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Diversity of clonal types of Klebsiella pneumoniae causing infections in intensive care neonatal patients in a large urban setting.

Justo-da-Silva LH, De-Azeredo AN, Bueno AC, Montezzi LF, Leobons MBGP, Alves MS, de Souza Inhaquite P, Santos RR, Girão VBC, da Cunha AJLA, Pessoa-Silva CL, Picão RC, Hofer CB, Santoro-Lopes G, Riley LW, Moreira BM.

Braz J Microbiol. 2019 Aug 10. doi: 10.1007/s42770-019-00128-9. [Epub ahead of print]


Direct effect of the 13-valent pneumococcal conjugate vaccine use on pneumococcal colonization among children in Brazil.

Neves FPG, Cardoso NT, Cardoso CAA, Teixeira LM, Riley LW.

Vaccine. 2019 Aug 23;37(36):5265-5269. doi: 10.1016/j.vaccine.2019.07.056. Epub 2019 Jul 20.


Differentiating Epidemic from Endemic or Sporadic Infectious Disease Occurrence.

Riley LW.

Microbiol Spectr. 2019 Jul;7(4). doi: 10.1128/microbiolspec.AME-0007-2019.


Differences in gram-positive bacterial colonization and antimicrobial resistance among children in a high income inequality setting.

Neves FPG, Marlow MA, Rezende-Pereira G, Pinheiro MG, Dos Santos AFM, de Fátima Nogueira de Freitas M, Barros RR, Aguiar-Alves F, Cardoso CAA, Riley LW.

BMC Infect Dis. 2019 May 29;19(1):478. doi: 10.1186/s12879-019-4104-2.


The rheumatic heart disease healthcare paradox: disease persistence in slums despite universal healthcare coverage-a provider perspective qualitative study.

Morberg DP, Alzate López YA, Moreira S, Prata N, Riley LW, Burroughs Peña MS.

Public Health. 2019 Jun;171:15-23. doi: 10.1016/j.puhe.2019.03.015. Epub 2019 May 7.


Children Born to Mothers with Rash During Zika Virus Epidemic in Brazil: First 18 Months of Life.

Vianna RAO, Lovero KL, Oliveira SA, Fernandes AR, Santos TCSD, Lima LCSS, Carvalho FR, Quintans MDS, Bueno AC, Torbey AFM, Souza ALAAG, Farias AOP, Camacho LAB, Riley LW, Cardoso CAA.

J Trop Pediatr. 2019 Apr 21. pii: fmz019. doi: 10.1093/tropej/fmz019. [Epub ahead of print]


Genotypic analysis of uropathogenic Escherichia coli to understand factors that impact the prevalence of ß-lactam-resistant urinary tract infections in a community.

Tarlton NJ, Moritz C, Adams-Sapper S, Riley LW.

J Glob Antimicrob Resist. 2019 Mar 11. pii: S2213-7165(19)30064-5. doi: 10.1016/j.jgar.2019.03.002. [Epub ahead of print]


Extraintestinal Pathogenic Escherichia coli and Antimicrobial Drug Resistance in a Maharashtrian Drinking Water System.

Rayasam SDG, Ray I, Smith KR, Riley LW.

Am J Trop Med Hyg. 2019 May;100(5):1101-1104. doi: 10.4269/ajtmh.18-0542.


A multiplexed, indirect enzyme-linked immunoassay for the detection and differentiation of E. coli from other Enterobacteriaceae and P. aeruginosa from other glucose non-fermenters.

Jackson N, Wu TZ, Adams-Sapper S, Satoorian T, Geisberg M, Murthy N, Lee L, Riley LW.

J Microbiol Methods. 2019 Mar;158:52-58. doi: 10.1016/j.mimet.2019.01.014. Epub 2019 Jan 29.


Effect of the Bolsa Familia Programme on the outcome of tuberculosis treatment: a prospective cohort study.

Oliosi JGN, Reis-Santos B, Locatelli RL, Sales CMM, da Silva Filho WG, da Silva KC, Sanchez MN, de Andrade KVF, de Araújo GS, Shete PB, Pereira SM, Riley LW, Lienhardt C, Maciel ELN.

Lancet Glob Health. 2019 Feb;7(2):e219-e226. doi: 10.1016/S2214-109X(18)30478-9. Epub 2018 Dec 21.


Flow-cytometric analysis of human monocyte subsets targeted by Mycobacterium bovis BCG before granuloma formation.

Delcroix M, Heydari K, Dodge R, Riley LW.

Pathog Dis. 2018 Nov 1;76(8). doi: 10.1093/femspd/fty080.


Laboratory Methods in Molecular Epidemiology: Bacterial Infections.

Riley LW.

Microbiol Spectr. 2018 Nov;6(6). doi: 10.1128/microbiolspec.AME-0004-2018. Review.


