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Items: 1 to 50 of 129

1.

Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink.

Rodríguez-Martínez R, Leonard G, Milner DS, Sudek S, Conway M, Moore K, Hudson T, Mahé F, Keeling PJ, Santoro AE, Worden AZ, Richards TA.

ISME J. 2020 Jan 9. doi: 10.1038/s41396-019-0581-y. [Epub ahead of print]

PMID:
31919469
2.

Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists.

Wideman JG, Monier A, Rodríguez-Martínez R, Leonard G, Cook E, Poirier C, Maguire F, Milner DS, Irwin NAT, Moore K, Santoro AE, Keeling PJ, Worden AZ, Richards TA.

Nat Microbiol. 2020 Jan;5(1):154-165. doi: 10.1038/s41564-019-0605-4. Epub 2019 Nov 25.

PMID:
31768028
3.

Intracellular Infection of Diverse Diatoms by an Evolutionary Distinct Relative of the Fungi.

Chambouvet A, Monier A, Maguire F, Itoïz S, Del Campo J, Elies P, Edvardsen B, Eikreim W, Richards TA.

Curr Biol. 2019 Dec 2;29(23):4093-4101.e4. doi: 10.1016/j.cub.2019.09.074. Epub 2019 Nov 14.

4.

Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework.

Del Campo J, Heger TJ, Rodríguez-Martínez R, Worden AZ, Richards TA, Massana R, Keeling PJ.

Front Microbiol. 2019 Oct 23;10:2373. doi: 10.3389/fmicb.2019.02373. eCollection 2019.

5.

Editorial overview: Investigating phenotype evolution in the post-genomic era.

Wideman JG, Richards TA.

Curr Opin Genet Dev. 2019 Oct;58-59:iii-v. doi: 10.1016/j.gde.2019.09.006. Epub 2019 Oct 18. No abstract available.

PMID:
31635920
6.

Single cell ecology.

Richards TA, Massana R, Pagliara S, Hall N.

Philos Trans R Soc Lond B Biol Sci. 2019 Nov 25;374(1786):20190076. doi: 10.1098/rstb.2019.0076. Epub 2019 Oct 7.

7.

A single-cell genome reveals diplonemid-like ancestry of kinetoplastid mitochondrial gene structure.

Wideman JG, Lax G, Leonard G, Milner DS, Rodríguez-Martínez R, Simpson AGB, Richards TA.

Philos Trans R Soc Lond B Biol Sci. 2019 Nov 25;374(1786):20190100. doi: 10.1098/rstb.2019.0100. Epub 2019 Oct 7.

8.

A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.

Needham DM, Yoshizawa S, Hosaka T, Poirier C, Choi CJ, Hehenberger E, Irwin NAT, Wilken S, Yung CM, Bachy C, Kurihara R, Nakajima Y, Kojima K, Kimura-Someya T, Leonard G, Malmstrom RR, Mende DR, Olson DK, Sudo Y, Sudek S, Richards TA, DeLong EF, Keeling PJ, Santoro AE, Shirouzu M, Iwasaki W, Worden AZ.

Proc Natl Acad Sci U S A. 2019 Oct 8;116(41):20574-20583. doi: 10.1073/pnas.1907517116. Epub 2019 Sep 23.

9.

Coral symbiosis is a three-player game.

Richards TA, McCutcheon JP.

Nature. 2019 Apr;568(7750):41-42. doi: 10.1038/d41586-019-00949-6. No abstract available.

PMID:
30944488
10.

Environment-dependent fitness gains can be driven by horizontal gene transfer of transporter-encoding genes.

Milner DS, Attah V, Cook E, Maguire F, Savory FR, Morrison M, Müller CA, Foster PG, Talbot NJ, Leonard G, Richards TA.

Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5613-5622. doi: 10.1073/pnas.1815994116. Epub 2019 Mar 6.

11.

Symbiosis: Wolf Lichens Harbour a Choir of Fungi.

Jenkins B, Richards TA.

Curr Biol. 2019 Feb 4;29(3):R88-R90. doi: 10.1016/j.cub.2018.12.034.

PMID:
30721680
12.

Phylogeny, Evidence for a Cryptic Plastid, and Distribution of Chytriodinium Parasites (Dinophyceae) Infecting Copepods.

Strassert JFH, Hehenberger E, Del Campo J, Okamoto N, Kolisko M, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

J Eukaryot Microbiol. 2019 Jul;66(4):574-581. doi: 10.1111/jeu.12701. Epub 2018 Dec 11.

