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Introducing BAIT (Biofilm Architecture Inference Tool): a software program to evaluate the architecture of oral multi-species biofilms.

Luo TL, Hayashi M, Zsiska M, Circello B, Eisenberg M, Gonzalez-Cabezas C, Foxman B, Marrs CF, Rickard AH.

Microbiology. 2019 May;165(5):527-537. doi: 10.1099/mic.0.000761. Epub 2019 Mar 18.


A Sensitive Thresholding Method for Confocal Laser Scanning Microscope Image Stacks of Microbial Biofilms.

Luo TL, Eisenberg MC, Hayashi MAL, Gonzalez-Cabezas C, Foxman B, Marrs CF, Rickard AH.

Sci Rep. 2018 Aug 29;8(1):13013. doi: 10.1038/s41598-018-31012-5.


Deciphering Endodontic Microbial Communities by Next-generation Sequencing.

Shin JM, Luo T, Lee KH, Guerreiro D, Botero TM, McDonald NJ, Rickard AH.

J Endod. 2018 Jul;44(7):1080-1087. doi: 10.1016/j.joen.2018.04.003. Epub 2018 Jun 1. Review.


Association of Escherichia coli ST131 lineage with risk of urinary tract infection recurrence among young women.

Ismail MD, Ali I, Hatt S, Salzman EA, Cronenwett AW, Marrs CF, Rickard AH, Foxman B.

J Glob Antimicrob Resist. 2018 Jun;13:81-84. doi: 10.1016/j.jgar.2017.12.006. Epub 2017 Dec 16.


ArcR modulates biofilm formation in the dental plaque colonizer Streptococcus gordonii.

Robinson JC, Rostami N, Casement J, Vollmer W, Rickard AH, Jakubovics NS.

Mol Oral Microbiol. 2018 Apr;33(2):143-154. doi: 10.1111/omi.12207. Epub 2018 Jan 25.


Microbial Communities Associated with Primary and Metastatic Head and Neck Squamous Cell Carcinoma - A High Fusobacterial and Low Streptococcal Signature.

Shin JM, Luo T, Kamarajan P, Fenno JC, Rickard AH, Kapila YL.

Sci Rep. 2017 Aug 30;7(1):9934. doi: 10.1038/s41598-017-09786-x.


An in silico evaluation of treatment regimens for recurrent Clostridium difficile infection.

Blanco N, Foxman B, Malani AN, Zhang M, Walk S, Rickard AH, Eisenberg MC.

PLoS One. 2017 Aug 11;12(8):e0182815. doi: 10.1371/journal.pone.0182815. eCollection 2017.


High-purity Nisin Alone or in Combination with Sodium Hypochlorite Is Effective against Planktonic and Biofilm Populations of Enterococcus faecalis.

Kajwadkar R, Shin JM, Lin GH, Fenno JC, Rickard AH, Kapila YL.

J Endod. 2017 Jun;43(6):989-994. doi: 10.1016/j.joen.2017.01.034. Epub 2017 Apr 27.


The effect of inoculum source and fluid shear force on the development of in vitro oral multispecies biofilms.

Fernández CE, Aspiras MB, Dodds MW, González-Cabezas C, Rickard AH.

J Appl Microbiol. 2017 Mar;122(3):796-808. doi: 10.1111/jam.13376.


Metabolomics of Head and Neck Cancer: A Mini-Review.

Shin JM, Kamarajan P, Fenno JC, Rickard AH, Kapila YL.

Front Physiol. 2016 Nov 8;7:526. eCollection 2016. Review.


A Critical Role for Extracellular DNA in Dental Plaque Formation.

Rostami N, Shields RC, Yassin SA, Hawkins AR, Bowen L, Luo TL, Rickard AH, Holliday R, Preshaw PM, Jakubovics NS.

J Dent Res. 2017 Feb;96(2):208-216. doi: 10.1177/0022034516675849. Epub 2016 Oct 23.


Evaluation of the ability of Acinetobacter baumannii to form biofilms on six different biomedical relevant surfaces.