Advances in Molecular Epidemiology of Infectious Diseases: Definitions, Approaches, and Scope of the Field.

Riley LW, Blanton RE.

Microbiol Spectr. 2018 Nov;6(6). doi: 10.1128/microbiolspec.AME-0001-2018. Review.


Differences in the Prevalence of Non-Communicable Disease between Slum Dwellers and the General Population in a Large Urban Area in Brazil.

Snyder RE, Rajan JV, Costa F, Lima HCAV, Calcagno JI, Couto RD, Riley LW, Reis MG, Ko AI, Ribeiro GS.

Trop Med Infect Dis. 2017 Sep 16;2(3). pii: E47. doi: 10.3390/tropicalmed2030047.


High-Level Multidrug-Resistant Escherichia coli Isolates from Wild Birds in a Large Urban Environment.

Batalha de Jesus AA, Freitas AAR, de Souza JC, Martins N, Botelho LAB, Girão VBC, Teixeira LM, Riley LW, Moreira BM.

Microb Drug Resist. 2019 Mar;25(2):167-172. doi: 10.1089/mdr.2018.0180. Epub 2018 Sep 19.


Retrospective analysis of risk factors and gaps in prevention strategies for mother-to-child HIV transmission in Rio de Janeiro, Brazil.

Lovero KL, de Oliveira TRD, Cosme EM, Cabrera NB, Guimarães MF, de Avelar JG, de Oliveira GRT, Salviato CM, Douglass-Jaimes G, Cruz MLS, João EC, de Barros ACMW, Pone MVDS, Gomes IM, Riley LW, Cardoso CAA.

BMC Public Health. 2018 Sep 10;18(1):1110. doi: 10.1186/s12889-018-6002-8.


A Population-Based Surveillance Study of Shared Genotypes of Escherichia coli Isolates from Retail Meat and Suspected Cases of Urinary Tract Infections.

Yamaji R, Friedman CR, Rubin J, Suh J, Thys E, McDermott P, Hung-Fan M, Riley LW.

mSphere. 2018 Aug 15;3(4). pii: e00179-18. doi: 10.1128/mSphere.00179-18.


Serum antiphospholipid antibody levels as biomarkers for diagnosis of pulmonary tuberculosis patients.

Takenami I, de Oliveira CC, Petrilli JD, Machado A, Riley LW, Arruda S.

Int J Tuberc Lung Dis. 2018 Sep 1;22(9):1063-1070. doi: 10.5588/ijtld.17.0874.


An Enzyme-Mediated Amplification Strategy Enables Detection of β-Lactamase Activity Directly in Unprocessed Clinical Samples for Phenotypic Detection of β-Lactam Resistance.

deBoer TR, Tarlton NJ, Yamaji R, Adams-Sapper S, Wu TZ, Maity S, Vesgesna GK, Sadlowski CM, DePaola P 4th, Riley LW, Murthy N.

Chembiochem. 2018 Oct 18;19(20):2173-2177. doi: 10.1002/cbic.201800443. Epub 2018 Sep 26.


Stress-Adaptive Responses Associated with High-Level Carbapenem Resistance in KPC-Producing Klebsiella pneumoniae.

Adams-Sapper S, Gayoso A, Riley LW.

J Pathog. 2018 Mar 19;2018:3028290. doi: 10.1155/2018/3028290. eCollection 2018.


The association between community-associated Staphylococcus aureus colonization and disease: a meta-analysis.

Kim MW, Greenfield BK, Snyder RE, Steinmaus CM, Riley LW.

BMC Infect Dis. 2018 Feb 21;18(1):86. doi: 10.1186/s12879-018-2990-3.


Persistent Pandemic Lineages of Uropathogenic Escherichia coli in a College Community from 1999 to 2017.

Yamaji R, Rubin J, Thys E, Friedman CR, Riley LW.

J Clin Microbiol. 2018 Mar 26;56(4). pii: e01834-17. doi: 10.1128/JCM.01834-17. Print 2018 Apr.


Risk factors associated with cluster size of Mycobacterium tuberculosis (Mtb) of different RFLP lineages in Brazil.

Peres RL, Vinhas SA, Ribeiro FKC, Palaci M, do Prado TN, Reis-Santos B, Zandonade E, Suffys PN, Golub JE, Riley LW, Maciel EL.

BMC Infect Dis. 2018 Feb 8;18(1):71. doi: 10.1186/s12879-018-2969-0.


Population structure of Streptococcus pneumoniae colonizing children before and after universal use of pneumococcal conjugate vaccines in Brazil: emergence and expansion of the MDR serotype 6C-CC386 lineage.

Neves FPG, Cardoso NT, Souza ARV, Snyder RE, Marlow MM, Pinto TCA, Teixeira LM, Riley LW.

