Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 72

1.

Membrane Lipid Composition of the Moderately Thermophilic Ammonia-Oxidizing Archaeon "Candidatus Nitrosotenuis uzonensis" at Different Growth Temperatures.

Bale NJ, Palatinszky M, Rijpstra WIC, Herbold CW, Wagner M, Sinninghe Damsté JS.

Appl Environ Microbiol. 2019 Oct 1;85(20). pii: e01332-19. doi: 10.1128/AEM.01332-19. Print 2019 Oct 15.

2.

Fatty Acid and Hopanoid Adaption to Cold in the Methanotroph Methylovulum psychrotolerans.

Bale NJ, Rijpstra WIC, Sahonero-Canavesi DX, Oshkin IY, Belova SE, Dedysh SN, Sinninghe Damsté JS.

Front Microbiol. 2019 Apr 5;10:589. doi: 10.3389/fmicb.2019.00589. eCollection 2019.

3.

New Insights Into the Polar Lipid Composition of Extremely Halo(alkali)philic Euryarchaea From Hypersaline Lakes.

Bale NJ, Sorokin DY, Hopmans EC, Koenen M, Rijpstra WIC, Villanueva L, Wienk H, Sinninghe Damsté JS.

Front Microbiol. 2019 Mar 12;10:377. doi: 10.3389/fmicb.2019.00377. eCollection 2019.

4.

Granulicella sibirica sp. nov., a psychrotolerant acidobacterium isolated from an organic soil layer in forested tundra, West Siberia.

Oshkin IY, Kulichevskaya IS, Rijpstra WIC, Sinninghe Damsté JS, Rakitin AL, Ravin NV, Dedysh SN.

Int J Syst Evol Microbiol. 2019 Apr;69(4):1195-1201. doi: 10.1099/ijsem.0.003290. Epub 2019 Feb 18.

PMID:
30775959
5.

Methanonatronarchaeum thermophilum gen. nov., sp. nov. and 'Candidatus Methanohalarchaeum thermophilum', extremely halo(natrono)philic methyl-reducing methanogens from hypersaline lakes comprising a new euryarchaeal class Methanonatronarchaeia classis nov.

Sorokin DY, Merkel AY, Abbas B, Makarova KS, Rijpstra WIC, Koenen M, Sinninghe Damsté JS, Galinski EA, Koonin EV, van Loosdrecht MCM.

Int J Syst Evol Microbiol. 2018 Jul;68(7):2199-2208. doi: 10.1099/ijsem.0.002810. Epub 2018 May 29.

PMID:
29781801
6.

Edaphobacter lichenicola sp. nov., a member of the family Acidobacteriaceae from lichen-dominated forested tundra.

Belova SE, Suzina NE, Rijpstra WIC, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2018 Feb 21. doi: 10.1099/ijsem.0.002663. [Epub ahead of print]

PMID:
29465339
7.

Oleiharenicola alkalitolerans gen. nov., sp. nov., a new member of the phylum Verrucomicrobia isolated from an oilsands tailings pond.

Rochman FF, Kim JJ, Rijpstra WIC, Sinninghe Damsté JS, Schumann P, Verbeke TJ, Dunfield PF.

Int J Syst Evol Microbiol. 2018 Feb 20. doi: 10.1099/ijsem.0.002624. [Epub ahead of print]

PMID:
29461179
8.

Tundrisphaera lichenicola gen. nov., sp. nov., a psychrotolerant representative of the family Isosphaeraceae from lichen-dominated tundra soils.

Kulichevskaya IS, Ivanova AA, Detkova EN, Rijpstra WIC, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3583-3589. doi: 10.1099/ijsem.0.002172. Epub 2017 Aug 22.

PMID:
28829024
9.

Pheno- and Genotyping of Hopanoid Production in Acidobacteria.

Damsté JSS, Rijpstra WIC, Dedysh SN, Foesel BU, Villanueva L.

Front Microbiol. 2017 Jun 8;8:968. doi: 10.3389/fmicb.2017.00968. eCollection 2017.

10.

Actinocrinis puniceicyclus gen. nov., sp. nov., an actinobacterium isolated from an acidic spring.

Kim JJ, Marjerrison CE, Cornish Shartau SL, Brady AL, Sharp CE, Rijpstra WIC, Sinninghe Damsté JS, Schumann P, Grasby SE, Dunfield PF.

