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Items: 41

1.

Genome-wide characterization of Arabian Peninsula populations: shedding light on the history of a fundamental bridge between continents.

Fernandes V, Brucato N, Ferreira JC, Pedro N, Cavadas B, Ricaut FX, Alshamali F, Pereira L.

Mol Biol Evol. 2019 Jan 14. doi: 10.1093/molbev/msz005. [Epub ahead of print]

PMID:
30649405
2.

Strong selection during the last millennium for African ancestry in the admixed population of Madagascar.

Pierron D, Heiske M, Razafindrazaka H, Pereda-Loth V, Sanchez J, Alva O, Arachiche A, Boland A, Olaso R, Deleuze JF, Ricaut FX, Rakotoarisoa JA, Radimilahy C, Stoneking M, Letellier T.

Nat Commun. 2018 Mar 2;9(1):932. doi: 10.1038/s41467-018-03342-5.

3.

The Comoros Show the Earliest Austronesian Gene Flow into the Swahili Corridor.

Brucato N, Fernandes V, Mazières S, Kusuma P, Cox MP, Ng'ang'a JW, Omar M, Simeone-Senelle MC, Frassati C, Alshamali F, Fin B, Boland A, Deleuze JF, Stoneking M, Adelaar A, Crowther A, Boivin N, Pereira L, Bailly P, Chiaroni J, Ricaut FX.

Am J Hum Genet. 2018 Jan 4;102(1):58-68. doi: 10.1016/j.ajhg.2017.11.011.

4.

Genomic landscape of human diversity across Madagascar.

Pierron D, Heiske M, Razafindrazaka H, Rakoto I, Rabetokotany N, Ravololomanga B, Rakotozafy LM, Rakotomalala MM, Razafiarivony M, Rasoarifetra B, Raharijesy MA, Razafindralambo L, Ramilisonina, Fanony F, Lejamble S, Thomas O, Mohamed Abdallah A, Rocher C, Arachiche A, Tonaso L, Pereda-Loth V, Schiavinato S, Brucato N, Ricaut FX, Kusuma P, Sudoyo H, Ni S, Boland A, Deleuze JF, Beaujard P, Grange P, Adelaar S, Stoneking M, Rakotoarisoa JA, Radimilahy C, Letellier T.

Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):E6498-E6506. doi: 10.1073/pnas.1704906114. Epub 2017 Jul 17.

5.

Genomic admixture tracks pulses of economic activity over 2,000 years in the Indian Ocean trading network.

Brucato N, Kusuma P, Beaujard P, Sudoyo H, Cox MP, Ricaut FX.

Sci Rep. 2017 Jun 7;7(1):2919. doi: 10.1038/s41598-017-03204-y.

6.

The last sea nomads of the Indonesian archipelago: genomic origins and dispersal.

Kusuma P, Brucato N, Cox MP, Letellier T, Manan A, Nuraini C, Grangé P, Sudoyo H, Ricaut FX.

Eur J Hum Genet. 2017 Aug;25(8):1004-1010. doi: 10.1038/ejhg.2017.88. Epub 2017 May 17.

7.

Selective sweep on human amylase genes postdates the split with Neanderthals.

Inchley CE, Larbey CD, Shwan NA, Pagani L, Saag L, Antão T, Jacobs G, Hudjashov G, Metspalu E, Mitt M, Eichstaedt CA, Malyarchuk B, Derenko M, Wee J, Abdullah S, Ricaut FX, Mormina M, Mägi R, Villems R, Metspalu M, Jones MK, Armour JA, Kivisild T.

Sci Rep. 2016 Nov 17;6:37198. doi: 10.1038/srep37198.

8.

Genomic insights into the peopling of the Southwest Pacific.

