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Items: 31

1.

PulseNet: Entering the Age of Next-Generation Sequencing.

Ribot EM, Freeman M, Hise KB, Gerner-Smidt P.

Foodborne Pathog Dis. 2019 Jul;16(7):451-456. doi: 10.1089/fpd.2019.2634. Epub 2019 Jun 26.

2.

An Overview of PulseNet USA Databases.

Tolar B, Joseph LA, Schroeder MN, Stroika S, Ribot EM, Hise KB, Gerner-Smidt P.

Foodborne Pathog Dis. 2019 Jul;16(7):457-462. doi: 10.1089/fpd.2019.2637. Epub 2019 May 8.

3.

Notes from the Field: Environmental Investigation of a Multistate Salmonellosis Outbreak Linked to Live Backyard Poultry from a Mail-Order Hatchery - Michigan, 2018.

Hardy MC, Robertson SA, Sidge J, Signs K, Stobierski MG, Jones K, Soehnlen M, Stefanovsky L, Hambley A, Brandenburg JM, Martin H, Lauer AC, Fields P, Koski L, Stevenson LM, Pabilonia KL, Nichols MC, Basler CA, Ribot EM, Hise KB.

MMWR Morb Mortal Wkly Rep. 2019 Jan 4;67(5152):1430-1431. doi: 10.15585/mmwr.mm675152a5. No abstract available.

4.
5.

Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli.

Timmons C, Trees E, Ribot EM, Gerner-Smidt P, LaFon P, Im S, Ma LM.

J Microbiol Methods. 2016 Jun;125:70-80. doi: 10.1016/j.mimet.2016.04.005. Epub 2016 Apr 9.

6.

Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7.

Griffing SM, MacCannell DR, Schmidtke AJ, Freeman MM, Hyytiä-Trees E, Gerner-Smidt P, Ribot EM, Bono JL.

PLoS One. 2015 Jul 1;10(7):e0131967. doi: 10.1371/journal.pone.0131967. eCollection 2015.

7.

PFGE for Shiga toxin-producing Escherichia coli O157:H7 (STEC O157) and non-O157 STEC.

Jaros P, Dufour M, Gilpin B, Freeman MM, Ribot EM.

Methods Mol Biol. 2015;1301:171-89. doi: 10.1007/978-1-4939-2599-5_15.

PMID:
25862057
8.

Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes.

Trees E, Strockbine N, Changayil S, Ranganathan S, Zhao K, Weil R, MacCannell D, Sabol A, Schmidtke A, Martin H, Stripling D, Ribot EM, Gerner-Smidt P.

Genome Announc. 2014 Aug 7;2(4). pii: e00718-14. doi: 10.1128/genomeA.00718-14.

9.

Genome Sequence of Salmonella enterica Serotype Tennessee Strain CDC07-0191, Implicated in the 2006-2007 Multistate Food-Borne Outbreak Linked to Peanut Butter in the United States.

Deng X, Salazar JK, Frezet S, Maccannell D, Ribot EM, Fields PI, Fricke WF, Zhang W.

Genome Announc. 2013 May 23;1(3). pii: e00260-13. doi: 10.1128/genomeA.00260-13.

10.

Development and validation of a PulseNet standardized protocol for subtyping isolates of Cronobacter species.

Brengi SP, O'Brien SB, Pichel M, Iversen C, Arduino M, Binsztein N, Jensen B, Pagotto F, Ribot EM, Stephan R, Cernela N, Cooper K, Fanning S.

Foodborne Pathog Dis. 2012 Sep;9(9):861-7. doi: 10.1089/fpd.2012.1161. Epub 2012 Aug 14.

PMID:
22891917
11.

Standardization and international multicenter validation of a PulseNet pulsed-field gel electrophoresis protocol for subtyping Shigella flexneri isolates.

Pichel M, Brengi SP, Cooper KL, Ribot EM, Al-Busaidy S, Araya P, Fernández J, Vaz TI, Kam KM, Morcos M, Nielsen EM, Nadon C, Pimentel G, Pérez-Gutiérrez E, Gerner-Smidt P, Binsztein N; Shigella flexneri PulseNet PFGE Protocol Working Group.

Foodborne Pathog Dis. 2012 May;9(5):418-24. doi: 10.1089/fpd.2011.1067. Epub 2012 Apr 16.

PMID:
22506731
12.

Subtyping Salmonella enterica serovar enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs).

Liu F, Kariyawasam S, Jayarao BM, Barrangou R, Gerner-Smidt P, Ribot EM, Knabel SJ, Dudley EG.

Appl Environ Microbiol. 2011 Jul;77(13):4520-6. doi: 10.1128/AEM.00468-11. Epub 2011 May 13.

13.

Novel virulence gene and clustered regularly interspaced short palindromic repeat (CRISPR) multilocus sequence typing scheme for subtyping of the major serovars of Salmonella enterica subsp. enterica.

Liu F, Barrangou R, Gerner-Smidt P, Ribot EM, Knabel SJ, Dudley EG.

Appl Environ Microbiol. 2011 Mar;77(6):1946-56. doi: 10.1128/AEM.02625-10. Epub 2011 Jan 28.

14.

Re-evaluation, optimization, and multilaboratory validation of the PulseNet-standardized pulsed-field gel electrophoresis protocol for Listeria monocytogenes.

Halpin JL, Garrett NM, Ribot EM, Graves LM, Cooper KL.

Foodborne Pathog Dis. 2010 Mar;7(3):293-8. doi: 10.1089/fpd.2009.0394.

PMID:
19911934
16.