Int J Syst Evol Microbiol. 2017 Mar;67(3):602-609. doi: 10.1099/ijsem.0.001667. Epub 2017 Apr 3.

PMID:
27902294
11.

Fimbriiglobus ruber gen. nov., sp. nov., a Gemmata-like planctomycete from Sphagnum peat bog and the proposal of Gemmataceae fam. nov.

Kulichevskaya IS, Ivanova AA, Baulina OI, Rijpstra WI, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2017 Feb;67(2):218-224. doi: 10.1099/ijsem.0.001598. Epub 2017 Mar 16.

PMID:
27902209
12.

A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment.

Jung MY, Kim JG, Sinninghe Damsté JS, Rijpstra WI, Madsen EL, Kim SJ, Hong H, Si OJ, Kerou M, Schleper C, Rhee SK.

Environ Microbiol Rep. 2016 Dec;8(6):983-992. doi: 10.1111/1758-2229.12477. Epub 2016 Oct 24.

PMID:
27700018
13.

Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea.

Kim JG, Park SJ, Sinninghe Damsté JS, Schouten S, Rijpstra WI, Jung MY, Kim SJ, Gwak JH, Hong H, Si OJ, Lee S, Madsen EL, Rhee SK.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7888-93. doi: 10.1073/pnas.1605501113. Epub 2016 Jun 23.

14.

Elucidation and identification of amino acid containing membrane lipids using liquid chromatography/high-resolution mass spectrometry.

Moore EK, Hopmans EC, Rijpstra WI, Villanueva L, Damsté JS.

Rapid Commun Mass Spectrom. 2016 Mar 30;30(6):739-50.

PMID:
27281845
15.

Methylovulum psychrotolerans sp. nov., a cold-adapted methanotroph from low-temperature terrestrial environments, and emended description of the genus Methylovulum.

Oshkin IY, Belova SE, Danilova OV, Miroshnikov KK, Rijpstra WI, Sinninghe Damsté JS, Liesack W, Dedysh SN.

Int J Syst Evol Microbiol. 2016 Jun;66(6):2417-23. doi: 10.1099/ijsem.0.001046. Epub 2016 Mar 31.

PMID:
27031985
16.

Halanaeroarchaeum sulfurireducens gen. nov., sp. nov., the first obligately anaerobic sulfur-respiring haloarchaeon, isolated from a hypersaline lake.

Sorokin DY, Kublanov IV, Yakimov MM, Rijpstra WI, Sinninghe Damsté JS.

Int J Syst Evol Microbiol. 2016 Jun;66(6):2377-81. doi: 10.1099/ijsem.0.001041. Epub 2016 Mar 31.

PMID:
27031647
17.

Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov.

Kulichevskaya IS, Ivanova AA, Suzina NE, Rijpstra WIC, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2016 Feb;66(2):837-844. doi: 10.1099/ijsem.0.000799. Epub 2015 Nov 26.

PMID:
26611145
18.

Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids.

Quemin ER, Pietilä MK, Oksanen HM, Forterre P, Rijpstra WI, Schouten S, Bamford DH, Prangishvili D, Krupovic M.

J Virol. 2015 Nov;89(22):11681-91. doi: 10.1128/JVI.02270-15. Epub 2015 Sep 9.

19.

Methanosalsum natronophilum sp. nov., and Methanocalculus alkaliphilus sp. nov., haloalkaliphilic methanogens from hypersaline soda lakes.

Sorokin DY, Abbas B, Merkel AY, Rijpstra WI, Damsté JS, Sukhacheva MV, van Loosdrecht MC.

Int J Syst Evol Microbiol. 2015 Oct;65(10):3739-45. doi: 10.1099/ijsem.0.000488. Epub 2015 Jul 29.

PMID:
26228570
20.

Lysine and novel hydroxylysine lipids in soil bacteria: amino acid membrane lipid response to temperature and pH in Pseudopedobacter saltans.

Moore EK, Hopmans EC, Rijpstra WI, Sánchez-Andrea I, Villanueva L, Wienk H, Schoutsen F, Stams AJ, Sinninghe Damsté JS.

