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Items: 29


Arginine Metabolism in Supragingival Oral Biofilms as a Potential Predictor of Caries Risk.

Nascimento MM, Alvarez AJ, Huang X, Hanway S, Perry S, Luce A, Richards VP, Burne RA.

JDR Clin Trans Res. 2019 Jul;4(3):262-270. doi: 10.1177/2380084419834234. Epub 2019 Apr 30.


Spontaneously Arising Streptococcus mutans Variants with Reduced Susceptibility to Chlorhexidine Display Genetic Defects and Diminished Fitness.

Kaspar JR, Godwin MJ, Velsko IM, Richards VP, Burne RA.

Antimicrob Agents Chemother. 2019 Jun 24;63(7). pii: e00161-19. doi: 10.1128/AAC.00161-19. Print 2019 Jul.


Resolving Phylogenetic Relationships for Streptococcus mitis and Streptococcus oralis through Core- and Pan-Genome Analyses.

Velsko IM, Perez MS, Richards VP.

Genome Biol Evol. 2019 Apr 1;11(4):1077-1087. doi: 10.1093/gbe/evz049.


White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability.

Marra NJ, Stanhope MJ, Jue NK, Wang M, Sun Q, Pavinski Bitar P, Richards VP, Komissarov A, Rayko M, Kliver S, Stanhope BJ, Winkler C, O'Brien SJ, Antunes A, Jorgensen S, Shivji MS.

Proc Natl Acad Sci U S A. 2019 Feb 19. pii: 201819778. doi: 10.1073/pnas.1819778116. [Epub ahead of print]


Species Designations Belie Phenotypic and Genotypic Heterogeneity in Oral Streptococci.

Velsko IM, Chakraborty B, Nascimento MM, Burne RA, Richards VP.

mSystems. 2018 Dec 18;3(6). pii: e00158-18. doi: 10.1128/mSystems.00158-18. eCollection 2018 Nov-Dec.


Biology of Oral Streptococci.

Abranches J, Zeng L, Kajfasz JK, Palmer SR, Chakraborty B, Wen ZT, Richards VP, Brady LJ, Lemos JA.

Microbiol Spectr. 2018 Oct;6(5). doi: 10.1128/microbiolspec.GPP3-0042-2018. Review.


Transcriptome-Derived Microsatellites Demonstrate Strong Genetic Differentiation in Pacific White Sharks.

Bernard AM, Richards VP, Stanhope MJ, Shivji MS.

J Hered. 2018 Oct 31;109(7):771-779. doi: 10.1093/jhered/esy045.


Phylogenetic signature of lateral exchange of genes for antibiotic production and resistance among bacteria highlights a pattern of global transmission of pathogens between humans and livestock.

Chen Y, Hammer EE, Richards VP.

Mol Phylogenet Evol. 2018 Aug;125:255-264. doi: 10.1016/j.ympev.2018.03.034. Epub 2018 Apr 6.


RNA-Seq Reveals Enhanced Sugar Metabolism in Streptococcus mutans Co-cultured with Candida albicans within Mixed-Species Biofilms.

He J, Kim D, Zhou X, Ahn SJ, Burne RA, Richards VP, Koo H.

Front Microbiol. 2017 Jun 8;8:1036. doi: 10.3389/fmicb.2017.01036. eCollection 2017.


Microbiomes of Site-Specific Dental Plaques from Children with Different Caries Status.

Richards VP, Alvarez AJ, Luce AR, Bedenbaugh M, Mitchell ML, Burne RA, Nascimento MM.

Infect Immun. 2017 Jul 19;85(8). pii: e00106-17. doi: 10.1128/IAI.00106-17. Print 2017 Aug.


Comparative transcriptomics of elasmobranchs and teleosts highlight important processes in adaptive immunity and regional endothermy.

Marra NJ, Richards VP, Early A, Bogdanowicz SM, Pavinski Bitar PD, Stanhope MJ, Shivji MS.

BMC Genomics. 2017 Jan 30;18(1):87. doi: 10.1186/s12864-016-3411-x.


Blastocystis Mitochondrial Genomes Appear to Show Multiple Independent Gains and Losses of Start and Stop Codons.

Jacob AS, Andersen LO, Bitar PP, Richards VP, Shah S, Stanhope MJ, Stensvold CR, Clark CG.

Genome Biol Evol. 2016 Dec 14;8(11):3340-3350.


Legionella clemsonensis sp. nov.: a green fluorescing Legionella strain from a patient with pneumonia.

Palmer A, Painter J, Hassler H, Richards VP, Bruce T, Morrison S, Brown E, Kozak-Muiznieks NA, Lucas C, McNealy TL.

Microbiol Immunol. 2016 Oct;60(10):694-701. doi: 10.1111/1348-0421.12439.


A Highly Arginolytic Streptococcus Species That Potently Antagonizes Streptococcus mutans.

Huang X, Palmer SR, Ahn SJ, Richards VP, Williams ML, Nascimento MM, Burne RA.

