2011.07.011. Epub 2011 Oct 6.

42.

The maintenance and regeneration of the planarian excretory system are regulated by EGFR signaling.

Rink JC, Vu HT, Sánchez Alvarado A.

Development. 2011 Sep;138(17):3769-80. doi: 10.1242/dev.066852.

43.

Transfection of pancreatic islets using polyvalent DNA-functionalized gold nanoparticles.

Rink JS, McMahon KM, Chen X, Mirkin CA, Thaxton CS, Kaufman DB.

Surgery. 2010 Aug;148(2):335-45. doi: 10.1016/j.surg.2010.05.013.

44.

Systems survey of endocytosis by multiparametric image analysis.

Collinet C, Stöter M, Bradshaw CR, Samusik N, Rink JC, Kenski D, Habermann B, Buchholz F, Henschel R, Mueller MS, Nagel WE, Fava E, Kalaidzidis Y, Zerial M.

Nature. 2010 Mar 11;464(7286):243-9. doi: 10.1038/nature08779. Epub 2010 Feb 28. Erratum in: Nature. 2014 Sep 18;513(7518):444.

PMID:
20190736
45.

Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia.

Rink JC, Gurley KA, Elliott SA, Sánchez Alvarado A.

Science. 2009 Dec 4;326(5958):1406-10. doi: 10.1126/science.1178712. Epub 2009 Oct 22.

46.

Formaldehyde-based whole-mount in situ hybridization method for planarians.

Pearson BJ, Eisenhoffer GT, Gurley KA, Rink JC, Miller DE, Sánchez Alvarado A.

Dev Dyn. 2009 Feb;238(2):443-50. doi: 10.1002/dvdy.21849.

47.

Membrane identity and GTPase cascades regulated by toggle and cut-out switches.

Del Conte-Zerial P, Brusch L, Rink JC, Collinet C, Kalaidzidis Y, Zerial M, Deutsch A.

Mol Syst Biol. 2008;4:206. doi: 10.1038/msb.2008.45. Epub 2008 Jul 15.

48.

A new archaic Homo sapiens fossil from Lake Eyasi, Tanzania.

Domínguez-Rodrigo M, Mabulla A, Luque L, Thompson JW, Rink J, Bushozi P, Díez-Martin F, Alcala L.

J Hum Evol. 2008 Jun;54(6):899-903. doi: 10.1016/j.jhevol.2008.02.002. Epub 2008 Apr 18. No abstract available.

PMID:
18394679
49.

Beta-catenin defines head versus tail identity during planarian regeneration and homeostasis.

Gurley KA, Rink JC, Sánchez Alvarado A.

Science. 2008 Jan 18;319(5861):323-7. Epub 2007 Dec 6.

50.

Teacher perceptions of a physical education statewide assessment program.

Rink J, Jones L, Kirby K, Mitchell M, Doutis P.

Res Q Exerc Sport. 2007 Jun;78(3):204-15.

PMID:
17679494

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