Front Microbiol. 2015 Jun 29;6:637. doi: 10.3389/fmicb.2015.00637. eCollection 2015.

21.

Abundant Trimethylornithine Lipids and Specific Gene Sequences Are Indicative of Planctomycete Importance at the Oxic/Anoxic Interface in Sphagnum-Dominated Northern Wetlands.

Moore EK, Villanueva L, Hopmans EC, Rijpstra WI, Mets A, Dedysh SN, Sinninghe Damsté JS.

Appl Environ Microbiol. 2015 Sep;81(18):6333-44. doi: 10.1128/AEM.00324-15. Epub 2015 Jul 6.

22.

Planctomicrobium piriforme gen. nov., sp. nov., a stalked planctomycete from a littoral wetland of a boreal lake.

Kulichevskaya IS, Ivanova AA, Detkova EN, Rijpstra WI, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2015 May;65(Pt 5):1659-65. doi: 10.1099/ijs.0.000154. Epub 2015 Feb 27.

PMID:
25724745
23.

Isolation and characterization of a prokaryotic cell organelle from the anammox bacterium Kuenenia stuttgartiensis.

Neumann S, Wessels HJ, Rijpstra WI, Sinninghe Damsté JS, Kartal B, Jetten MS, van Niftrik L.

Mol Microbiol. 2014 Nov;94(4):794-802. doi: 10.1111/mmi.12816. Epub 2014 Oct 22.

24.

Ether- and ester-bound iso-diabolic acid and other lipids in members of acidobacteria subdivision 4.

Sinninghe Damsté JS, Rijpstra WI, Hopmans EC, Foesel BU, Wüst PK, Overmann J, Tank M, Bryant DA, Dunfield PF, Houghton K, Stott MB.

Appl Environ Microbiol. 2014 Sep;80(17):5207-18. doi: 10.1128/AEM.01066-14. Epub 2014 Jun 13.

25.

Paludibaculum fermentans gen. nov., sp. nov., a facultative anaerobe capable of dissimilatory iron reduction from subdivision 3 of the Acidobacteria.

Kulichevskaya IS, Suzina NE, Rijpstra WI, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2014 Aug;64(Pt 8):2857-64. doi: 10.1099/ijs.0.066175-0. Epub 2014 May 27.

PMID:
24867171
26.

Ercella succinigenes gen. nov., sp. nov., an anaerobic succinate-producing bacterium.

van Gelder AH, Sousa DZ, Rijpstra WI, Damsté JS, Stams AJ, Sánchez-Andrea I.

Int J Syst Evol Microbiol. 2014 Jul;64(Pt 7):2449-54. doi: 10.1099/ijs.0.058966-0. Epub 2014 Apr 28.

PMID:
24776531
27.

Genetic biomarkers of the sterol-biosynthetic pathway in microalgae.

Villanueva L, Rijpstra WI, Schouten S, Damsté JS.

Environ Microbiol Rep. 2014 Feb;6(1):35-44. doi: 10.1111/1758-2229.12106. Epub 2013 Oct 17.

PMID:
24596261
28.

Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi.

Sorokin DY, Vejmelkova D, Lücker S, Streshinskaya GM, Rijpstra WI, Sinninghe Damsté JS, Kleerbezem R, van Loosdrecht M, Muyzer G, Daims H.

Int J Syst Evol Microbiol. 2014 Jun;64(Pt 6):1859-65. doi: 10.1099/ijs.0.062232-0. Epub 2014 Feb 26.

PMID:
24573161
29.

Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils.

Crowe MA, Power JF, Morgan XC, Dunfield PF, Lagutin K, Rijpstra IC, Vyssotski GN, Sinninghe Damste JS, Houghton KM, Ryan JL, Stott MB.

Int J Syst Evol Microbiol. 2014 Jan;64(Pt 1):220-7. doi: 10.1099/ijs.0.055079-0. Epub 2013 Sep 18. Erratum in: Int J Syst Evol Microbiol. 2014 Mar;64(Pt 3):1074. Rijpstra, W I C [removed]; Vyssotski, G N S [added].

PMID:
24048862
30.

Novel mono-, di-, and trimethylornithine membrane lipids in northern wetland planctomycetes.

Moore EK, Hopmans EC, Rijpstra WI, Villanueva L, Dedysh SN, Kulichevskaya IS, Wienk H, Schoutsen F, Sinninghe Damsté JS.

