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Escherichia coli Can Adapt Its Protein Translocation Machinery for Enhanced Periplasmic Recombinant Protein Production.

Karyolaimos A, Dolata KM, Antelo-Varela M, Mestre Borras A, Elfageih R, Sievers S, Becher D, Riedel K, de Gier JW.

Front Bioeng Biotechnol. 2020 Jan 29;7:465. doi: 10.3389/fbioe.2019.00465. eCollection 2019.


Responses of Acidobacteria Granulicella sp. WH15 to High Carbon Revealed by Integrated Omics Analyses.

Costa OYA, Zerillo MM, Zühlke D, Kielak AM, Pijl A, Riedel K, Kuramae EE.

Microorganisms. 2020 Feb 12;8(2). pii: E244. doi: 10.3390/microorganisms8020244.


Analysis of calcium signaling in live human Tongue cell 3D-Cultures upon tastant perfusion.

von Molitor E, Nürnberg E, Ertongur-Fauth T, Scholz P, Riedel K, Hafner M, Rudolf R, Cesetti T.

Cell Calcium. 2020 Jan 23;87:102164. doi: 10.1016/j.ceca.2020.102164. [Epub ahead of print]


Non-invasive and label-free 3D-visualization shows in vivo oligomerization of the staphylococcal alkaline shock protein 23 (Asp23).

Petersen I, Schlüter R, Hoff KJ, Liebscher V, Bange G, Riedel K, Pané-Farré J.

Sci Rep. 2020 Jan 10;10(1):125. doi: 10.1038/s41598-019-56907-9.


A sulfur-containing volatile emitted by potato-associated bacteria confers protection against late blight through direct anti-oomycete activity.

Chinchilla D, Bruisson S, Meyer S, Zühlke D, Hirschfeld C, Joller C, L'Haridon F, Mène-Saffrané L, Riedel K, Weisskopf L.

Sci Rep. 2019 Dec 30;9(1):18778. doi: 10.1038/s41598-019-55218-3.


Model of persistent foot-and-mouth disease virus infection in multilayered cells derived from bovine dorsal soft palate.

Hägglund S, Laloy E, Näslund K, Pfaff F, Eschbaumer M, Romey A, Relmy A, Rikberg A, Svensson A, Huet H, Gorna K, Zühlke D, Riedel K, Beer M, Zientara S, Bakkali-Kassimi L, Blaise-Boisseau S, Valarcher JF.

Transbound Emerg Dis. 2020 Jan;67(1):133-148. doi: 10.1111/tbed.13332. Epub 2019 Aug 29.


Enhancing Recombinant Protein Yields in the E. coli Periplasm by Combining Signal Peptide and Production Rate Screening.

Karyolaimos A, Ampah-Korsah H, Hillenaar T, Mestre Borras A, Dolata KM, Sievers S, Riedel K, Daniels R, de Gier JW.

Front Microbiol. 2019 Jul 23;10:1511. doi: 10.3389/fmicb.2019.01511. eCollection 2019.


Antimicrobial effects of microwave-induced plasma torch (MiniMIP) treatment on Candida albicans biofilms.

Handorf O, Schnabel U, Bösel A, Weihe T, Bekeschus S, Graf AC, Riedel K, Ehlbeck J.

Microb Biotechnol. 2019 Sep;12(5):1034-1048. doi: 10.1111/1751-7915.13459. Epub 2019 Jul 1.


Detailed Soluble Proteome Analyses of a Dairy-Isolated Enterococcus faecalis: A Possible Approach to Assess Food Safety and Potential Probiotic Value.

Cirrincione S, Neumann B, Zühlke D, Riedel K, Pessione E.

Front Nutr. 2019 May 17;6:71. doi: 10.3389/fnut.2019.00071. eCollection 2019.


Estrogen determines sex differences in adrenergic vessel tone by regulation of endothelial β-adrenoceptor expression.

Riedel K, Deussen AJ, Tolkmitt J, Weber S, Schlinkert P, Zatschler B, Friebel C, Müller B, El-Armouche A, Morawietz H, Matschke K, Kopaliani I.