J Antimicrob Chemother. 2018 May 1;73(5):1206-1212. doi: 10.1093/jac/dky001.


Prevalence and risk factors for latent tuberculosis infection among primary health care workers in Brazil.

Prado TND, Riley LW, Sanchez M, Fregona G, Nóbrega RLP, Possuelo LG, Zandonade E, Locatelli RL, Souza FM, Rajan JV, Maciel ELN.

Cad Saude Publica. 2017 Dec 18;33(12):e00154916. doi: 10.1590/0102-311X00154916.


ELISA-based assay of immunoglobulin G antibodies against mammalian cell entry 1A (Mce1A) protein: a novel diagnostic approach for leprosy.

Lima FR, Takenami I, Cavalcanti MA, Riley LW, Arruda S.

Mem Inst Oswaldo Cruz. 2017 Dec;112(12):844-849. doi: 10.1590/0074-02760160549.


Infections Caused by Antimicrobial Drug-Resistant Saprophytic Gram-Negative Bacteria in the Environment.

Raphael E, Riley LW.

Front Med (Lausanne). 2017 Oct 30;4:183. doi: 10.3389/fmed.2017.00183. eCollection 2017.


Monoclonal antibody-mediated detection of CTX-M β-lactamases in Gram-negative bacteria.

Tarlton NJ, Satoorian TS, Panchal A, Borges CA, Geisberg M, Riley LW.

J Microbiol Methods. 2018 Jan;144:37-43. doi: 10.1016/j.mimet.2017.09.017. Epub 2017 Sep 29.


Diabetes increases the risk of recent-transmission tuberculosis in household contacts in São Paulo, Brazil.

Rajan JV, Ferrazoli L, Waldman EA, Simonsen V, Ferreira P, Telles MA, Riley LW.

Int J Tuberc Lung Dis. 2017 Aug 1;21(8):916-921. doi: 10.5588/ijtld.16.0043.


Staphylococcus saprophyticus Recovered from Humans, Food, and Recreational Waters in Rio de Janeiro, Brazil.

de Sousa VS, da-Silva APS, Sorenson L, Paschoal RP, Rabello RF, Campana EH, Pinheiro MS, Dos Santos LOF, Martins N, Botelho ACN, Picão RC, Fracalanzza SEL, Riley LW, Sensabaugh G, Moreira BM.

Int J Microbiol. 2017;2017:4287547. doi: 10.1155/2017/4287547. Epub 2017 May 24.


Pneumococcal carriage among children after four years of routine 10-valent pneumococcal conjugate vaccine use in Brazil: The emergence of multidrug resistant serotype 6C.

Neves FPG, Cardoso NT, Snyder RE, Marlow MA, Cardoso CAA, Teixeira LM, Riley LW.

Vaccine. 2017 May 15;35(21):2794-2800. doi: 10.1016/j.vaccine.2017.04.019. Epub 2017 Apr 18.


Genomic Analysis of Factors Associated with Low Prevalence of Antibiotic Resistance in Extraintestinal Pathogenic Escherichia coli Sequence Type 95 Strains.

Stephens CM, Adams-Sapper S, Sekhon M, Johnson JR, Riley LW.

mSphere. 2017 Apr 5;2(2). pii: e00390-16. doi: 10.1128/mSphere.00390-16. eCollection 2017 Mar-Apr.


Zika: A scourge in urban slums.

Snyder RE, Boone CE, Cardoso CA, Aguiar-Alves F, Neves FP, Riley LW.

PLoS Negl Trop Dis. 2017 Mar 23;11(3):e0005287. doi: 10.1371/journal.pntd.0005287. eCollection 2017 Mar. No abstract available.


Bacterial immunostat: Mycobacterium tuberculosis lipids and their role in the host immune response.

Queiroz A, Riley LW.

Rev Soc Bras Med Trop. 2017 Jan-Feb;50(1):9-18. doi: 10.1590/0037-8682-0230-2016. Review.


Comparison of culture-dependent and culture-independent molecular methods for characterization of vaginal microflora.

Pandya S, Ravi K, Srinivas V, Jadhav S, Khan A, Arun A, Riley LW, Madhivanan P.

J Med Microbiol. 2017 Mar;66(2):149-153. doi: 10.1099/jmm.0.000407.


Escherichia coli sequence type 73 as a cause of community acquired urinary tract infection in men and women in Rio de Janeiro, Brazil.

de Souza da-Silva AP, de Sousa VS, Martins N, da Silva Dias RC, Bonelli RR, Riley LW, Moreira BM.

Diagn Microbiol Infect Dis. 2017 May;88(1):69-74. doi: 10.1016/j.diagmicrobio.2017.01.024. Epub 2017 Feb 7.


