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Items: 1 to 50 of 204


High-fat diet exacerbates SIV pathogenesis and accelerates disease progression.

He T, Xu C, Krampe N, Dillon SM, Sette P, Falwell E, Haret-Richter GS, Butterfield T, Dunsmore TL, Jr WMM, Martin KJ, Policicchio BB, Raehtz KD, Penn EP, Tracy RP, Ribeiro RM, Frank DN, Wilson CC, Landay AL, Apetrei C, Pandrea I.

J Clin Invest. 2019 Nov 11. pii: 121208. doi: 10.1172/JCI121208. [Epub ahead of print]


Disentangling the life-spans of hepatitis C virus infected cells and intracellular vRNA replication-complexes during direct acting antiviral therapy.

Cardozo EF, Ji D, Lau G, Schinazi RF, Chen GF, Ribeiro RM, Perelson AS.

J Viral Hepat. 2019 Oct 31. doi: 10.1111/jvh.13229. [Epub ahead of print]


Characterization of the wide band chirp of laser diodes with time-resolved spectroscopy.

Tovar P, Ynóquio LE, Ribeiro RM, von der Weid JP.

Appl Opt. 2019 Sep 1;58(25):6737-6741. doi: 10.1364/AO.58.006737.


Complement C3 Inhibitor Pegcetacoplan for Geographic Atrophy Secondary to Age-Related Macular Degeneration: A Randomized Phase 2 Trial.

Liao DS, Grossi FV, El Mehdi D, Gerber MR, Brown DM, Heier JS, Wykoff CC, Singerman LJ, Abraham P, Grassmann F, Nuernberg P, Weber BHF, Deschatelets P, Kim RY, Chung CY, Ribeiro RM, Hamdani M, Rosenfeld PJ, Boyer DS, Slakter JS, Francois CG.

Ophthalmology. 2019 Jul 16. pii: S0161-6420(18)33132-4. doi: 10.1016/j.ophtha.2019.07.011. [Epub ahead of print]


Modeling the immune response to HIV infection.

Conway JM, Ribeiro RM.

Curr Opin Syst Biol. 2018 Dec;12:61-69. doi: 10.1016/j.coisb.2018.10.006. Epub 2018 Nov 8.


Low doses of ionizing radiation activate endothelial cells and induce angiogenesis in peritumoral tissues.

Gil Marques F, Poli E, Malaquias J, Carvalho T, Portêlo A, Ramires A, Aldeia F, Ribeiro RM, Vitorino E, Diegues I, Costa L, Coutinho J, Pina F, Mareel M, Constantino Rosa Santos S.

Radiother Oncol. 2019 Jul 31. pii: S0167-8140(19)32976-7. doi: 10.1016/j.radonc.2019.06.035. [Epub ahead of print]


Naive and Stem Cell Memory T Cell Subset Recovery Reveals Opposing Reconstitution Patterns in CD4 and CD8 T Cells in Chronic Graft vs. Host Disease.

Soares MV, Azevedo RI, Ferreira IA, Bucar S, Ribeiro AC, Vieira A, Pereira PNG, Ribeiro RM, Ligeiro D, Alho AC, Soares AS, Camacho N, Martins C, Lourenço F, Moreno R, Ritz J, Lacerda JF.

Front Immunol. 2019 Mar 6;10:334. doi: 10.3389/fimmu.2019.00334. eCollection 2019.


Inspiratory muscle training improves autonomic modulation and exercise tolerance in chronic obstructive pulmonary disease subjects: A randomized-controlled trial.

Cutrim ALC, Duarte AAM, Silva-Filho AC, Dias CJ, Urtado CB, Ribeiro RM, Rigatto K, Rodrigues B, Dibai-Filho AV, Mostarda CT.

Respir Physiol Neurobiol. 2019 May;263:31-37. doi: 10.1016/j.resp.2019.03.003. Epub 2019 Mar 7.


Editorial: Integrative Computational Systems Biology Approaches in Immunology and Medicine.