Am J Physiol Heart Circ Physiol. 2019 Aug 1;317(2):H243-H254. doi: 10.1152/ajpheart.00456.2018. Epub 2019 May 31.


Response of Microbial Communities and Their Metabolic Functions to Drying⁻Rewetting Stress in a Temperate Forest Soil.

Liu D, Keiblinger KM, Leitner S, Wegner U, Zimmermann M, Fuchs S, Lassek C, Riedel K, Zechmeister-Boltenstern S.

Microorganisms. 2019 May 13;7(5). pii: E129. doi: 10.3390/microorganisms7050129.


Proteomic analysis of the food spoiler Pseudomonas fluorescens ITEM 17298 reveals the antibiofilm activity of the pepsin-digested bovine lactoferrin.

Quintieri L, Zühlke D, Fanelli F, Caputo L, Liuzzi VC, Logrieco AF, Hirschfeld C, Becher D, Riedel K.

Food Microbiol. 2019 Sep;82:177-193. doi: 10.1016/ Epub 2019 Feb 8.


Virulence Factors Produced by Staphylococcus aureus Biofilms Have a Moonlighting Function Contributing to Biofilm Integrity.

Graf AC, Leonard A, Schäuble M, Rieckmann LM, Hoyer J, Maass S, Lalk M, Becher D, Pané-Farré J, Riedel K.

Mol Cell Proteomics. 2019 Jun;18(6):1036-1053. doi: 10.1074/mcp.RA118.001120. Epub 2019 Mar 8.


Differential View on the Bile Acid Stress Response of Clostridioides difficile.

Sievers S, Metzendorf NG, Dittmann S, Troitzsch D, Gast V, Tröger SM, Wolff C, Zühlke D, Hirschfeld C, Schlüter R, Riedel K.

Front Microbiol. 2019 Feb 18;10:258. doi: 10.3389/fmicb.2019.00258. eCollection 2019.


Session 2: Biofilms/Implant associated infections.

Kohse S, Wulf K, Pauker V, Arbeiter D, Fiedler N, Bajer D, Stiehm M, Eickner T, Riedel K, Schmitz KP, Grabow N.

Biomed Tech (Berl). 2019 Feb 1;64(s1):19-24. doi: 10.1515/bmt-2019-7002. No abstract available.


The catabolism of 3,3'-thiodipropionic acid in Variovorax paradoxus strain TBEA6: A proteomic analysis.

Heine V, Meinert-Berning C, Lück J, Mikowsky N, Voigt B, Riedel K, Steinbüchel A.

PLoS One. 2019 Feb 11;14(2):e0211876. doi: 10.1371/journal.pone.0211876. eCollection 2019.


Comparative proteome analysis in an Escherichia coli CyDisCo strain identifies stress responses related to protein production, oxidative stress and accumulation of misfolded protein.

Guerrero Montero I, Dolata KM, Schlüter R, Malherbe G, Sievers S, Zühlke D, Sura T, Dave E, Riedel K, Robinson C.

Microb Cell Fact. 2019 Jan 29;18(1):19. doi: 10.1186/s12934-019-1071-7.


Effects of adult temperature on gene expression in a butterfly: identifying pathways associated with thermal acclimation.

Franke K, Karl I, Centeno TP, Feldmeyer B, Lassek C, Oostra V, Riedel K, Stanke M, Wheat CW, Fischer K.

BMC Evol Biol. 2019 Jan 23;19(1):32. doi: 10.1186/s12862-019-1362-y.


A Core Genome Multilocus Sequence Typing Scheme for Enterococcus faecalis.

Neumann B, Prior K, Bender JK, Harmsen D, Klare I, Fuchs S, Bethe A, Zühlke D, Göhler A, Schwarz S, Schaffer K, Riedel K, Wieler LH, Werner G.

J Clin Microbiol. 2019 Feb 27;57(3). pii: e01686-18. doi: 10.1128/JCM.01686-18. Print 2019 Mar.