PMID:
30444565
13.

Osmotrophy.

Richards TA, Talbot NJ.

Curr Biol. 2018 Oct 22;28(20):R1179-R1180. doi: 10.1016/j.cub.2018.07.069.

14.

PDZD8 is not the 'functional ortholog' of Mmm1, it is a paralog.

Wideman JG, Balacco DL, Fieblinger T, Richards TA.

F1000Res. 2018 Jul 16;7:1088. doi: 10.12688/f1000research.15523.1. eCollection 2018.

15.

A Revised Taxonomy of Diplonemids Including the Eupelagonemidae n. fam. and a Type Species, Eupelagonema oceanica n. gen. & sp.

Okamoto N, Gawryluk RMR, Del Campo J, Strassert JFH, Lukeš J, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

J Eukaryot Microbiol. 2019 May;66(3):519-524. doi: 10.1111/jeu.12679. Epub 2018 Aug 29.

PMID:
30080299
16.

Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation.

Guo J, Wilken S, Jimenez V, Choi CJ, Ansong C, Dannebaum R, Sudek L, Milner DS, Bachy C, Reistetter EN, Elrod VA, Klimov D, Purvine SO, Wei CL, Kunde-Ramamoorthy G, Richards TA, Goodenough U, Smith RD, Callister SJ, Worden AZ.

Nat Microbiol. 2018 Jul;3(7):781-790. doi: 10.1038/s41564-018-0178-7. Epub 2018 Jun 25.

PMID:
29946165
17.

Ancestral Function and Diversification of a Horizontally Acquired Oomycete Carboxylic Acid Transporter.

Savory FR, Milner DS, Miles DC, Richards TA.

Mol Biol Evol. 2018 Aug 1;35(8):1887-1900. doi: 10.1093/molbev/msy082.

18.

Evolutionary conservation of a core fungal phosphate homeostasis pathway coupled to development in Blastocladiella emersonii.

Gomes-Vieira AL, Wideman JG, Paes-Vieira L, Gomes SL, Richards TA, Meyer-Fernandes JR.

Fungal Genet Biol. 2018 Jun;115:20-32. doi: 10.1016/j.fgb.2018.04.004. Epub 2018 Apr 5.

19.

Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides.

Leonard G, Labarre A, Milner DS, Monier A, Soanes D, Wideman JG, Maguire F, Stevens S, Sain D, Grau-Bové X, Sebé-Pedrós A, Stajich JE, Paszkiewicz K, Brown MW, Hall N, Wickstead B, Richards TA.

Open Biol. 2018 Jan;8(1). pii: 170184. doi: 10.1098/rsob.170184.

20.

Identifying protist consumers of photosynthetic picoeukaryotes in the surface ocean using stable isotope probing.

Orsi WD, Wilken S, Del Campo J, Heger T, James E, Richards TA, Keeling PJ, Worden AZ, Santoro AE.

Environ Microbiol. 2018 Feb;20(2):815-827. doi: 10.1111/1462-2920.14018. Epub 2018 Jan 2.

PMID:
29215213
21.

Predicted microbial secretomes and their target substrates in marine sediment.

Orsi WD, Richards TA, Francis WR.

Nat Microbiol. 2018 Jan;3(1):32-37. doi: 10.1038/s41564-017-0047-9. Epub 2017 Oct 23.

PMID:
29062087
22.

Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates.

Strassert JFH, Karnkowska A, Hehenberger E, Del Campo J, Kolisko M, Okamoto N, Burki F, Janouškovec J, Poirier C, Leonard G, Hallam SJ, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

ISME J. 2018 Jan;12(1):304-308. doi: 10.1038/ismej.2017.167. Epub 2017 Oct 10.

23.

The Guide to Community Preventive Services and Disability Inclusion.

Hinton CF, Kraus LE, Richards TA, Fox MH, Campbell VA.

Am J Prev Med. 2017 Dec;53(6):898-903. doi: 10.1016/j.amepre.2017.06.025. Epub 2017 Aug 30.

24.

Host-derived viral transporter protein for nitrogen uptake in infected marine phytoplankton.

Monier A, Chambouvet A, Milner DS, Attah V, Terrado R, Lovejoy C, Moreau H, Santoro AE, Derelle É, Richards TA.

Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):E7489-E7498. doi: 10.1073/pnas.1708097114. Epub 2017 Aug 21.