Subcellular Partitioning and Intramacrophage Selectivity of Antimicrobial Compounds against Mycobacterium tuberculosis.

Schump MD, Fox DM, Bertozzi CR, Riley LW.

Antimicrob Agents Chemother. 2017 Feb 23;61(3). pii: e01639-16. doi: 10.1128/AAC.01639-16. Print 2017 Mar.


In utero cytomegalovirus infection and development of childhood acute lymphoblastic leukemia.

Francis SS, Wallace AD, Wendt GA, Li L, Liu F, Riley LW, Kogan S, Walsh KM, de Smith AJ, Dahl GV, Ma X, Delwart E, Metayer C, Wiemels JL.

Blood. 2017 Mar 23;129(12):1680-1684. doi: 10.1182/blood-2016-07-723148. Epub 2016 Dec 15.


Clinical and epidemiological characteristics associated with unfavorable tuberculosis treatment outcomes in TB-HIV co-infected patients in Brazil: a hierarchical polytomous analysis.

Prado TN, Rajan JV, Miranda AE, Dias ED, Cosme LB, Possuelo LG, Sanchez MN, Golub JE, Riley LW, Maciel EL.

Braz J Infect Dis. 2017 Mar - Apr;21(2):162-170. doi: 10.1016/j.bjid.2016.11.006. Epub 2016 Dec 6.


Understanding the barriers to successful adoption and use of a mobile health information system in a community health center in São Paulo, Brazil: a cohort study.

Rajan JV, Moura J, Gourley G, Kiso K, Sizilio A, Cortez AM, Riley LW, Veras MA, Sarkar U.

BMC Med Inform Decis Mak. 2016 Nov 17;16(1):146.


Genotyping Oral Commensal Bacteria to Predict Social Contact and Structure.

Francis SS, Plucinski MM, Wallace AD, Riley LW.

PLoS One. 2016 Sep 29;11(9):e0160201. doi: 10.1371/journal.pone.0160201. eCollection 2016.


Risk factors for differential outcome following directly observed treatment (DOT) of slum and non-slum tuberculosis patients: a retrospective cohort study.

Snyder RE, Marlow MA, Phuphanich ME, Riley LW, Maciel EL.

BMC Infect Dis. 2016 Sep 20;16:494. doi: 10.1186/s12879-016-1835-1.


Immunoglobulin G response to mammalian cell entry 1A (Mce1A) protein as biomarker of active tuberculosis.

Takenami I, de Oliveira CC, Lima FR, Soares J, Machado A Jr, Riley LW, Arruda S.

Tuberculosis (Edinb). 2016 Sep;100:82-88. doi: 10.1016/ Epub 2016 Jul 27.


The National Institutes of Health Fogarty International Center Global Health Scholars and Fellows Program: Collaborating Across Five Consortia to Strengthen Research Training.

Zunt JR, Chi BH, Heimburger DC, Cohen CR, Strathdee S, Hobbs N, Thomas Y, Bale K, Salisbury K, Hernandez MT, Riley LW, Vermund SH, van der Horst C.

Am J Trop Med Hyg. 2016 Sep 7;95(3):728-34. doi: 10.4269/ajtmh.16-0190. Epub 2016 Jul 5.


A new trilocus sequence-based multiplex-PCR to detect major Acinetobacter baumannii clones.

Martins N, Picão RC, Cerqueira-Alves M, Uehara A, Barbosa LC, Riley LW, Moreira BM.

Infect Genet Evol. 2016 Aug;42:41-5. doi: 10.1016/j.meegid.2016.04.031. Epub 2016 Apr 25.


Detection of drug resistance in Mycobacterium tuberculosis.

Riley LW.

Germs. 2016 Mar 1;6(1):7-9. doi: 10.11599/germs.2016.1082. eCollection 2016 Mar. No abstract available.


Complete Genome Sequences of Four Escherichia coli ST95 Isolates from Bloodstream Infections.

Stephens CM, Skerker JM, Sekhon MS, Arkin AP, Riley LW.

Genome Announc. 2015 Nov 5;3(6). pii: e01241-15. doi: 10.1128/genomeA.01241-15.


Directly observed therapy of tuberculosis in Brazil: associated determinants and impact on treatment outcome.

Reis-Santos B, Pellacani-Posses I, Macedo LR, Golub JE, Riley LW, Maciel EL.

Int J Tuberc Lung Dis. 2015 Oct;19(10):1188-93. doi: 10.5588/ijtld.14.0776.


Comparative metabolic profiling of mce1 operon mutant vs wild-type Mycobacterium tuberculosis strains.

Queiroz A, Medina-Cleghorn D, Marjanovic O, Nomura DK, Riley LW.

Pathog Dis. 2015 Nov;73(8):ftv066. doi: 10.1093/femspd/ftv066. Epub 2015 Aug 28.

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