Proteogenomics Uncovers Critical Elements of Host Response in Bovine Soft Palate Epithelial Cells Following In Vitro Infection with Foot-And-Mouth Disease Virus.

Pfaff F, Hägglund S, Zoli M, Blaise-Boisseau S, Laloy E, Koethe S, Zühlke D, Riedel K, Zientara S, Bakkali-Kassimi L, Valarcher JF, Höper D, Beer M, Eschbaumer M.

Viruses. 2019 Jan 12;11(1). pii: E53. doi: 10.3390/v11010053.


Iron Regulation in Clostridioides difficile.

Berges M, Michel AM, Lassek C, Nuss AM, Beckstette M, Dersch P, Riedel K, Sievers S, Becher D, Otto A, Maaß S, Rohde M, Eckweiler D, Borrero-de Acuña JM, Jahn M, Neumann-Schaal M, Jahn D.

Front Microbiol. 2018 Dec 24;9:3183. doi: 10.3389/fmicb.2018.03183. eCollection 2018.


Pathologic Features of Tumor Activity and Stability in Uveal Melanoma Specimens after Fractionated CyberKnife Radiosurgery.

Zimpfer A, Schneider B, Blanck O, Riedel K, Zhivov A, Jonigk D, Erbersdobler A, Jünemann A, Andratschke N, Hildebrandt G, Guthoff RF, Kakkassery V.

Pathol Oncol Res. 2019 Apr;25(2):731-740. doi: 10.1007/s12253-018-00565-1. Epub 2019 Jan 7.


Far-reaching cellular consequences of tat deletion in Escherichia coli revealed by comprehensive proteome analyses.

Dolata KM, Montero IG, Miller W, Sievers S, Sura T, Wolff C, Schlüter R, Riedel K, Robinson C.

Microbiol Res. 2019 Jan;218:97-107. doi: 10.1016/j.micres.2018.10.008. Epub 2018 Nov 1.


Proteomic Signatures of Clostridium difficile Stressed with Metronidazole, Vancomycin, or Fidaxomicin.

Maaß S, Otto A, Albrecht D, Riedel K, Trautwein-Schult A, Becher D.

Cells. 2018 Nov 15;7(11). pii: E213. doi: 10.3390/cells7110213.


Quorum Sensing and Spoilage Potential of Psychrotrophic Enterobacteriaceae Isolated from Milk.

Martins ML, Pinto UM, Riedel K, Vanetti MCD.

Biomed Res Int. 2018 Oct 22;2018:2723157. doi: 10.1155/2018/2723157. eCollection 2018.


Sample Preparation for Metaproteome Analyses of Soil and Leaf Litter.

Keiblinger KM, Riedel K.

Methods Mol Biol. 2018;1841:303-318. doi: 10.1007/978-1-4939-8695-8_21.


Nonthermal Plasma Jet Treatment Negatively Affects the Viability and Structure of Candida albicans SC5314 Biofilms.

Handorf O, Weihe T, Bekeschus S, Graf AC, Schnabel U, Riedel K, Ehlbeck J.

Appl Environ Microbiol. 2018 Oct 17;84(21). pii: e01163-18. doi: 10.1128/AEM.01163-18. Print 2018 Nov 1.


Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation.

Söllinger A, Tveit AT, Poulsen M, Noel SJ, Bengtsson M, Bernhardt J, Frydendahl Hellwing AL, Lund P, Riedel K, Schleper C, Højberg O, Urich T.

mSystems. 2018 Aug 7;3(4). pii: e00038-18. doi: 10.1128/mSystems.00038-18. eCollection 2018 Jul-Aug.


A proteomic analysis of ferulic acid metabolism in Amycolatopsis sp. ATCC 39116.

Meyer F, Netzer J, Meinert C, Voigt B, Riedel K, Steinbüchel A.

Appl Microbiol Biotechnol. 2018 Jul;102(14):6119-6142. doi: 10.1007/s00253-018-9061-y. Epub 2018 May 16.