Greene C, Wu J, Rickard AH, Xi C.

Lett Appl Microbiol. 2016 Oct;63(4):233-9. doi: 10.1111/lam.12627. Epub 2016 Aug 28.


High-throughput quantitative method for assessing coaggregation among oral bacterial species.

Levin-Sparenberg E, Shin JM, Hastings EM, Freeland M, Segaloff H, Rickard AH, Foxman B.

Lett Appl Microbiol. 2016 Oct;63(4):274-81. doi: 10.1111/lam.12622. Epub 2016 Aug 26.


Effect of Fluoride-Containing Toothpastes on Enamel Demineralization and Streptococcus mutans Biofilm Architecture.

Fernández CE, Fontana M, Samarian D, Cury JA, Rickard AH, González-Cabezas C.

Caries Res. 2016;50(2):151-8. doi: 10.1159/000444888. Epub 2016 Apr 14.


Inhibition of multispecies biofilms by a fluoride-releasing dental prosthesis copolymer.

Yassin SA, German MJ, Rolland SL, Rickard AH, Jakubovics NS.

J Dent. 2016 May;48:62-70. doi: 10.1016/j.jdent.2016.03.001. Epub 2016 Mar 4.


Biomedical applications of nisin.

Shin JM, Gwak JW, Kamarajan P, Fenno JC, Rickard AH, Kapila YL.

J Appl Microbiol. 2016 Jun;120(6):1449-65. doi: 10.1111/jam.13033. Epub 2016 Feb 12. Review.


Coaggregation occurs between microorganisms isolated from different environments.

Stevens MR, Luo TL, Vornhagen J, Jakubovics NS, Gilsdorf JR, Marrs CF, Møretrø T, Rickard AH.

FEMS Microbiol Ecol. 2015 Nov;91(11). pii: fiv123. doi: 10.1093/femsec/fiv123. Epub 2015 Oct 15.


A Modified Shuttle Plasmid Facilitates Expression of a Flavin Mononucleotide-Based Fluorescent Protein in Treponema denticola ATCC 35405.

Godovikova V, Goetting-Minesky MP, Shin JM, Kapila YL, Rickard AH, Fenno JC.

Appl Environ Microbiol. 2015 Sep;81(18):6496-504. doi: 10.1128/AEM.01541-15. Epub 2015 Jul 10.


Antimicrobial nisin acts against saliva derived multi-species biofilms without cytotoxicity to human oral cells.

Shin JM, Ateia I, Paulus JR, Liu H, Fenno JC, Rickard AH, Kapila YL.

Front Microbiol. 2015 Jun 18;6:617. doi: 10.3389/fmicb.2015.00617. eCollection 2015.


Coaggregation between Rhodococcus and Acinetobacter strains isolated from the food industry.

Møretrø T, Sharifzadeh S, Langsrud S, Heir E, Rickard AH.

Can J Microbiol. 2015 Jul;61(7):503-12. doi: 10.1139/cjm-2015-0210. Epub 2015 May 20.


L-arginine destabilizes oral multi-species biofilm communities developed in human saliva.

Kolderman E, Bettampadi D, Samarian D, Dowd SE, Foxman B, Jakubovics NS, Rickard AH.

PLoS One. 2015 May 6;10(5):e0121835. doi: 10.1371/journal.pone.0121835. eCollection 2015.


Critical roles of arginine in growth and biofilm development by Streptococcus gordonii.

Jakubovics NS, Robinson JC, Samarian DS, Kolderman E, Yassin SA, Bettampadi D, Bashton M, Rickard AH.

Mol Microbiol. 2015 Jul;97(2):281-300. doi: 10.1111/mmi.13023. Epub 2015 May 20.


Association of blaOXA-23 and bap with the persistence of Acinetobacter baumannii within a major healthcare system.

Luo TL, Rickard AH, Srinivasan U, Kaye KS, Foxman B.