Appl Environ Microbiol. 2013 Nov;79(22):6874-84. doi: 10.1128/AEM.02169-13. Epub 2013 Aug 30.

31.

Thermoanaerobaculum aquaticum gen. nov., sp. nov., the first cultivated member of Acidobacteria subdivision 23, isolated from a hot spring.

Losey NA, Stevenson BS, Busse HJ, Sinninghe Damsté JS, Rijpstra WI, Rudd S, Lawson PA.

Int J Syst Evol Microbiol. 2013 Nov;63(Pt 11):4149-57. doi: 10.1099/ijs.0.051425-0. Epub 2013 Jun 14.

PMID:
23771620
32.

On the potential application of polar and temperate marine microalgae for EPA and DHA production.

Boelen P, van Dijk R, Sinninghe Damsté JS, Rijpstra WI, Buma AG.

AMB Express. 2013 May 14;3(1):26. doi: 10.1186/2191-0855-3-26.

33.

Rare branched fatty acids characterize the lipid composition of the intra-aerobic methane oxidizer "Candidatus Methylomirabilis oxyfera".

Kool DM, Zhu B, Rijpstra WI, Jetten MS, Ettwig KF, Sinninghe Damsté JS.

Appl Environ Microbiol. 2012 Dec;78(24):8650-6. doi: 10.1128/AEM.02099-12. Epub 2012 Oct 5.

34.

Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids of group I.1a and I.1b thaumarchaeota in soil.

Damsté JS, Rijpstra WI, Hopmans EC, Jung MY, Kim JG, Rhee SK, Stieglmeier M, Schleper C.

Appl Environ Microbiol. 2012 Oct;78(19):6866-74. doi: 10.1128/AEM.01681-12. Epub 2012 Jul 20.

35.

Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi.

Sorokin DY, Lücker S, Vejmelkova D, Kostrikina NA, Kleerebezem R, Rijpstra WI, Damsté JS, Le Paslier D, Muyzer G, Wagner M, van Loosdrecht MC, Daims H.

ISME J. 2012 Dec;6(12):2245-56. doi: 10.1038/ismej.2012.70. Epub 2012 Jul 5.

36.

Chryseolinea serpens gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil.

Kim JJ, Alkawally M, Brady AL, Rijpstra WI, Sinninghe Damsté JS, Dunfield PF.

Int J Syst Evol Microbiol. 2013 Feb;63(Pt 2):654-60. doi: 10.1099/ijs.0.039404-0. Epub 2012 Apr 27.

PMID:
22544793
37.

Telmatocola sphagniphila gen. nov., sp. nov., a novel dendriform planctomycete from northern wetlands.

Kulichevskaya IS, Serkebaeva YM, Kim Y, Rijpstra WI, Damsté JS, Liesack W, Dedysh SN.

Front Microbiol. 2012 Apr 17;3:146. doi: 10.3389/fmicb.2012.00146. eCollection 2012.

38.

Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil.

Kim JG, Jung MY, Park SJ, Rijpstra WI, Sinninghe Damsté JS, Madsen EL, Min D, Kim JS, Kim GJ, Rhee SK.

Environ Microbiol. 2012 Jun;14(6):1528-43. doi: 10.1111/j.1462-2920.2012.02740.x. Epub 2012 Apr 20.

PMID:
22515152
39.

Identification of the bacteriochlorophylls, carotenoids, quinones, lipids, and hopanoids of "Candidatus Chloracidobacterium thermophilum".

Garcia Costas AM, Tsukatani Y, Rijpstra WI, Schouten S, Welander PV, Summons RE, Bryant DA.

J Bacteriol. 2012 Mar;194(5):1158-68. doi: 10.1128/JB.06421-11. Epub 2011 Dec 30.

40.

Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil.

Jung MY, Park SJ, Min D, Kim JS, Rijpstra WI, Sinninghe Damsté JS, Kim GJ, Madsen EL, Rhee SK.

Appl Environ Microbiol. 2011 Dec;77(24):8635-47. doi: 10.1128/AEM.05787-11. Epub 2011 Oct 14.

41.

Preservation potential of ancient plankton DNA in Pleistocene marine sediments.