Kaderali L, Theis F, Ganusov VV, Ciupe SM, Mehr R, Ribeiro RM, Hernandez-Vargas EA.

Front Microbiol. 2019 Jan 23;9:3338. doi: 10.3389/fmicb.2018.03338. eCollection 2018. No abstract available.


A Case-control Study of Exercise and Kidney Disease: Hemodialysis and Transplantation.

Silva-Filho A, Azoubel LA, Barroso RF, Carneiro E, Dias-Filho CAA, Ribeiro RM, Garcia AMC, Dias CJ, Rodrigues B, Mostarda CT.

Int J Sports Med. 2019 Mar;40(3):209-217. doi: 10.1055/a-0810-8583. Epub 2019 Jan 31.


An alternative storage method for characterization of the intestinal microbiota through next generation sequencing.

Ribeiro RM, Souza-Basqueira M, Oliveira LC, Salles FC, Pereira NB, Sabino EC.

Rev Inst Med Trop Sao Paulo. 2018 Nov 29;60:e77. doi: 10.1590/S1678-9946201860077.


Molecular Markers Distinguishing T Cell Subtypes With TSDR Strand-Bias Methylation.

Minskaia E, Saraiva BC, Soares MMV, Azevedo RI, Ribeiro RM, Kumar SD, Vieira AIS, Lacerda JF.

Front Immunol. 2018 Nov 5;9:2540. doi: 10.3389/fimmu.2018.02540. eCollection 2018.


Probabilistic control of HIV latency and transactivation by the Tat gene circuit.

Cao Y, Lei X, Ribeiro RM, Perelson AS, Liang J.

Proc Natl Acad Sci U S A. 2018 Dec 4;115(49):12453-12458. doi: 10.1073/pnas.1811195115. Epub 2018 Nov 19.


Neutrophil extracellular trap production contributes to pathogenesis in SIV-infected nonhuman primates.

Sivanandham R, Brocca-Cofano E, Krampe N, Falwell E, Venkatraman SMK, Ribeiro RM, Apetrei C, Pandrea I.

J Clin Invest. 2018 Nov 1;128(11):5178-5183. doi: 10.1172/JCI99420. Epub 2018 Oct 15.


The dynamics of simian immunodeficiency virus after depletion of CD8+ cells.

Cardozo EF, Apetrei C, Pandrea I, Ribeiro RM.

Immunol Rev. 2018 Sep;285(1):26-37. doi: 10.1111/imr.12691. Review.


Introduction to modeling viral infections and immunity.

Perelson AS, Ribeiro RM.

Immunol Rev. 2018 Sep;285(1):5-8. doi: 10.1111/imr.12700. No abstract available.


The GO-DACT protocol: a multicentre, randomized, double-blind, parallel-group study to compare the efficacy of golimumab in combination with methotrexate (MTX) versus MTX monotherapy.

Vieira-Sousa E, Canhão H, Alves P, Rodrigues AM, Teixeira F, Tavares-Costa J, Bernardo A, Pimenta S, Pimentel-Santos F, Gomes JL, Aguiar R, Videira T, Pinto P, Catita C, Santos H, Borges J, Sequeira G, Ribeiro C, Teixeira L, Ávila-Ribeiro P, Martins FM, Ribeiro RM, Fonseca JE.

Acta Reumatol Port. 2018 Apr-Jun;43(2):80-92.


Noise Is Not Error: Detecting Parametric Heterogeneity Between Epidemiologic Time Series.

Romero-Severson EO, Ribeiro RM, Castro M.

Front Microbiol. 2018 Jul 12;9:1529. doi: 10.3389/fmicb.2018.01529. eCollection 2018.


Superinfection and cure of infected cells as mechanisms for hepatitis C virus adaptation and persistence.

Ke R, Li H, Wang S, Ding W, Ribeiro RM, Giorgi EE, Bhattacharya T, Barnard RJO, Hahn BH, Shaw GM, Perelson AS.

Proc Natl Acad Sci U S A. 2018 Jul 24;115(30):E7139-E7148. doi: 10.1073/pnas.1805267115. Epub 2018 Jul 9.