Skoglund P, Posth C, Sirak K, Spriggs M, Valentin F, Bedford S, Clark GR, Reepmeyer C, Petchey F, Fernandes D, Fu Q, Harney E, Lipson M, Mallick S, Novak M, Rohland N, Stewardson K, Abdullah S, Cox MP, Friedlaender FR, Friedlaender JS, Kivisild T, Koki G, Kusuma P, Merriwether DA, Ricaut FX, Wee JT, Patterson N, Krause J, Pinhasi R, Reich D.

Nature. 2016 Oct 27;538(7626):510-513. doi: 10.1038/nature19844. Epub 2016 Oct 3.

9.

A genomic history of Aboriginal Australia.

Malaspinas AS, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergström A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH, Macholdt E, Peischl S, Rasmussen S, Schiffels S, Subramanian S, Wright JL, Albrechtsen A, Barbieri C, Dupanloup I, Eriksson A, Margaryan A, Moltke I, Pugach I, Korneliussen TS, Levkivskyi IP, Moreno-Mayar JV, Ni S, Racimo F, Sikora M, Xue Y, Aghakhanian FA, Brucato N, Brunak S, Campos PF, Clark W, Ellingvåg S, Fourmile G, Gerbault P, Injie D, Koki G, Leavesley M, Logan B, Lynch A, Matisoo-Smith EA, McAllister PJ, Mentzer AJ, Metspalu M, Migliano AB, Murgha L, Phipps ME, Pomat W, Reynolds D, Ricaut FX, Siba P, Thomas MG, Wales T, Wall CM, Oppenheimer SJ, Tyler-Smith C, Durbin R, Dortch J, Manica A, Schierup MH, Foley RA, Lahr MM, Bowern C, Wall JD, Mailund T, Stoneking M, Nielsen R, Sandhu MS, Excoffier L, Lambert DM, Willerslev E.

Nature. 2016 Oct 13;538(7624):207-214. doi: 10.1038/nature18299. Epub 2016 Sep 21.

PMID:
27654914
10.

Genomic analyses inform on migration events during the peopling of Eurasia.

Pagani L, Lawson DJ, Jagoda E, Mörseburg A, Eriksson A, Mitt M, Clemente F, Hudjashov G, DeGiorgio M, Saag L, Wall JD, Cardona A, Mägi R, Wilson Sayres MA, Kaewert S, Inchley C, Scheib CL, Järve M, Karmin M, Jacobs GS, Antao T, Iliescu FM, Kushniarevich A, Ayub Q, Tyler-Smith C, Xue Y, Yunusbayev B, Tambets K, Mallick CB, Saag L, Pocheshkhova E, Andriadze G, Muller C, Westaway MC, Lambert DM, Zoraqi G, Turdikulova S, Dalimova D, Sabitov Z, Sultana GNN, Lachance J, Tishkoff S, Momynaliev K, Isakova J, Damba LD, Gubina M, Nymadawa P, Evseeva I, Atramentova L, Utevska O, Ricaut FX, Brucato N, Sudoyo H, Letellier T, Cox MP, Barashkov NA, Skaro V, Mulahasanovic L, Primorac D, Sahakyan H, Mormina M, Eichstaedt CA, Lichman DV, Abdullah S, Chaubey G, Wee JTS, Mihailov E, Karunas A, Litvinov S, Khusainova R, Ekomasova N, Akhmetova V, Khidiyatova I, Marjanović D, Yepiskoposyan L, Behar DM, Balanovska E, Metspalu A, Derenko M, Malyarchuk B, Voevoda M, Fedorova SA, Osipova LP, Lahr MM, Gerbault P, Leavesley M, Migliano AB, Petraglia M, Balanovsky O, Khusnutdinova EK, Metspalu E, Thomas MG, Manica A, Nielsen R, Villems R, Willerslev E, Kivisild T, Metspalu M.

Nature. 2016 Oct 13;538(7624):238-242. doi: 10.1038/nature19792. Epub 2016 Sep 21.

11.