Evaluation and validation of a PulseNet standardized pulsed-field gel electrophoresis protocol for subtyping Vibrio parahaemolyticus: an international multicenter collaborative study.

Kam KM, Luey CK, Parsons MB, Cooper KL, Nair GB, Alam M, Islam MA, Cheung DT, Chu YW, Ramamurthy T, Pazhani GP, Bhattacharya SK, Watanabe H, Terajima J, Arakawa E, Ratchtrachenchai OA, Huttayananont S, Ribot EM, Gerner-Smidt P, Swaminathan B; Vibrio parahaemolyticus PulseNet PFGE Protocol Working Group.

J Clin Microbiol. 2008 Aug;46(8):2766-73. doi: 10.1128/JCM.00424-08. Epub 2008 Jun 25.

17.

PulseNet USA standardized pulsed-field gel electrophoresis protocol for subtyping of Vibrio parahaemolyticus.

Parsons MB, Cooper KL, Kubota KA, Puhr N, Simington S, Calimlim PS, Schoonmaker-Bopp D, Bopp C, Swaminathan B, Gerner-Smidt P, Ribot EM.

Foodborne Pathog Dis. 2007 Fall;4(3):285-92.

PMID:
17883312
18.

Recent developments and future prospects in subtyping of foodborne bacterial pathogens.

Hyytiä-Trees EK, Cooper K, Ribot EM, Gerner-Smidt P.

Future Microbiol. 2007 Apr;2(2):175-85. Review.

PMID:
17661654
19.

Invasive Escherichia coli are a feature of Crohn's disease.

Sasaki M, Sitaraman SV, Babbin BA, Gerner-Smidt P, Ribot EM, Garrett N, Alpern JA, Akyildiz A, Theiss AL, Nusrat A, Klapproth JM.

Lab Invest. 2007 Oct;87(10):1042-54. Epub 2007 Jul 30.

20.

Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms.

Zhang W, Qi W, Albert TJ, Motiwala AS, Alland D, Hyytia-Trees EK, Ribot EM, Fields PI, Whittam TS, Swaminathan B.

Genome Res. 2006 Jun;16(6):757-67. Epub 2006 Apr 10.

21.
22.

Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet.

Ribot EM, Fair MA, Gautom R, Cameron DN, Hunter SB, Swaminathan B, Barrett TJ.

Foodborne Pathog Dis. 2006 Spring;3(1):59-67.

PMID:
16602980
23.

Development and validation of a PulseNet standardized pulsed-field gel electrophoresis protocol for subtyping of Vibrio cholerae.

Cooper KL, Luey CK, Bird M, Terajima J, Nair GB, Kam KM, Arakawa E, Safa A, Cheung DT, Law CP, Watanabe H, Kubota K, Swaminathan B, Ribot EM.

Foodborne Pathog Dis. 2006 Spring;3(1):51-8.

PMID:
16602979
24.

PulseNet USA: a five-year update.

Gerner-Smidt P, Hise K, Kincaid J, Hunter S, Rolando S, Hyytiä-Trees E, Ribot EM, Swaminathan B; Pulsenet Taskforce.

Foodborne Pathog Dis. 2006 Spring;3(1):9-19. Review.

PMID:
16602975
25.

Salmonella enterica serotype Typhimurium DT104 isolated from humans, United States, 1985, 1990, and 1995.

Ribot EM, Wierzba RK, Angulo FJ, Barrett TJ.

Emerg Infect Dis. 2002 Apr;8(4):387-91.

26.

Rapid pulsed-field gel electrophoresis protocol for subtyping of Campylobacter jejuni.

Ribot EM, Fitzgerald C, Kubota K, Swaminathan B, Barrett TJ.

J Clin Microbiol. 2001 May;39(5):1889-94.

27.

Evaluation of pulsed-field gel electrophoresis in epidemiological investigations of meningococcal disease outbreaks caused by Neisseria meningitidis serogroup C.

Popovic T, Schmink S, Rosenstein NA, Ajello GW, Reeves MW, Plikaytis B, Hunter SB, Ribot EM, Boxrud D, Tondella ML, Kim C, Noble C, Mothershed E, Besser J, Perkins BA.

J Clin Microbiol. 2001 Jan;39(1):75-85.

28.

Emergence of domestically acquired ceftriaxone-resistant Salmonella infections associated with AmpC beta-lactamase.

Dunne EF, Fey PD, Kludt P, Reporter R, Mostashari F, Shillam P, Wicklund J, Miller C, Holland B, Stamey K, Barrett TJ, Rasheed JK, Tenover FC, Ribot EM, Angulo FJ.

JAMA. 2000 Dec 27;284(24):3151-6.

PMID:
11135779
29.

Rapid amplification of transposon ends for the isolation, cloning and sequencing of transposon-disrupted chromosomal genes.

Ribot EM, Quinn FD, Bai X, Murtagh JJ Jr.

Biotechniques. 1998 Jan;24(1):16-7, 20, 22. No abstract available.

30.

Identification of genes specifically expressed by Mycobacterium haemophilum in association with human epithelial cells.

Fischer LJ, Quinn FD, Kikuta-Oshima L, Ribot EM, King CH.

Ann N Y Acad Sci. 1996 Oct 25;797:277-9. No abstract available.

PMID:
8993379
31.

Genetic and tissue culture systems for the study of bacterial pathogenesis.

Quinn FD, Birkness KA, Kikuta-Oshima LC, Newman GW, Ribot EM, King CH.

Ann N Y Acad Sci. 1996 Oct 25;797:19-25. Review. No abstract available.

PMID:
8993347

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