25.

Dynamics of genomic innovation in the unicellular ancestry of animals.

Grau-Bové X, Torruella G, Donachie S, Suga H, Leonard G, Richards TA, Ruiz-Trillo I.

Elife. 2017 Jul 20;6. pii: e26036. doi: 10.7554/eLife.26036.

26.

What Defines the "Kingdom" Fungi?

Richards TA, Leonard G, Wideman JG.

Microbiol Spectr. 2017 Jun;5(3). doi: 10.1128/microbiolspec.FUNK-0044-2017. Review.

PMID:
28643626
27.

Morphological Identification and Single-Cell Genomics of Marine Diplonemids.

Gawryluk RMR, Del Campo J, Okamoto N, Strassert JFH, Lukeš J, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

Curr Biol. 2016 Nov 21;26(22):3053-3059. doi: 10.1016/j.cub.2016.09.013.

28.

A fungal pathogen secretes plant alkalinizing peptides to increase infection.

Masachis S, Segorbe D, Turrà D, Leon-Ruiz M, Fürst U, El Ghalid M, Leonard G, López-Berges MS, Richards TA, Felix G, Di Pietro A.

Nat Microbiol. 2016 Apr 11;1(6):16043. doi: 10.1038/nmicrobiol.2016.43.

PMID:
27572834
29.

Benthic protists: the under-charted majority.

Forster D, Dunthorn M, Mahé F, Dolan JR, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Edvardsen B, Egge E, Eikrem W, Gobet A, Kooistra WH, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Richards TA, Santini S, Sarno D, Siano R, Vaulot D, Wincker P, Zingone A, de Vargas C, Stoeck T.

FEMS Microbiol Ecol. 2016 Aug;92(8). pii: fiw120. doi: 10.1093/femsec/fiw120. Epub 2016 Jun 5.

PMID:
27267932
30.

Text mining, a race against time? An attempt to quantify possible variations in text corpora of medical publications throughout the years.

Wagner M, Vicinus B, Muthra ST, Richards TA, Linder R, Frick VO, Groh A, Rubie C, Weichert F.

Comput Biol Med. 2016 Jun 1;73:173-85. doi: 10.1016/j.compbiomed.2016.03.016. Epub 2016 Apr 20.

PMID:
27208610
31.

Nematopsis temporariae (Gregarinasina, Apicomplexa, Alveolata) is an intracellular infectious agent of tadpole livers.

Chambouvet A, Valigurová A, Pinheiro LM, Richards TA, Jirků M.

Environ Microbiol Rep. 2016 Oct;8(5):675-679. doi: 10.1111/1758-2229.12421. Epub 2016 Jun 2.

PMID:
27119160
32.

A tale of two tardigrades.

Richards TA, Monier A.

Proc Natl Acad Sci U S A. 2016 May 3;113(18):4892-4. doi: 10.1073/pnas.1603862113. Epub 2016 Apr 15. No abstract available.

33.

A role for fungi as parasites in the black box of marine trophic interactions.

Richards TA, Chambouvet A.

Environ Microbiol Rep. 2016 Aug;8(4):429-30. doi: 10.1111/1758-2229.12398. Epub 2016 Apr 28.

PMID:
26971571
34.

Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean.

Orsi WD, Smith JM, Liu S, Liu Z, Sakamoto CM, Wilken S, Poirier C, Richards TA, Keeling PJ, Worden AZ, Santoro AE.

ISME J. 2016 Sep;10(9):2158-73. doi: 10.1038/ismej.2016.20. Epub 2016 Mar 8.

35.

Phylogenetic diversity and biogeography of the Mamiellophyceae lineage of eukaryotic phytoplankton across the oceans.

Monier A, Worden AZ, Richards TA.

Environ Microbiol Rep. 2016 Aug;8(4):461-9. doi: 10.1111/1758-2229.12390. Epub 2016 Jun 3.

PMID:
26929141
36.

Molecular diversity and distribution of marine fungi across 130 European environmental samples.

Richards TA, Leonard G, Mahé F, Del Campo J, Romac S, Jones MD, Maguire F, Dunthorn M, De Vargas C, Massana R, Chambouvet A.

Proc Biol Sci. 2015 Nov 22;282(1819). pii: 20152243. doi: 10.1098/rspb.2015.2243.

37.

Cryptic infection of a broad taxonomic and geographic diversity of tadpoles by Perkinsea protists.

