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Items: 25


Bioinformatic Analysis of Chloroplast Gene Expression and RNA Posttranscriptional Maturations Using RNA Sequencing.

Malbert B, Rigaill G, Brunaud V, Lurin C, Delannoy E.

Methods Mol Biol. 2018;1829:279-294. doi: 10.1007/978-1-4939-8654-5_19.


LRP5 regulates the expression of STK40, a new potential target in triple-negative breast cancers.

Maubant S, Tahtouh T, Brisson A, Maire V, Némati F, Tesson B, Ye M, Rigaill G, Noizet M, Dumont A, Gentien D, Marty-Prouvost B, de Koning L, Mahmood SF, Decaudin D, Cruzalegui F, Tucker GC, Roman-Roman S, Dubois T.

Oncotarget. 2018 Apr 27;9(32):22586-22604. doi: 10.18632/oncotarget.25187. eCollection 2018 Apr 27.


Homoeologous exchanges cause extensive dosage-dependent gene expression changes in an allopolyploid crop.

Lloyd A, Blary A, Charif D, Charpentier C, Tran J, Balzergue S, Delannoy E, Rigaill G, Jenczewski E.

New Phytol. 2018 Jan;217(1):367-377. doi: 10.1111/nph.14836. Epub 2017 Oct 16.


Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria.

Guillaumot D, Lopez-Obando M, Baudry K, Avon A, Rigaill G, Falcon de Longevialle A, Broche B, Takenaka M, Berthomé R, De Jaeger G, Delannoy E, Lurin C.

Proc Natl Acad Sci U S A. 2017 Aug 15;114(33):8877-8882. doi: 10.1073/pnas.1705780114. Epub 2017 Jul 31.


Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts.

Brandenburg JT, Mary-Huard T, Rigaill G, Hearne SJ, Corti H, Joets J, Vitte C, Charcosset A, Nicolas SD, Tenaillon MI.

PLoS Genet. 2017 Mar 16;13(3):e1006666. doi: 10.1371/journal.pgen.1006666. eCollection 2017 Mar.


Unraveling the early molecular and physiological mechanisms involved in response to phenanthrene exposure.

Dumas AS, Taconnat L, Barbas E, Rigaill G, Catrice O, Bernard D, Benamar A, Macherel D, El Amrani A, Berthomé R.

BMC Genomics. 2016 Oct 21;17(1):818.


Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis.

Rigaill G, Balzergue S, Brunaud V, Blondet E, Rau A, Rogier O, Caius J, Maugis-Rabusseau C, Soubigou-Taconnat L, Aubourg S, Lurin C, Martin-Magniette ML, Delannoy E.

Brief Bioinform. 2018 Jan 1;19(1):65-76. doi: 10.1093/bib/bbw092.


TIPIN depletion leads to apoptosis in breast cancer cells.

Baldeyron C, Brisson A, Tesson B, Némati F, Koundrioukoff S, Saliba E, De Koning L, Martel E, Ye M, Rigaill G, Meseure D, Nicolas A, Gentien D, Decaudin D, Debatisse M, Depil S, Cruzalegui F, Pierré A, Roman-Roman S, Tucker GC, Dubois T.

Mol Oncol. 2015 Oct;9(8):1580-98. doi: 10.1016/j.molonc.2015.04.010. Epub 2015 May 9.


Transcriptome analysis of Wnt3a-treated triple-negative breast cancer cells.

Maubant S, Tesson B, Maire V, Ye M, Rigaill G, Gentien D, Cruzalegui F, Tucker GC, Roman-Roman S, Dubois T.

PLoS One. 2015 Apr 7;10(4):e0122333. doi: 10.1371/journal.pone.0122333. eCollection 2015.


GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response.

Zaag R, Tamby JP, Guichard C, Tariq Z, Rigaill G, Delannoy E, Renou JP, Balzergue S, Mary-Huard T, Aubourg S, Martin-Magniette ML, Brunaud V.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1010-7. doi: 10.1093/nar/gku1155. Epub 2014 Nov 11.


Performance evaluation of DNA copy number segmentation methods.

Pierre-Jean M, Rigaill G, Neuvial P.

Brief Bioinform. 2015 Jul;16(4):600-15. doi: 10.1093/bib/bbu026. Epub 2014 Sep 8.


Segmentor3IsBack: an R package for the fast and exact segmentation of Seq-data.

Cleynen A, Koskas M, Lebarbier E, Rigaill G, Robin S.

Algorithms Mol Biol. 2014 Mar 10;9(1):6. doi: 10.1186/1748-7188-9-6.


SegAnnDB: interactive Web-based genomic segmentation.

Hocking TD, Boeva V, Rigaill G, Schleiermacher G, Janoueix-Lerosey I, Delattre O, Richer W, Bourdeaut F, Suguro M, Seto M, Bach F, Vert JP.

Bioinformatics. 2014 Jun 1;30(11):1539-46. doi: 10.1093/bioinformatics/btu072. Epub 2014 Feb 3.


Genomic instability: a stronger prognostic marker than proliferation for early stage luminal breast carcinomas.

