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Items: 1 to 50 of 63

1.

Searching for Sympatric Speciation in the Genomic Era.

Richards EJ, Servedio MR, Martin CH.

Bioessays. 2019 Jul;41(7):e1900047. doi: 10.1002/bies.201900047. Review.

PMID:
31245871
2.

Loss of CRWN Nuclear Proteins Induces Cell Death and Salicylic Acid Defense Signaling.

Choi J, Strickler SR, Richards EJ.

Plant Physiol. 2019 Apr;179(4):1315-1329. doi: 10.1104/pp.18.01020. Epub 2019 Jan 29.

4.

Speciation in sympatry with ongoing secondary gene flow and a potential olfactory trigger in a radiation of Cameroon cichlids.

Poelstra JW, Richards EJ, Martin CH.

Mol Ecol. 2018 Nov;27(21):4270-4288. doi: 10.1111/mec.14784. Epub 2018 Jul 27. Erratum in: Mol Ecol. 2019 Aug;28(15):3627.

PMID:
29972877
5.

Variation Across Mitochondrial Gene Trees Provides Evidence for Systematic Error: How Much Gene Tree Variation Is Biological?

Richards EJ, Brown JM, Barley AJ, Chong RA, Thomson RC.

Syst Biol. 2018 Sep 1;67(5):847-860. doi: 10.1093/sysbio/syy013.

PMID:
29471536
6.

The complex effects of demographic history on the estimation of substitution rate: concatenated gene analysis results in no more than twofold overestimation.

Martin CH, Höhna S, Crawford JE, Turner BJ, Richards EJ, Simons LH.

Proc Biol Sci. 2017 Aug 16;284(1860). pii: 20170537. doi: 10.1098/rspb.2017.0537. No abstract available.

7.

Adaptive introgression from distant Caribbean islands contributed to the diversification of a microendemic adaptive radiation of trophic specialist pupfishes.

Richards EJ, Martin CH.

PLoS Genet. 2017 Aug 10;13(8):e1006919. doi: 10.1371/journal.pgen.1006919. eCollection 2017 Aug.

8.

Cell Biology of the Plant Nucleus.

Meier I, Richards EJ, Evans DE.

Annu Rev Plant Biol. 2017 Apr 28;68:139-172. doi: 10.1146/annurev-arplant-042916-041115. Epub 2017 Feb 22. Review.

PMID:
28226231
9.

Long non-coding RNAs (LncRNA) regulated by transforming growth factor (TGF) β. LncRNA-HIT-MEDIATED TGF-INDUCED EPITHELIAL TO MESENCHYMAL TRANSITION IN MAMMARY EPITHELIA.

Richards EJ, Zhang G, Li ZP, Permuth-Wey J, Challa S, Li Y, Kong W, Dan S, Bui MM, Coppola D, Mao WM, Sellers TA, Cheng JQ.

J Biol Chem. 2016 Oct 21;291(43):22860. No abstract available.

10.

JNK Pathway Activation Modulates Acquired Resistance to EGFR/HER2-Targeted Therapies.

Manole S, Richards EJ, Meyer AS.

Cancer Res. 2016 Sep 15;76(18):5219-28. doi: 10.1158/0008-5472.CAN-16-0123. Epub 2016 Jul 22.

11.

Increased toxin expression in a Clostridium difficile mfd mutant.

Willing SE, Richards EJ, Sempere L, Dale AG, Cutting SM, Fairweather NF.

BMC Microbiol. 2015 Dec 18;15:280. doi: 10.1186/s12866-015-0611-5.

12.

A functional variant in HOXA11-AS, a novel long non-coding RNA, inhibits the oncogenic phenotype of epithelial ovarian cancer.

Richards EJ, Permuth-Wey J, Li Y, Chen YA, Coppola D, Reid BM, Lin HY, Teer JK, Berchuck A, Birrer MJ, Lawrenson K, Monteiro AN, Schildkraut JM, Goode EL, Gayther SA, Sellers TA, Cheng JQ.

Oncotarget. 2015 Oct 27;6(33):34745-57. doi: 10.18632/oncotarget.5784.

13.

Long non-coding RNAs (LncRNA) regulated by transforming growth factor (TGF) β: LncRNA-hit-mediated TGFβ-induced epithelial to mesenchymal transition in mammary epithelia.

