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Items: 30

1.

The membrane-associated fraction of cyclase associate protein 1 translocates to the cytosol upon platelet stimulation.

Joshi P, Riley DRJ, Khalil JS, Xiong H, Ji W, Rivero F.

Sci Rep. 2018 Jul 17;8(1):10804. doi: 10.1038/s41598-018-29151-w.

2.

Diabetic Neuropathy and Gait: A Review.

Alam U, Riley DR, Jugdey RS, Azmi S, Rajbhandari S, D'Août K, Malik RA.

Diabetes Ther. 2017 Dec;8(6):1253-1264. doi: 10.1007/s13300-017-0295-y. Epub 2017 Sep 1. Review.

3.

Personalized genomic analyses for cancer mutation discovery and interpretation.

Jones S, Anagnostou V, Lytle K, Parpart-Li S, Nesselbush M, Riley DR, Shukla M, Chesnick B, Kadan M, Papp E, Galens KG, Murphy D, Zhang T, Kann L, Sausen M, Angiuoli SV, Diaz LA Jr, Velculescu VE.

Sci Transl Med. 2015 Apr 15;7(283):283ra53. doi: 10.1126/scitranslmed.aaa7161.

4.

Ten years of pan-genome analyses.

Vernikos G, Medini D, Riley DR, Tettelin H.

Curr Opin Microbiol. 2015 Feb;23:148-54. doi: 10.1016/j.mib.2014.11.016. Epub 2014 Dec 5. Review.

PMID:
25483351
5.

Notch1 mutations are drivers of oral tumorigenesis.

Izumchenko E, Sun K, Jones S, Brait M, Agrawal N, Koch W, McCord CL, Riley DR, Angiuoli SV, Velculescu VE, Jiang WW, Sidransky D.

Cancer Prev Res (Phila). 2015 Apr;8(4):277-286. doi: 10.1158/1940-6207.CAPR-14-0257. Epub 2014 Nov 18.

6.

Parallel evolution of Streptococcus pneumoniae and Streptococcus mitis to pathogenic and mutualistic lifestyles.

Kilian M, Riley DR, Jensen A, Brüggemann H, Tettelin H.

MBio. 2014 Jul 22;5(4):e01490-14. doi: 10.1128/mBio.01490-14.

7.

Inter- and intra-specific pan-genomes of Borrelia burgdorferi sensu lato: genome stability and adaptive radiation.

Mongodin EF, Casjens SR, Bruno JF, Xu Y, Drabek EF, Riley DR, Cantarel BL, Pagan PE, Hernandez YA, Vargas LC, Dunn JJ, Schutzer SE, Fraser CM, Qiu WG, Luft BJ.

BMC Genomics. 2013 Oct 10;14:693. doi: 10.1186/1471-2164-14-693.

8.

Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayi.

Ioannidis P, Johnston KL, Riley DR, Kumar N, White JR, Olarte KT, Ott S, Tallon LJ, Foster JM, Taylor MJ, Dunning Hotopp JC.

BMC Genomics. 2013 Sep 22;14:639. doi: 10.1186/1471-2164-14-639.

9.

Genome Sequences of Two Pathogenic Streptococcus agalactiae Isolates from the One-Humped Camel Camelus dromedarius.

Zubair S, de Villiers EP, Younan M, Andersson G, Tettelin H, Riley DR, Jores J, Bongcam-Rudloff E, Bishop RP.

Genome Announc. 2013 Jul 18;1(4). pii: e00515-13. doi: 10.1128/genomeA.00515-13.

10.

Bacteria-human somatic cell lateral gene transfer is enriched in cancer samples.

Riley DR, Sieber KB, Robinson KM, White JR, Ganesan A, Nourbakhsh S, Dunning Hotopp JC.

PLoS Comput Biol. 2013;9(6):e1003107. doi: 10.1371/journal.pcbi.1003107. Epub 2013 Jun 20.

11.

Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells.

Kimaro Mlacha SZ, Romero-Steiner S, Hotopp JC, Kumar N, Ishmael N, Riley DR, Farooq U, Creasy TH, Tallon LJ, Liu X, Goldsmith CS, Sampson J, Carlone GM, Hollingshead SK, Scott JA, Tettelin H.

BMC Genomics. 2013 Jun 9;14:383. doi: 10.1186/1471-2164-14-383.

12.

Transcriptional adaptation of pneumococci and human pharyngeal cells in the presence of a virus infection.

Kimaro Mlacha SZ, Peret TC, Kumar N, Romero-Steiner S, Dunning Hotopp JC, Ishmael N, Grinblat-Huse V, Riley DR, Erdman DD, Carlone GM, Sampson J, Scott JA, Tettelin H.

BMC Genomics. 2013 Jun 7;14:378. doi: 10.1186/1471-2164-14-378.

13.

Genomic insights into the emerging human pathogen Mycobacterium massiliense.

Tettelin H, Sampaio EP, Daugherty SC, Hine E, Riley DR, Sadzewicz L, Sengamalay N, Shefchek K, Su Q, Tallon LJ, Conville P, Olivier KN, Holland SM, Fraser CM, Zelazny AM.

J Bacteriol. 2012 Oct;194(19):5450. doi: 10.1128/JB.01200-12.

14.

Whole genome sequencing to investigate the emergence of clonal complex 23 Neisseria meningitidis serogroup Y disease in the United States.

Krauland MG, Dunning Hotopp JC, Riley DR, Daugherty SC, Marsh JW, Messonnier NE, Mayer LW, Tettelin H, Harrison LH.