Vincent-Salomon A, Benhamo V, Gravier E, Rigaill G, Gruel N, Robin S, de Rycke Y, Mariani O, Pierron G, Gentien D, Reyal F, Cottu P, Fourquet A, Rouzier R, Sastre-Garau X, Delattre O.

PLoS One. 2013 Oct 15;8(10):e76496. doi: 10.1371/journal.pone.0076496. eCollection 2013.


Identifying subgroup markers in heterogeneous populations.

de Ronde JJ, Rigaill G, Rottenberg S, Rodenhuis S, Wessels LF.

Nucleic Acids Res. 2013 Nov;41(21):e200. doi: 10.1093/nar/gkt845. Epub 2013 Sep 22.


TTK/hMPS1 is an attractive therapeutic target for triple-negative breast cancer.

Maire V, Baldeyron C, Richardson M, Tesson B, Vincent-Salomon A, Gravier E, Marty-Prouvost B, De Koning L, Rigaill G, Dumont A, Gentien D, Barillot E, Roman-Roman S, Depil S, Cruzalegui F, Pierré A, Tucker GC, Dubois T.

PLoS One. 2013 May 20;8(5):e63712. doi: 10.1371/journal.pone.0063712. Print 2013.


Polo-like kinase 1: a potential therapeutic option in combination with conventional chemotherapy for the management of patients with triple-negative breast cancer.

Maire V, Némati F, Richardson M, Vincent-Salomon A, Tesson B, Rigaill G, Gravier E, Marty-Prouvost B, De Koning L, Lang G, Gentien D, Dumont A, Barillot E, Marangoni E, Decaudin D, Roman-Roman S, Pierré A, Cruzalegui F, Depil S, Tucker GC, Dubois T.

Cancer Res. 2013 Jan 15;73(2):813-23. doi: 10.1158/0008-5472.CAN-12-2633. Epub 2012 Nov 9.


A regression model for estimating DNA copy number applied to capture sequencing data.

Rigaill GJ, Cadot S, Kluin RJ, Xue Z, Bernards R, Majewski IJ, Wessels LF.

Bioinformatics. 2012 Sep 15;28(18):2357-65. doi: 10.1093/bioinformatics/bts448. Epub 2012 Jul 13.


Joint segmentation, calling, and normalization of multiple CGH profiles.

Picard F, Lebarbier E, Hoebeke M, Rigaill G, Thiam B, Robin S.

Biostatistics. 2011 Jul;12(3):413-28. doi: 10.1093/biostatistics/kxq076. Epub 2011 Jan 5.


Oxidative stress promotes myofibroblast differentiation and tumour spreading.

Toullec A, Gerald D, Despouy G, Bourachot B, Cardon M, Lefort S, Richardson M, Rigaill G, Parrini MC, Lucchesi C, Bellanger D, Stern MH, Dubois T, Sastre-Garau X, Delattre O, Vincent-Salomon A, Mechta-Grigoriou F.

EMBO Mol Med. 2010 Jun;2(6):211-30. doi: 10.1002/emmm.201000073.


Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.

Popova T, Manié E, Stoppa-Lyonnet D, Rigaill G, Barillot E, Stern MH.

Genome Biol. 2009;10(11):R128. doi: 10.1186/gb-2009-10-11-r128. Epub 2009 Nov 11.


Diaphanous-related formins are required for invadopodia formation and invasion of breast tumor cells.

Lizárraga F, Poincloux R, Romao M, Montagnac G, Le Dez G, Bonne I, Rigaill G, Raposo G, Chavrier P.

Cancer Res. 2009 Apr 1;69(7):2792-800. doi: 10.1158/0008-5472.CAN-08-3709. Epub 2009 Mar 10.


Frequent PTEN genomic alterations and activated phosphatidylinositol 3-kinase pathway in basal-like breast cancer cells.

Marty B, Maire V, Gravier E, Rigaill G, Vincent-Salomon A, Kappler M, Lebigot I, Djelti F, Tourdès A, Gestraud P, Hupé P, Barillot E, Cruzalegui F, Tucker GC, Stern MH, Thiery JP, Hickman JA, Dubois T.

Breast Cancer Res. 2008;10(6):R101. doi: 10.1186/bcr2204. Epub 2008 Dec 3.


ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays.

Rigaill G, Hupé P, Almeida A, La Rosa P, Meyniel JP, Decraene C, Barillot E.

Bioinformatics. 2008 Mar 15;24(6):768-74. doi: 10.1093/bioinformatics/btn048. Epub 2008 Feb 5.


High-resolution mapping of DNA breakpoints to define true recurrences among ipsilateral breast cancers.

Bollet MA, Servant N, Neuvial P, Decraene C, Lebigot I, Meyniel JP, De Rycke Y, Savignoni A, Rigaill G, Hupé P, Fourquet A, Sigal-Zafrani B, Barillot E, Thiery JP.

J Natl Cancer Inst. 2008 Jan 2;100(1):48-58. Epub 2007 Dec 25.


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