Front Microbiol. 2015 Mar 12;6:182. doi: 10.3389/fmicb.2015.00182. eCollection 2015.


Use of a high-throughput in vitro microfluidic system to develop oral multi-species biofilms.

Samarian DS, Jakubovics NS, Luo TL, Rickard AH.

J Vis Exp. 2014 Dec 1;(94). doi: 10.3791/52467.


Mini-review: Microbial coaggregation: ubiquity and implications for biofilm development.

Katharios-Lanwermeyer S, Xi C, Jakubovics NS, Rickard AH.

Biofouling. 2014;30(10):1235-51. doi: 10.1080/08927014.2014.976206. Review.


S-aryl-L-cysteine sulphoxides and related organosulphur compounds alter oral biofilm development and AI-2-based cell-cell communication.

Kasper SH, Samarian D, Jadhav AP, Rickard AH, Musah RA, Cady NC.

J Appl Microbiol. 2014 Nov;117(5):1472-86. doi: 10.1111/jam.12616. Epub 2014 Aug 30.


Community interactions of oral streptococci.

Jakubovics NS, Yassin SA, Rickard AH.

Adv Appl Microbiol. 2014;87:43-110. doi: 10.1016/B978-0-12-800261-2.00002-5. Review.


A high-throughput microfluidic dental plaque biofilm system to visualize and quantify the effect of antimicrobials.

Nance WC, Dowd SE, Samarian D, Chludzinski J, Delli J, Battista J, Rickard AH.

J Antimicrob Chemother. 2013 Nov;68(11):2550-60. doi: 10.1093/jac/dkt211. Epub 2013 Jun 25.


Tannic acid inhibits Staphylococcus aureus surface colonization in an IsaA-dependent manner.

Payne DE, Martin NR, Parzych KR, Rickard AH, Underwood A, Boles BR.

Infect Immun. 2013 Feb;81(2):496-504. doi: 10.1128/IAI.00877-12. Epub 2012 Dec 3.


Coaggregation occurs amongst bacteria within and between biofilms in domestic showerheads.

Vornhagen J, Stevens M, McCormick DW, Dowd SE, Eisenberg JN, Boles BR, Rickard AH.

Biofouling. 2013;29(1):53-68. doi: 10.1080/08927014.2012.744395.


Functional amyloids composed of phenol soluble modulins stabilize Staphylococcus aureus biofilms.

Schwartz K, Syed AK, Stephenson RE, Rickard AH, Boles BR.

PLoS Pathog. 2012;8(6):e1002744. doi: 10.1371/journal.ppat.1002744. Epub 2012 Jun 7.


Autoinducer-2 influences interactions amongst pioneer colonizing streptococci in oral biofilms.

Cuadra-Saenz G, Rao DL, Underwood AJ, Belapure SA, Campagna SR, Sun Z, Tammariello S, Rickard AH.

Microbiology. 2012 Jul;158(Pt 7):1783-95. doi: 10.1099/mic.0.057182-0. Epub 2012 Apr 5.


The importance of a multifaceted approach to characterizing the microbial flora of chronic wounds.

Han A, Zenilman JM, Melendez JH, Shirtliff ME, Agostinho A, James G, Stewart PS, Mongodin EF, Rao D, Rickard AH, Lazarus GS.

Wound Repair Regen. 2011 Sep-Oct;19(5):532-41. doi: 10.1111/j.1524-475X.2011.00720.x.


Efficacy of an alcohol-free CPC-containing mouthwash against oral multispecies biofilms.

Rao D, Arvanitidou E, Du-Thumm L, Rickard AH.

J Clin Dent. 2011;22(6):187-94.


Physicochemical parameters influencing coaggregation between the freshwater bacteria Sphingomonas natatoria 2.1 and Micrococcus luteus 2.13.

Min KR, Zimmer MN, Rickard AH.

Biofouling. 2010 Nov;26(8):931-40. doi: 10.1080/08927014.2010.531128.


Production of cell-cell signalling molecules by bacteria isolated from human chronic wounds.