Discovery of a novel allosteric inhibitor scaffold for polyadenosine-diphosphate-ribose polymerase 14 (PARP14) macrodomain 2.

Moustakim M, Riedel K, Schuller M, Gehring AP, Monteiro OP, Martin SP, Fedorov O, Heer J, Dixon DJ, Elkins JM, Knapp S, Bracher F, Brennan PE.

Bioorg Med Chem. 2018 Jul 15;26(11):2965-2972. doi: 10.1016/j.bmc.2018.03.020. Epub 2018 Mar 12.


Comprehensive Redox Profiling of the Thiol Proteome of Clostridium difficile.

Sievers S, Dittmann S, Jordt T, Otto A, Hochgräfe F, Riedel K.

Mol Cell Proteomics. 2018 May;17(5):1035-1046. doi: 10.1074/mcp.TIR118.000671. Epub 2018 Mar 1.


The hidden lipoproteome of Staphylococcus aureus.

Graf A, Lewis RJ, Fuchs S, Pagels M, Engelmann S, Riedel K, Pané-Farré J.

Int J Med Microbiol. 2018 Aug;308(6):569-581. doi: 10.1016/j.ijmm.2018.01.008. Epub 2018 Feb 1.


Frequent and Yet Unreported GNAQ and GNA11 Mutations are Found in Uveal Melanomas.

Schneider B, Riedel K, Zhivov A, Huehns M, Zettl H, Guthoff RF, Jünemann A, Erbersdobler A, Zimpfer A.

Pathol Oncol Res. 2019 Oct;25(4):1319-1325. doi: 10.1007/s12253-017-0371-7. Epub 2017 Dec 5.


Identification of AHL- and BDSF-Controlled Proteins in Burkholderia cenocepacia by Proteomics.

Liu Y, Pessi G, Riedel K, Eberl L.

Methods Mol Biol. 2018;1673:193-202. doi: 10.1007/978-1-4939-7309-5_15.


Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome.

Maier TV, Lucio M, Lee LH, VerBerkmoes NC, Brislawn CJ, Bernhardt J, Lamendella R, McDermott JE, Bergeron N, Heinzmann SS, Morton JT, González A, Ackermann G, Knight R, Riedel K, Krauss RM, Schmitt-Kopplin P, Jansson JK.

mBio. 2017 Oct 17;8(5). pii: e01343-17. doi: 10.1128/mBio.01343-17.


Discovery of a Selective Allosteric Inhibitor Targeting Macrodomain 2 of Polyadenosine-Diphosphate-Ribose Polymerase 14.

Schuller M, Riedel K, Gibbs-Seymour I, Uth K, Sieg C, Gehring AP, Ahel I, Bracher F, Kessler BM, Elkins JM, Knapp S.

ACS Chem Biol. 2017 Nov 17;12(11):2866-2874. doi: 10.1021/acschembio.7b00445. Epub 2017 Oct 19.


Oligo(cis-1,4-isoprene) aldehyde-oxidizing dehydrogenases of the rubber-degrading bacterium Gordonia polyisoprenivorans VH2.

Vivod R, Oetermann S, Hiessl S, Gutsche S, Remmers N, Meinert C, Voigt B, Riedel K, Steinbüchel A.

Appl Microbiol Biotechnol. 2017 Nov;101(21):7945-7960. doi: 10.1007/s00253-017-8508-x. Epub 2017 Sep 27.


Minimal geological methane emissions during the Younger Dryas-Preboreal abrupt warming event.

Petrenko VV, Smith AM, Schaefer H, Riedel K, Brook E, Baggenstos D, Harth C, Hua Q, Buizert C, Schilt A, Fain X, Mitchell L, Bauska T, Orsi A, Weiss RF, Severinghaus JP.

Nature. 2017 Aug 23;548(7668):443-446. doi: 10.1038/nature23316.


Deciphering functional diversification within the lichen microbiota by meta-omics.

Cernava T, Erlacher A, Aschenbrenner IA, Krug L, Lassek C, Riedel K, Grube M, Berg G.