Boere AC, Rijpstra WI, De Lange GJ, Sinninghe Damsté JS, Coolen MJ.

Geobiology. 2011 Sep;9(5):377-93. doi: 10.1111/j.1472-4669.2011.00290.x.

PMID:
21884361
42.

Acidicapsa borealis gen. nov., sp. nov. and Acidicapsa ligni sp. nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood.

Kulichevskaya IS, Kostina LA, Valásková V, Rijpstra WI, Damsté JS, de Boer W, Dedysh SN.

Int J Syst Evol Microbiol. 2012 Jul;62(Pt 7):1512-20. doi: 10.1099/ijs.0.034819-0. Epub 2011 Aug 19.

PMID:
21856984
43.

Bryocella elongata gen. nov., sp. nov., a member of subdivision 1 of the Acidobacteria isolated from a methanotrophic enrichment culture, and emended description of Edaphobacter aggregans Koch et al. 2008.

Dedysh SN, Kulichevskaya IS, Serkebaeva YM, Mityaeva MA, Sorokin VV, Suzina NE, Rijpstra WI, Damsté JS.

Int J Syst Evol Microbiol. 2012 Mar;62(Pt 3):654-64. doi: 10.1099/ijs.0.031898-0. Epub 2011 May 6.

PMID:
21551329
44.

13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3.

Damsté JS, Rijpstra WI, Hopmans EC, Weijers JW, Foesel BU, Overmann J, Dedysh SN.

Appl Environ Microbiol. 2011 Jun;77(12):4147-54. doi: 10.1128/AEM.00466-11. Epub 2011 Apr 22.

45.

Singulisphaera rosea sp. nov., a planctomycete from acidic Sphagnum peat, and emended description of the genus Singulisphaera.

Kulichevskaya IS, Detkova EN, Bodelier PL, Rijpstra WI, Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2012 Jan;62(Pt 1):118-23. doi: 10.1099/ijs.0.025924-0. Epub 2011 Feb 18.

PMID:
21335501
46.

(Per)chlorate reduction by an acetogenic bacterium, Sporomusa sp., isolated from an underground gas storage.

Balk M, Mehboob F, van Gelder AH, Rijpstra WI, Damsté JS, Stams AJ.

Appl Microbiol Biotechnol. 2010 Sep;88(2):595-603. doi: 10.1007/s00253-010-2788-8. Epub 2010 Aug 3.

47.

Crenarchaeol dominates the membrane lipids of Candidatus Nitrososphaera gargensis, a thermophilic group I.1b Archaeon.

Pitcher A, Rychlik N, Hopmans EC, Spieck E, Rijpstra WI, Ossebaar J, Schouten S, Wagner M, Damsté JS.

ISME J. 2010 Apr;4(4):542-52. doi: 10.1038/ismej.2009.138. Epub 2009 Dec 24.

PMID:
20033067
48.

A strictly anaerobic betaproteobacterium Georgfuchsia toluolica gen. nov., sp. nov. degrades aromatic compounds with Fe(III), Mn(IV) or nitrate as an electron acceptor.

Weelink SA, van Doesburg W, Saia FT, Rijpstra WI, Röling WF, Smidt H, Stams AJ.

FEMS Microbiol Ecol. 2009 Dec;70(3):575-85. doi: 10.1111/j.1574-6941.2009.00778.x. Epub 2009 Sep 7.

49.

Late-Holocene succession of dinoflagellates in an Antarctic fjord using a multi-proxy approach: paleoenvironmental genomics, lipid biomarkers and palynomorphs.

Boere AC, Abbas B, Rijpstra WI, Versteegh GJ, Volkman JK, Sinninghe Damsté JS, Coolen MJ.

Geobiology. 2009 Jun;7(3):265-81. doi: 10.1111/j.1472-4669.2009.00202.x. Epub 2009 Jun 9.

PMID:
19515203
50.

Zavarzinella formosa gen. nov., sp. nov., a novel stalked, Gemmata-like planctomycete from a Siberian peat bog.

Kulichevskaya IS, Baulina OI, Bodelier PL, Rijpstra WI, Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2009 Feb;59(Pt 2):357-64. doi: 10.1099/ijs.0.002378-0.

PMID:
19196778

Supplemental Content

Loading ...
Support Center