Rickard AH, Colacino KR, Manton KM, Morton RI, Pulcini E, Pfeil J, Rhoads D, Wolcott RD, James G.

J Appl Microbiol. 2010 May;108(5):1509-22. doi: 10.1111/j.1365-2672.2009.04554.x. Epub 2009 Sep 21.


Coaggregation by the freshwater bacterium Sphingomonas natatoria alters dual-species biofilm formation.

Min KR, Rickard AH.

Appl Environ Microbiol. 2009 Jun;75(12):3987-97. doi: 10.1128/AEM.02843-08. Epub 2009 Apr 17.


Autoinducer-2 is produced in saliva-fed flow conditions relevant to natural oral biofilms.

Rickard AH, Campagna SR, Kolenbrander PE.

J Appl Microbiol. 2008 Dec;105(6):2096-103. doi: 10.1111/j.1365-2672.2008.03910.x.


Bacterial interactions and successions during plaque development.

Kolenbrander PE, Palmer RJ Jr, Rickard AH, Jakubovics NS, Chalmers NI, Diaz PI.

Periodontol 2000. 2006;42:47-79. Review. No abstract available.


Autoinducer 2: a concentration-dependent signal for mutualistic bacterial biofilm growth.

Rickard AH, Palmer RJ Jr, Blehert DS, Campagna SR, Semmelhack MF, Egland PG, Bassler BL, Kolenbrander PE.

Mol Microbiol. 2006 Jun;60(6):1446-56.


Molecular characterization of subject-specific oral microflora during initial colonization of enamel.

Diaz PI, Chalmers NI, Rickard AH, Kong C, Milburn CL, Palmer RJ Jr, Kolenbrander PE.

Appl Environ Microbiol. 2006 Apr;72(4):2837-48.


Adhaeribacter aquaticus gen. nov., sp. nov., a Gram-negative isolate from a potable water biofilm.

Rickard AH, Stead AT, O'May GA, Lindsay S, Banner M, Handley PS, Gilbert P.

Int J Syst Evol Microbiol. 2005 Mar;55(Pt 2):821-9.


Shear rate moderates community diversity in freshwater biofilms.

Rickard AH, McBain AJ, Stead AT, Gilbert P.

Appl Environ Microbiol. 2004 Dec;70(12):7426-35.


Characterization of nutrient-induced dispersion in Pseudomonas aeruginosa PAO1 biofilm.

Sauer K, Cullen MC, Rickard AH, Zeef LA, Davies DG, Gilbert P.

J Bacteriol. 2004 Nov;186(21):7312-26.


Induction of the mar operon by miscellaneous groceries.

Rickard AH, Lindsay S, Lockwood GB, Gilbert P.

J Appl Microbiol. 2004;97(5):1063-8.


Influence of growth environment on coaggregation between freshwater biofilm bacteria.

Rickard AH, Gilbert P, Handley PS.

J Appl Microbiol. 2004;96(6):1367-73.


Coaggregation between freshwater bacteria within biofilm and planktonic communities.

Rickard AH, McBain AJ, Ledder RG, Handley PS, Gilbert P.

FEMS Microbiol Lett. 2003 Mar 14;220(1):133-40.


Bacterial coaggregation: an integral process in the development of multi-species biofilms.

Rickard AH, Gilbert P, High NJ, Kolenbrander PE, Handley PS.

Trends Microbiol. 2003 Feb;11(2):94-100. Review.


Microbial characterization of biofilms in domestic drains and the establishment of stable biofilm microcosms.

McBain AJ, Bartolo RG, Catrenich CE, Charbonneau D, Ledder RG, Rickard AH, Symmons SA, Gilbert P.

Appl Environ Microbiol. 2003 Jan;69(1):177-85.


Possible implications of biocide accumulation in the environment on the prevalence of bacterial antibiotic resistance.

McBain AJ, Rickard AH, Gilbert P.

J Ind Microbiol Biotechnol. 2002 Dec;29(6):326-30. Review.


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