Richards EJ, Zhang G, Li ZP, Permuth-Wey J, Challa S, Li Y, Kong W, Dan S, Bui MM, Coppola D, Mao WM, Sellers TA, Cheng JQ.

J Biol Chem. 2015 Mar 13;290(11):6857-67. doi: 10.1074/jbc.M114.610915. Epub 2015 Jan 20. Erratum in: J Biol Chem. 2016 Oct 21;291(43):22860.

14.

Arabidopsis VIM proteins regulate epigenetic silencing by modulating DNA methylation and histone modification in cooperation with MET1.

Kim J, Kim JH, Richards EJ, Chung KM, Woo HR.

Mol Plant. 2014 Sep;7(9):1470-1485. doi: 10.1093/mp/ssu079. Epub 2014 Jul 9.

15.

VIM proteins regulate transcription exclusively through the MET1 cytosine methylation pathway.

Shook MS, Richards EJ.

Epigenetics. 2014 Jul;9(7):980-6. doi: 10.4161/epi.28906. Epub 2014 Apr 24.

16.

Arabidopsis CROWDED NUCLEI (CRWN) proteins are required for nuclear size control and heterochromatin organization.

Wang H, Dittmer TA, Richards EJ.

BMC Plant Biol. 2013 Dec 5;13:200. doi: 10.1186/1471-2229-13-200.

17.

Evaluation of Tyro3 expression, Gas6-mediated Akt phosphorylation, and the impact of anti-Tyro3 antibodies in melanoma cell lines.

Demarest SJ, Gardner J, Vendel MC, Ailor E, Szak S, Huang F, Doern A, Tan X, Yang W, Grueneberg DA, Richards EJ, Endege WO, Harlow E, Koopman LA.

Biochemistry. 2013 May 7;52(18):3102-18. doi: 10.1021/bi301588c. Epub 2013 Apr 24.

PMID:
23570341
18.

Upregulation of miRNA-155 promotes tumour angiogenesis by targeting VHL and is associated with poor prognosis and triple-negative breast cancer.

Kong W, He L, Richards EJ, Challa S, Xu CX, Permuth-Wey J, Lancaster JM, Coppola D, Sellers TA, Djeu JY, Cheng JQ.

Oncogene. 2014 Feb 6;33(6):679-89. doi: 10.1038/onc.2012.636. Epub 2013 Jan 28.

19.

Natural epigenetic variation in plant species: a view from the field.

Richards EJ.

Curr Opin Plant Biol. 2011 Apr;14(2):204-9. doi: 10.1016/j.pbi.2011.03.009. Epub 2011 Apr 7. Review.

PMID:
21478048
20.

The structure, organization and radiation of Sadhu non-long terminal repeat retroelements in Arabidopsis species.

Rangwala SH, Richards EJ.

Mob DNA. 2010 Mar 1;1(1):10. doi: 10.1186/1759-8753-1-10.

21.

Gene duplication and hypermutation of the pathogen Resistance gene SNC1 in the Arabidopsis bal variant.

Yi H, Richards EJ.

Genetics. 2009 Dec;183(4):1227-34. doi: 10.1534/genetics.109.105569. Epub 2009 Sep 21.

22.

Role of LINC proteins in plant nuclear morphology.

Dittmer TA, Richards EJ.

Plant Signal Behav. 2008 Jul;3(7):485-7.

23.

Quantitative epigenetics: DNA sequence variation need not apply.

Richards EJ.

Genes Dev. 2009 Jul 15;23(14):1601-5. doi: 10.1101/gad.1824909.

24.

Natural variation in DNA methylation in ribosomal RNA genes of Arabidopsis thaliana.

Woo HR, Richards EJ.

BMC Plant Biol. 2008 Sep 10;8:92. doi: 10.1186/1471-2229-8-92.

25.

Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis.

Woo HR, Dittmer TA, Richards EJ.

PLoS Genet. 2008 Aug 15;4(8):e1000156. doi: 10.1371/journal.pgen.1000156.

26.

Signaling silence--breaking ground and spreading out.

Woo HR, Richards EJ.

Genes Dev. 2008 Jul 1;22(13):1719-23. doi: 10.1101/gad.1694608.

27.

Phenotypic instability of Arabidopsis alleles affecting a disease Resistance gene cluster.

Yi H, Richards EJ.

BMC Plant Biol. 2008 Apr 14;8:36. doi: 10.1186/1471-2229-8-36.