Microbiome. 2017 Jul 19;5(1):82. doi: 10.1186/s40168-017-0303-5.


Global Burden of Sugar-Related Dental Diseases in 168 Countries and Corresponding Health Care Costs.

Meier T, Deumelandt P, Christen O, Stangl GI, Riedel K, Langer M.

J Dent Res. 2017 Jul;96(8):845-854. doi: 10.1177/0022034517708315. Epub 2017 May 10.


Bacillus pumilus KatX2 confers enhanced hydrogen peroxide resistance to a Bacillus subtilis PkatA::katX2 mutant strain.

Handtke S, Albrecht D, Zühlke D, Otto A, Becher D, Schweder T, Riedel K, Hecker M, Voigt B.

Microb Cell Fact. 2017 Apr 26;16(1):72. doi: 10.1186/s12934-017-0684-y.


Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C.

Schmidt R, Jager V, Zühlke D, Wolff C, Bernhardt J, Cankar K, Beekwilder J, Ijcken WV, Sleutels F, Boer W, Riedel K, Garbeva P.

Sci Rep. 2017 Apr 13;7(1):862. doi: 10.1038/s41598-017-00893-3.


Human cell-based taste perception - a bittersweet job for industry.

Riedel K, Sombroek D, Fiedler B, Siems K, Krohn M.

Nat Prod Rep. 2017 May 10;34(5):484-495. doi: 10.1039/c6np00123h. Review.


Proteomic analysis of organic sulfur compound utilisation in Advenella mimigardefordensis strain DPN7T.

Meinert C, Brandt U, Heine V, Beyert J, Schmidl S, Wübbeler JH, Voigt B, Riedel K, Steinbüchel A.

PLoS One. 2017 Mar 30;12(3):e0174256. doi: 10.1371/journal.pone.0174256. eCollection 2017.


Editorial: Bioactive Compounds from Microbes.

Mazzoli R, Riedel K, Pessione E.

Front Microbiol. 2017 Mar 8;8:392. doi: 10.3389/fmicb.2017.00392. eCollection 2017. No abstract available.


Symbiotic Interplay of Fungi, Algae, and Bacteria within the Lung Lichen Lobaria pulmonaria L. Hoffm. as Assessed by State-of-the-Art Metaproteomics.

Eymann C, Lassek C, Wegner U, Bernhardt J, Fritsch OA, Fuchs S, Otto A, Albrecht D, Schiefelbein U, Cernava T, Aschenbrenner I, Berg G, Grube M, Riedel K.

J Proteome Res. 2017 Jun 2;16(6):2160-2173. doi: 10.1021/acs.jproteome.6b00974. Epub 2017 May 4.


Biotransformation and reduction of estrogenicity of bisphenol A by the biphenyl-degrading Cupriavidus basilensis.

Zühlke MK, Schlüter R, Mikolasch A, Zühlke D, Giersberg M, Schindler H, Henning AK, Frenzel H, Hammer E, Lalk M, Bornscheuer UT, Riedel K, Kunze G, Schauer F.

Appl Microbiol Biotechnol. 2017 May;101(9):3743-3758. doi: 10.1007/s00253-016-8061-z. Epub 2017 Jan 3.


Genome and Proteome Analysis of Rhodococcus erythropolis MI2: Elucidation of the 4,4´-Dithiodibutyric Acid Catabolism.

Khairy H, Meinert C, Wübbeler JH, Poehlein A, Daniel R, Voigt B, Riedel K, Steinbüchel A.

PLoS One. 2016 Dec 15;11(12):e0167539. doi: 10.1371/journal.pone.0167539. eCollection 2016.


Bioinformatic analysis of fold-type III PLP-dependent enzymes discovers multimeric racemases.

Knight AM, Nobili A, van den Bergh T, Genz M, Joosten HJ, Albrecht D, Riedel K, Pavlidis IV, Bornscheuer UT.

Appl Microbiol Biotechnol. 2017 Feb;101(4):1499-1507. doi: 10.1007/s00253-016-7940-7. Epub 2016 Oct 27.


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