PLoS One. 2012;7(4):e35699. doi: 10.1371/journal.pone.0035699. Epub 2012 Apr 27.

15.

Using Sybil for interactive comparative genomics of microbes on the web.

Riley DR, Angiuoli SV, Crabtree J, Dunning Hotopp JC, Tettelin H.

Bioinformatics. 2012 Jan 15;28(2):160-6. doi: 10.1093/bioinformatics/btr652. Epub 2011 Nov 24.

16.

Whole-genome association study on tissue tropism phenotypes in group A Streptococcus.

Bessen DE, Kumar N, Hall GS, Riley DR, Luo F, Lizano S, Ford CN, McShan WM, Nguyen SV, Dunning Hotopp JC, Tettelin H.

J Bacteriol. 2011 Dec;193(23):6651-63. doi: 10.1128/JB.05263-11. Epub 2011 Sep 23.

17.

CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing.

Angiuoli SV, Matalka M, Gussman A, Galens K, Vangala M, Riley DR, Arze C, White JR, White O, Fricke WF.

BMC Bioinformatics. 2011 Aug 30;12:356. doi: 10.1186/1471-2105-12-356.

18.

Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319.

Eppinger M, Bunk B, Johns MA, Edirisinghe JN, Kutumbaka KK, Koenig SS, Creasy HH, Rosovitz MJ, Riley DR, Daugherty S, Martin M, Elbourne LD, Paulsen I, Biedendieck R, Braun C, Grayburn S, Dhingra S, Lukyanchuk V, Ball B, Ul-Qamar R, Seibel J, Bremer E, Jahn D, Ravel J, Vary PS.

J Bacteriol. 2011 Aug;193(16):4199-213. doi: 10.1128/JB.00449-11. Epub 2011 Jun 24.

19.

Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination.

Budroni S, Siena E, Dunning Hotopp JC, Seib KL, Serruto D, Nofroni C, Comanducci M, Riley DR, Daugherty SC, Angiuoli SV, Covacci A, Pizza M, Rappuoli R, Moxon ER, Tettelin H, Medini D.

Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4494-9. doi: 10.1073/pnas.1019751108. Epub 2011 Feb 28.

20.

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species.

Donati C, Hiller NL, Tettelin H, Muzzi A, Croucher NJ, Angiuoli SV, Oggioni M, Dunning Hotopp JC, Hu FZ, Riley DR, Covacci A, Mitchell TJ, Bentley SD, Kilian M, Ehrlich GD, Rappuoli R, Moxon ER, Masignani V.

Genome Biol. 2010;11(10):R107. doi: 10.1186/gb-2010-11-10-r107. Epub 2010 Oct 29. Erratum in: Genome Biol. 2011;12(10):140.

21.

Pyrosequencing-based comparative genome analysis of the nosocomial pathogen Enterococcus faecium and identification of a large transferable pathogenicity island.

van Schaik W, Top J, Riley DR, Boekhorst J, Vrijenhoek JE, Schapendonk CM, Hendrickx AP, Nijman IJ, Bonten MJ, Tettelin H, Willems RJ.

BMC Genomics. 2010 Apr 14;11:239. doi: 10.1186/1471-2164-11-239.

22.

Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium.

Eppinger M, Worsham PL, Nikolich MP, Riley DR, Sebastian Y, Mou S, Achtman M, Lindler LE, Ravel J.

J Bacteriol. 2010 Mar;192(6):1685-99. doi: 10.1128/JB.01518-09. Epub 2010 Jan 8.

23.

Study of a loop heat pipe using neutron radiography.

Cimbala JM, Brenizer JS, Chuang AP, Hanna S, Thomas Conroy C, El-Ganayni AA, Riley DR.

Appl Radiat Isot. 2004 Oct;61(4):701-5.

PMID:
15246420
24.

Functional and structural adaptations of skeletal muscle to microgravity.

Fitts RH, Riley DR, Widrick JJ.

J Exp Biol. 2001 Sep;204(Pt 18):3201-8. Review.

25.

Physiology of a microgravity environment invited review: microgravity and skeletal muscle.

Fitts RH, Riley DR, Widrick JJ.

J Appl Physiol (1985). 2000 Aug;89(2):823-39. Review.

26.

CAD/CAM for dental restorations--some of the curious challenges.

Rekow ED, Erdman AG, Riley DR, Klamecki B.

IEEE Trans Biomed Eng. 1991 Apr;38(4):314-8. Review.

PMID:
1855790
28.

Influence of zinc and vitamin D on plasma amino acids and liver xanthine oxidase in rats.

Riley DR, Harrill I, Gifford ED.

J Nutr. 1969 Jul;98(3):351-5. No abstract available.

PMID:
5306266
29.

Comparison of results of two simulations employing full-size visual cues for pilot-controlled Gemini-Agena docking. NASA TN D-3687.

Riley DR, Jaquet BM, Pennington JE, Brissenden RF.

Tech Note U S Natl Aeronaut Space Adm. 1967 Feb:1-35. No abstract available.

PMID:
5297979
30.

A FIXED-BASE VISUAL-SIMULATOR STUDY OF PILOT CONTROL OF ORBITAL DOCKING OF ATTITUDE-STABILIZED VEHICLES. TECHN NOTE D-2036.

RILEY DR, SUIT WT.

NASA Contract Rep NASA CR. 1964 Jan:1-44. No abstract available.

PMID:
14131281

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