Chambouvet A, Gower DJ, Jirků M, Yabsley MJ, Davis AK, Leonard G, Maguire F, Doherty-Bone TM, Bittencourt-Silva GB, Wilkinson M, Richards TA.

Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):E4743-51. doi: 10.1073/pnas.1500163112. Epub 2015 Aug 10.

38.

A Cyclic GMP-Dependent K+ Channel in the Blastocladiomycete Fungus Blastocladiella emersonii.

Avelar GM, Glaser T, Leonard G, Richards TA, Ulrich H, Gomes SL.

Eukaryot Cell. 2015 Sep;14(9):958-63. doi: 10.1128/EC.00087-15. Epub 2015 Jul 6.

39.

Protistology: How to build a microbial eye.

Richards TA, Gomes SL.

Nature. 2015 Jul 9;523(7559):166-7. doi: 10.1038/nature14630. Epub 2015 Jul 1. No abstract available.

PMID:
26131934
40.

The role of horizontal gene transfer in the evolution of the oomycetes.

Savory F, Leonard G, Richards TA.

PLoS Pathog. 2015 May 28;11(5):e1004805. doi: 10.1371/journal.ppat.1004805. eCollection 2015 May. No abstract available.

41.

Diversity and distribution of unicellular opisthokonts along the European coast analysed using high-throughput sequencing.

Del Campo J, Mallo D, Massana R, de Vargas C, Richards TA, Ruiz-Trillo I.

Environ Microbiol. 2015 Sep;17(9):3195-207. doi: 10.1111/1462-2920.12759. Epub 2015 Feb 14.

42.

The secreted proteins of Achlya hypogyna and Thraustotheca clavata identify the ancestral oomycete secretome and reveal gene acquisitions by horizontal gene transfer.

Misner I, Blouin N, Leonard G, Richards TA, Lane CE.

Genome Biol Evol. 2014 Dec 18;7(1):120-35. doi: 10.1093/gbe/evu276.

43.

Complex patterns of gene fission in the eukaryotic folate biosynthesis pathway.

Maguire F, Henriquez FL, Leonard G, Dacks JB, Brown MW, Richards TA.

Genome Biol Evol. 2014 Sep 23;6(10):2709-20. doi: 10.1093/gbe/evu213.

44.

Horizontal gene transfer in eukaryotic plant pathogens.

Soanes D, Richards TA.

Annu Rev Phytopathol. 2014;52:583-614. doi: 10.1146/annurev-phyto-102313-050127. Review.

PMID:
25090479
45.

MicroRNA target prediction: theory and practice.

Wagner M, Vicinus B, Frick VO, Auchtor M, Rubie C, Jeanmonod P, Richards TA, Linder R, Weichert F.

Mol Genet Genomics. 2014 Dec;289(6):1085-101. doi: 10.1007/s00438-014-0871-z. Epub 2014 Jun 18.

PMID:
24938624
46.

Organelle evolution: a mosaic of 'mitochondrial' functions.

Maguire F, Richards TA.

Curr Biol. 2014 Jun 2;24(11):R518-20. doi: 10.1016/j.cub.2014.03.075. Erratum in: Curr Biol. 2014 Jul 7;24(13):1563.

47.

A rhodopsin-guanylyl cyclase gene fusion functions in visual perception in a fungus.

Avelar GM, Schumacher RI, Zaini PA, Leonard G, Richards TA, Gomes SL.

Curr Biol. 2014 Jun 2;24(11):1234-40. doi: 10.1016/j.cub.2014.04.009. Epub 2014 May 15.

48.

Diverse molecular signatures for ribosomally 'active' Perkinsea in marine sediments.

Chambouvet A, Berney C, Romac S, Audic S, Maguire F, De Vargas C, Richards TA.

BMC Microbiol. 2014 Apr 29;14:110. doi: 10.1186/1471-2180-14-110.

49.

Health implications of human trafficking.

Richards TA.

Nurs Womens Health. 2014 Apr-May;18(2):155-62. doi: 10.1111/1751-486X.12112.

PMID:
24750655
50.

Patterns of rare and abundant marine microbial eukaryotes.

Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra WH, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Stoeck T, Santini S, Siano R, Wincker P, Zingone A, Richards TA, de Vargas C, Massana R.

Curr Biol. 2014 Apr 14;24(8):813-21. doi: 10.1016/j.cub.2014.02.050. Epub 2014 Apr 3.

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