Malagasy Genetic Ancestry Comes from an Historical Malay Trading Post in Southeast Borneo.

Brucato N, Kusuma P, Cox MP, Pierron D, Purnomo GA, Adelaar A, Kivisild T, Letellier T, Sudoyo H, Ricaut FX.

Mol Biol Evol. 2016 Sep;33(9):2396-400. doi: 10.1093/molbev/msw117. Epub 2016 Jul 5.

12.

Multi-layered population structure in Island Southeast Asians.

Mörseburg A, Pagani L, Ricaut FX, Yngvadottir B, Harney E, Castillo C, Hoogervorst T, Antao T, Kusuma P, Brucato N, Cardona A, Pierron D, Letellier T, Wee J, Abdullah S, Metspalu M, Kivisild T.

Eur J Hum Genet. 2016 Nov;24(11):1605-1611. doi: 10.1038/ejhg.2016.60. Epub 2016 Jun 15.

13.

Contrasting Linguistic and Genetic Origins of the Asian Source Populations of Malagasy.

Kusuma P, Brucato N, Cox MP, Pierron D, Razafindrazaka H, Adelaar A, Sudoyo H, Letellier T, Ricaut FX.

Sci Rep. 2016 May 18;6:26066. doi: 10.1038/srep26066.

14.

POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.

Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, Cornejo OE, Moreno-Mayar JV, Korneliussen TS, Pierre T, Rasmussen M, Campos PF, de Barros Damgaard P, Allentoft ME, Lindo J, Metspalu E, Rodríguez-Varela R, Mansilla J, Henrickson C, Seguin-Orlando A, Malmström H, Stafford T Jr, Shringarpure SS, Moreno-Estrada A, Karmin M, Tambets K, Bergström A, Xue Y, Warmuth V, Friend AD, Singarayer J, Valdes P, Balloux F, Leboreiro I, Vera JL, Rangel-Villalobos H, Pettener D, Luiselli D, Davis LG, Heyer E, Zollikofer CPE, Ponce de León MS, Smith CI, Grimes V, Pike KA, Deal M, Fuller BT, Arriaza B, Standen V, Luz MF, Ricaut F, Guidon N, Osipova L, Voevoda MI, Posukh OL, Balanovsky O, Lavryashina M, Bogunov Y, Khusnutdinova E, Gubina M, Balanovska E, Fedorova S, Litvinov S, Malyarchuk B, Derenko M, Mosher MJ, Archer D, Cybulski J, Petzelt B, Mitchell J, Worl R, Norman PJ, Parham P, Kemp BM, Kivisild T, Tyler-Smith C, Sandhu MS, Crawford M, Villems R, Smith DG, Waters MR, Goebel T, Johnson JR, Malhi RS, Jakobsson M, Meltzer DJ, Manica A, Durbin R, Bustamante CD, Song YS, Nielsen R, Willerslev E.

Science. 2015 Aug 21;349(6250):aab3884. doi: 10.1126/science.aab3884. Epub 2015 Jul 21.

15.

Mitochondrial DNA and the Y chromosome suggest the settlement of Madagascar by Indonesian sea nomad populations.

Kusuma P, Cox MP, Pierron D, Razafindrazaka H, Brucato N, Tonasso L, Suryadi HL, Letellier T, Sudoyo H, Ricaut FX.

BMC Genomics. 2015 Mar 17;16:191. doi: 10.1186/s12864-015-1394-7.

16.

A recent bottleneck of Y chromosome diversity coincides with a global change in culture.