28.

Population epigenetics.

Richards EJ.

Curr Opin Genet Dev. 2008 Apr;18(2):221-6. doi: 10.1016/j.gde.2008.01.014. Epub 2008 Mar 11. Review.

PMID:
18337082
29.
30.

LITTLE NUCLEI genes affecting nuclear morphology in Arabidopsis thaliana.

Dittmer TA, Stacey NJ, Sugimoto-Shirasu K, Richards EJ.

Plant Cell. 2007 Sep;19(9):2793-803. Epub 2007 Sep 14.

31.

Differential epigenetic regulation within an Arabidopsis retroposon family.

Rangwala SH, Richards EJ.

Genetics. 2007 May;176(1):151-60. Epub 2007 Mar 4.

32.

Genetic and epigenetic dissection of cis regulatory variation.

Zhang X, Richards EJ, Borevitz JO.

Curr Opin Plant Biol. 2007 Apr;10(2):142-8. Epub 2007 Feb 14. Review.

PMID:
17300985
33.

VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization.

Woo HR, Pontes O, Pikaard CS, Richards EJ.

Genes Dev. 2007 Feb 1;21(3):267-77. Epub 2007 Jan 22.

34.

Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposon.

Rangwala SH, Elumalai R, Vanier C, Ozkan H, Galbraith DW, Richards EJ.

PLoS Genet. 2006 Mar;2(3):e36. Epub 2006 Mar 17.

35.
36.

Inherited epigenetic variation--revisiting soft inheritance.

Richards EJ.

Nat Rev Genet. 2006 May;7(5):395-401. Review.

PMID:
16534512
37.

Induced and natural epigenetic variation.

Yi H, Riddle NC, Stokes TL, Woo HR, Richards EJ.

Cold Spring Harb Symp Quant Biol. 2004;69:155-9. Review. No abstract available.

PMID:
16117645
38.
39.

The value-added genome: building and maintaining genomic cytosine methylation landscapes.

Rangwala SH, Richards EJ.

Curr Opin Genet Dev. 2004 Dec;14(6):686-91. Review.

PMID:
15531165
40.

Arabidopsis MET1 cytosine methyltransferase mutants.

Kankel MW, Ramsey DE, Stokes TL, Flowers SK, Haag JR, Jeddeloh JA, Riddle NC, Verbsky ML, Richards EJ.

Genetics. 2003 Mar;163(3):1109-22.

41.

Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.

Pandey R, Müller A, Napoli CA, Selinger DA, Pikaard CS, Richards EJ, Bender J, Mount DW, Jorgensen RA.

Nucleic Acids Res. 2002 Dec 1;30(23):5036-55.

42.

Chromatin methylation: who's on first?

Richards EJ.

Curr Biol. 2002 Oct 15;12(20):R694-5.

43.

The control of natural variation in cytosine methylation in Arabidopsis.

Riddle NC, Richards EJ.

Genetics. 2002 Sep;162(1):355-63.

44.

Induced instability of two Arabidopsis constitutive pathogen-response alleles.

Stokes TL, Richards EJ.

Proc Natl Acad Sci U S A. 2002 May 28;99(11):7792-6.

45.
46.

Epigenetic variation in Arabidopsis disease resistance.

Stokes TL, Kunkel BN, Richards EJ.

Genes Dev. 2002 Jan 15;16(2):171-82.

47.

Chromatin remodeling in plants.

Verbsky ML, Richards EJ.

Curr Opin Plant Biol. 2001 Dec;4(6):494-500. Review.

PMID:
11641064
48.

Mum's the word: MOM and modifiers of transcriptional gene silencing.

Stokes TL, Richards EJ.

Plant Cell. 2000 Jul;12(7):1003-6. No abstract available.

49.

Thiamine repression and pyruvate decarboxylase autoregulation independently control the expression of the Saccharomyces cerevisiae PDC5 gene.

Muller EH, Richards EJ, Norbeck J, Byrne KL, Karlsson KA, Pretorius GH, Meacock PA, Blomberg A, Hohmann S.

FEBS Lett. 1999 Apr 23;449(2-3):245-50.

50.

Maintenance of genomic methylation requires a SWI2/SNF2-like protein.

Jeddeloh JA, Stokes TL, Richards EJ.

Nat Genet. 1999 May;22(1):94-7.

PMID:
10319870

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