Appl Environ Microbiol. 2016 Jan 29;82(7):2187-201. doi: 10.1128/AEM.03887-15.


Genome based phylogeny and comparative genomic analysis of intra-mammary pathogenic Escherichia coli.

Richards VP, Lefébure T, Pavinski Bitar PD, Dogan B, Simpson KW, Schukken YH, Stanhope MJ.

PLoS One. 2015 Mar 25;10(3):e0119799. doi: 10.1371/journal.pone.0119799. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0133222.


Draft Genome Sequence of an Atypical Strain of Streptococcus pneumoniae Isolated from a Respiratory Infection.

Choi SC, Parker J, Richards VP, Ross K, Jilly B, Chen J.

Genome Announc. 2014 Aug 14;2(4). pii: e00822-14. doi: 10.1128/genomeA.00822-14.


Phylogenomics and the dynamic genome evolution of the genus Streptococcus.

Richards VP, Palmer SR, Pavinski Bitar PD, Qin X, Weinstock GM, Highlander SK, Town CD, Burne RA, Stanhope MJ.

Genome Biol Evol. 2014 Apr;6(4):741-53. doi: 10.1093/gbe/evu048.


Transcriptomic and genomic evidence for Streptococcus agalactiae adaptation to the bovine environment.

Richards VP, Choi SC, Pavinski Bitar PD, Gurjar AA, Stanhope MJ.

BMC Genomics. 2013 Dec 27;14:920. doi: 10.1186/1471-2164-14-920.


Patterns of population structure for inshore bottlenose dolphins along the eastern United States.

Richards VP, Greig TW, Fair PA, McCulloch SD, Politz C, Natoli A, Driscoll CA, Hoelzel AR, David V, Bossart GD, Lopez JV.

J Hered. 2013 Nov-Dec;104(6):765-78. doi: 10.1093/jhered/est070.


Characterization of the heart transcriptome of the white shark (Carcharodon carcharias).

Richards VP, Suzuki H, Stanhope MJ, Shivji MS.

BMC Genomics. 2013 Oct 11;14:697. doi: 10.1186/1471-2164-14-697.


Phenotypic heterogeneity of genomically-diverse isolates of Streptococcus mutans.

Palmer SR, Miller JH, Abranches J, Zeng L, Lefebure T, Richards VP, Lemos JA, Stanhope MJ, Burne RA.

PLoS One. 2013 Apr 16;8(4):e61358. doi: 10.1371/journal.pone.0061358. Print 2013. Erratum in: PLoS One. 2013;8(11). doi:10.1371/annotation/ffff8cd5-b8fa-4d3c-a993-e5169198f1e6.


Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species.

Richards VP, Lefébure T, Pavinski Bitar PD, Stanhope MJ.

Infect Genet Evol. 2013 Mar;14:200-13. doi: 10.1016/j.meegid.2012.12.010. Epub 2012 Dec 29. Erratum in: Infect Genet Evol. 2014 Jan;21:506-7.


Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis.

Richards VP, Zadoks RN, Pavinski Bitar PD, Lefébure T, Lang P, Werner B, Tikofsky L, Moroni P, Stanhope MJ.

BMC Microbiol. 2012 Dec 18;12:293. doi: 10.1186/1471-2180-12-293.


Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans.

Cornejo OE, Lefébure T, Bitar PD, Lang P, Richards VP, Eilertson K, Do T, Beighton D, Zeng L, Ahn SJ, Burne RA, Siepel A, Bustamante CD, Stanhope MJ.

Mol Biol Evol. 2013 Apr;30(4):881-93. doi: 10.1093/molbev/mss278. Epub 2012 Dec 10.


Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae.

Lefébure T, Richards VP, Lang P, Pavinski-Bitar P, Stanhope MJ.

PLoS One. 2012;7(5):e37607. doi: 10.1371/journal.pone.0037607. Epub 2012 May 30.


Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae.

Richards VP, Lang P, Bitar PD, Lefébure T, Schukken YH, Zadoks RN, Stanhope MJ.

Infect Genet Evol. 2011 Aug;11(6):1263-75. doi: 10.1016/j.meegid.2011.04.019. Epub 2011 Apr 22.


Morphometric convergence and molecular divergence: the taxonomic status and evolutionary history of Gymnura crebripunctata and Gymnura marmorata in the eastern Pacific Ocean.

Smith WD, Bizzarro JJ, Richards VP, Nielsen J, Márquez-Flarías F, Shivji MS.

J Fish Biol. 2009 Sep;75(4):761-83. doi: 10.1111/j.1095-8649.2009.02300.x.


Species delineation and evolutionary history of the globally distributed spotted eagle ray (Aetobatus narinari).

Richards VP, Henning M, Witzell W, Shivji MS.

J Hered. 2009 May-Jun;100(3):273-83. doi: 10.1093/jhered/esp005. Epub 2009 Mar 20.


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