Karmin M, Saag L, Vicente M, Wilson Sayres MA, Järve M, Talas UG, Rootsi S, Ilumäe AM, Mägi R, Mitt M, Pagani L, Puurand T, Faltyskova Z, Clemente F, Cardona A, Metspalu E, Sahakyan H, Yunusbayev B, Hudjashov G, DeGiorgio M, Loogväli EL, Eichstaedt C, Eelmets M, Chaubey G, Tambets K, Litvinov S, Mormina M, Xue Y, Ayub Q, Zoraqi G, Korneliussen TS, Akhatova F, Lachance J, Tishkoff S, Momynaliev K, Ricaut FX, Kusuma P, Razafindrazaka H, Pierron D, Cox MP, Sultana GN, Willerslev R, Muller C, Westaway M, Lambert D, Skaro V, Kovačevic L, Turdikulova S, Dalimova D, Khusainova R, Trofimova N, Akhmetova V, Khidiyatova I, Lichman DV, Isakova J, Pocheshkhova E, Sabitov Z, Barashkov NA, Nymadawa P, Mihailov E, Seng JW, Evseeva I, Migliano AB, Abdullah S, Andriadze G, Primorac D, Atramentova L, Utevska O, Yepiskoposyan L, Marjanovic D, Kushniarevich A, Behar DM, Gilissen C, Vissers L, Veltman JA, Balanovska E, Derenko M, Malyarchuk B, Metspalu A, Fedorova S, Eriksson A, Manica A, Mendez FL, Karafet TM, Veeramah KR, Bradman N, Hammer MF, Osipova LP, Balanovsky O, Khusnutdinova EK, Johnsen K, Remm M, Thomas MG, Tyler-Smith C, Underhill PA, Willerslev E, Nielsen R, Metspalu M, Villems R, Kivisild T.

Genome Res. 2015 Apr;25(4):459-66. doi: 10.1101/gr.186684.114. Epub 2015 Mar 13.

17.

Genome-wide evidence of Austronesian-Bantu admixture and cultural reversion in a hunter-gatherer group of Madagascar.

Pierron D, Razafindrazaka H, Pagani L, Ricaut FX, Antao T, Capredon M, Sambo C, Radimilahy C, Rakotoarisoa JA, Blench RM, Letellier T, Kivisild T.

Proc Natl Acad Sci U S A. 2014 Jan 21;111(3):936-41. doi: 10.1073/pnas.1321860111. Epub 2014 Jan 6.

18.

Tracing Arab-Islamic inheritance in Madagascar: study of the Y-chromosome and mitochondrial DNA in the Antemoro.

Capredon M, Brucato N, Tonasso L, Choesmel-Cadamuro V, Ricaut FX, Razafindrazaka H, Rakotondrabe AB, Ratolojanahary MA, Randriamarolaza LP, Champion B, Dugoujon JM.

PLoS One. 2013 Nov 22;8(11):e80932. doi: 10.1371/journal.pone.0080932. eCollection 2013.

19.

Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics.

Ottoni C, Flink LG, Evin A, Geörg C, De Cupere B, Van Neer W, Bartosiewicz L, Linderholm A, Barnett R, Peters J, Decorte R, Waelkens M, Vanderheyden N, Ricaut FX, Cakirlar C, Cevik O, Hoelzel AR, Mashkour M, Karimlu AF, Seno SS, Daujat J, Brock F, Pinhasi R, Hongo H, Perez-Enciso M, Rasmussen M, Frantz L, Megens HJ, Crooijmans R, Groenen M, Arbuckle B, Benecke N, Vidarsdottir US, Burger J, Cucchi T, Dobney K, Larson G.

Mol Biol Evol. 2013 Apr;30(4):824-32. doi: 10.1093/molbev/mss261. Epub 2012 Nov 22.

20.

A small cohort of Island Southeast Asian women founded Madagascar.

Cox MP, Nelson MG, Tumonggor MK, Ricaut FX, Sudoyo H.

Proc Biol Sci. 2012 Jul 22;279(1739):2761-8. doi: 10.1098/rspb.2012.0012. Epub 2012 Mar 21.

21.

Ancient DNA suggests the leading role played by men in the Neolithic dissemination.

Lacan M, Keyser C, Ricaut FX, Brucato N, Tarrús J, Bosch A, Guilaine J, Crubézy E, Ludes B.

Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18255-9. doi: 10.1073/pnas.1113061108. Epub 2011 Oct 31.

22.

An Aboriginal Australian genome reveals separate human dispersals into Asia.

Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgreen S, Metspalu M, Jombart T, Kivisild T, Zhai W, Eriksson A, Manica A, Orlando L, De La Vega FM, Tridico S, Metspalu E, Nielsen K, Ávila-Arcos MC, Moreno-Mayar JV, Muller C, Dortch J, Gilbert MT, Lund O, Wesolowska A, Karmin M, Weinert LA, Wang B, Li J, Tai S, Xiao F, Hanihara T, van Driem G, Jha AR, Ricaut FX, de Knijff P, Migliano AB, Gallego Romero I, Kristiansen K, Lambert DM, Brunak S, Forster P, Brinkmann B, Nehlich O, Bunce M, Richards M, Gupta R, Bustamante CD, Krogh A, Foley RA, Lahr MM, Balloux F, Sicheritz-Pontén T, Villems R, Nielsen R, Wang J, Willerslev E.

Science. 2011 Oct 7;334(6052):94-8. doi: 10.1126/science.1211177. Epub 2011 Sep 22.

23.

Molecular identification of bacteria by total sequence screening: determining the cause of death in ancient human subjects.

Thèves C, Senescau A, Vanin S, Keyser C, Ricaut FX, Alekseev AN, Dabernat H, Ludes B, Fabre R, Crubézy E.

PLoS One. 2011;6(7):e21733. doi: 10.1371/journal.pone.0021733. Epub 2011 Jul 13.

24.

Ancient DNA reveals male diffusion through the Neolithic Mediterranean route.

Lacan M, Keyser C, Ricaut FX, Brucato N, Duranthon F, Guilaine J, Crubézy E, Ludes B.

Proc Natl Acad Sci U S A. 2011 Jun 14;108(24):9788-91. doi: 10.1073/pnas.1100723108. Epub 2011 May 31.

25.

Mitochondrial analysis of a Byzantine population reveals the differential impact of multiple historical events in South Anatolia.

Ottoni C, Ricaut FX, Vanderheyden N, Brucato N, Waelkens M, Decorte R.

Eur J Hum Genet. 2011 May;19(5):571-6. doi: 10.1038/ejhg.2010.230. Epub 2011 Jan 12.

26.

Comparison between morphological and genetic data to estimate biological relationship: the case of the Egyin Gol necropolis (Mongolia).

Ricaut FX, Auriol V, von Cramon-Taubadel N, Keyser C, Murail P, Ludes B, Crubézy E.

Am J Phys Anthropol. 2010 Nov;143(3):355-64. doi: 10.1002/ajpa.21322.

PMID:
20949608
27.

mtDNA variation in the Buryat population of the Barguzin Valley: New insights into the micro-evolutionary history of the Baikal area.

Gibert M, Theves C, Ricaut FX, Dambueva I, Bazarov B, Moral P, Crubezy E, Perrucho M, Felix-Sanchez M, Sevin A.

Ann Hum Biol. 2010 Aug;37(4):501-23. doi: 10.3109/03014460903433828.

PMID:
20105115
28.

Complete mitochondrial DNA sequences provide new insights into the Polynesian motif and the peopling of Madagascar.

Razafindrazaka H, Ricaut FX, Cox MP, Mormina M, Dugoujon JM, Randriamarolaza LP, Guitard E, Tonasso L, Ludes B, Crubézy E.

Eur J Hum Genet. 2010 May;18(5):575-81. doi: 10.1038/ejhg.2009.222. Epub 2009 Dec 23.

29.

A new deep branch of eurasian mtDNA macrohaplogroup M reveals additional complexity regarding the settlement of Madagascar.

Ricaut FX, Razafindrazaka H, Cox MP, Dugoujon JM, Guitard E, Sambo C, Mormina M, Mirazon-Lahr M, Ludes B, Crubézy E.

BMC Genomics. 2009 Dec 14;10:605. doi: 10.1186/1471-2164-10-605.

30.

Cranial discrete traits in a Byzantine population and eastern Mediterranean population movements.

Ricaut FX, Waelkens M.

Hum Biol. 2008 Oct;80(5):535-64. doi: 10.3378/1534-6617-80.5.535.

PMID:
19341322
31.

Mitochondrial DNA variation in Karkar Islanders.

Ricaut FX, Thomas T, Arganini C, Staughton J, Leavesley M, Bellatti M, Foley R, Mirazon Lahr M.

Ann Hum Genet. 2008 May;72(Pt 3):349-67. doi: 10.1111/j.1469-1809.2008.00430.x. Epub 2008 Feb 28.

32.

Ancient mitochondrial DNA from Malaysian hair samples: some indications of Southeast Asian population movements.

Ricaut FX, Bellatti M, Lahr MM.

Am J Hum Biol. 2006 Sep-Oct;18(5):654-67.

PMID:
16917897
33.

Molecular genetic analysis of 400-year-old human remains found in two Yakut burial sites.

Ricaut FX, Kolodesnikov S, Keyser-Tracqui C, Alekseev AN, Crubézy E, Ludes B.

Am J Phys Anthropol. 2006 Jan;129(1):55-63.

PMID:
16229028
34.

STR-genotyping from human medieval tooth and bone samples.

Ricaut FX, Keyser-Tracqui C, Crubézy E, Ludes B.

Forensic Sci Int. 2005 Jun 30;151(1):31-5.

PMID:
15935940
35.

Mitochondrial DNA analysis of horses recovered from a frozen tomb (Berel site, Kazakhstan, 3rd Century BC).

Keyser-Tracqui C, Blandin-Frappin P, Francfort HP, Ricaut FX, Lepetz S, Crubézy E, Samashev Z, Ludes B.

Anim Genet. 2005 Jun;36(3):203-9.

PMID:
15932398
36.

Ancient DNA analysis of human neolithic remains found in northeastern Siberia.

Ricaut FX, Fedoseeva A, Keyser-Tracqui C, Crubézy E, Ludes B.

Am J Phys Anthropol. 2005 Apr;126(4):458-62.

PMID:
15756672
37.

Genetic analysis of a Scytho-Siberian skeleton and its implications for ancient Central Asian migrations.

Ricaut FX, Keyser-Tracqui C, Bourgeois J, Crubézy E, Ludes B.

Hum Biol. 2004 Feb;76(1):109-25. Review.

PMID:
15222683
38.

Genetic analysis and ethnic affinities from two Scytho-Siberian skeletons.

Ricaut FX, Keyser-Tracqui C, Cammaert L, Crubézy E, Ludes B.

Am J Phys Anthropol. 2004 Apr;123(4):351-60.

PMID:
15022363
39.

Testing for kavain in human hair using gas chromatography-tandem mass spectrometry.

Villain M, Cirimele V, Tracqui A, Ricaut FX, Ludes B, Kintz P.

J Chromatogr B Analyt Technol Biomed Life Sci. 2003 Dec 25;798(2):351-4.

PMID:
14643516
40.

Genetic analysis of human remains found in two eighteenth century Yakut graves at At-Dabaan.

Ricaut FX, Kolodesnikov S, Keyser-Tracqui C, Alekseev AN, Crubézy E, Ludes B.

Int J Legal Med. 2004 Feb;118(1):24-31. Epub 2003 Nov 8.

PMID:
14608462
41.

French allele frequencies and haplotypes of nine Y-specific STRs.

Keyser-Tracqui C, Ricaut FX, Blandin P, Ludes B.

J Forensic Sci. 2003 Jan;48(1):242-4. No abstract available.

PMID:
12570246

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