Correlation Between Anti-gp41 Antibodies and Virus Infectivity Decay During Primary HIV-1 Infection.

Vaidya NK, Ribeiro RM, Liu P, Haynes BF, Tomaras GD, Perelson AS.

Front Microbiol. 2018 Jun 20;9:1326. doi: 10.3389/fmicb.2018.01326. eCollection 2018.


Lopinavir/ritonavir treatment increases the placental transfer of bupivacaine enantiomers in human immunodeficiency virus-infected pregnant women.

Ribeiro RMP, Moreira FL, Moisés ECD, Cavalli RC, Quintana SM, Lanchote VL, Duarte G.

Br J Clin Pharmacol. 2018 Oct;84(10):2415-2421. doi: 10.1111/bcp.13700. Epub 2018 Aug 2.


Autophagy and Its Interaction With Intracellular Bacterial Pathogens.

Siqueira MDS, Ribeiro RM, Travassos LH.

Front Immunol. 2018 May 23;9:935. doi: 10.3389/fimmu.2018.00935. eCollection 2018. Review.


Special Issue "Mathematical Modeling of Viral Infections".

Murray JM, Ribeiro RM.

Viruses. 2018 Jun 4;10(6). pii: E303. doi: 10.3390/v10060303.


Dynamics of Simian Immunodeficiency Virus Two-Long-Terminal-Repeat Circles in the Presence and Absence of CD8+ Cells.

Policicchio BB, Cardozo EF, Sette P, Xu C, Haret-Richter G, Dunsmore T, Apetrei C, Pandrea I, Ribeiro RM.

J Virol. 2018 Jun 13;92(13). pii: e02100-17. doi: 10.1128/JVI.02100-17. Print 2018 Jul 1.


Emergence of resistance mutations in simian immunodeficiency virus (SIV)-infected rhesus macaques receiving non-suppressive antiretroviral therapy (ART).

Policicchio BB, Sette P, Xu C, Haret-Richter G, Dunsmore T, Pandrea I, Ribeiro RM, Apetrei C.

PLoS One. 2018 Feb 21;13(2):e0190908. doi: 10.1371/journal.pone.0190908. eCollection 2018.


Practical splicing of poly-methyl-methacrylate plastic optical fibers.

Zanon MC, Silva VNH, Barbero APL, Ribeiro RM.

Appl Opt. 2018 Feb 1;57(4):812-816. doi: 10.1364/AO.57.000812.


Adsorption of H2, O2, H2O, OH and H on monolayer MoS2.

Ferreira F, Carvalho A, Moura ÍJM, Coutinho J, Ribeiro RM.

J Phys Condens Matter. 2018 Jan 24;30(3):035003. doi: 10.1088/1361-648X/aaa03f. Epub 2017 Dec 19.



Ribeiro RM, Souza-Santos D.

Radiat Prot Dosimetry. 2018 Aug 1;180(1-4):395-398. doi: 10.1093/rpd/ncx286.


The Role of Infected Cell Proliferation in the Clearance of Acute HBV Infection in Humans.

Goyal A, Ribeiro RM, Perelson AS.

Viruses. 2017 Nov 18;9(11). pii: E350. doi: 10.3390/v9110350.


Behavioral, climatic, and environmental risk factors for Zika and Chikungunya virus infections in Rio de Janeiro, Brazil, 2015-16.

Fuller TL, Calvet G, Genaro Estevam C, Rafael Angelo J, Abiodun GJ, Halai UA, De Santis B, Carvalho Sequeira P, Machado Araujo E, Alves Sampaio S, Lima de Mendonça MC, Fabri A, Ribeiro RM, Harrigan R, Smith TB, Raja Gabaglia C, Brasil P, Bispo de Filippis AM, Nielsen-Saines K.

PLoS One. 2017 Nov 16;12(11):e0188002. doi: 10.1371/journal.pone.0188002. eCollection 2017.


Inflammatory monocytes expressing tissue factor drive SIV and HIV coagulopathy.

Schechter ME, Andrade BB, He T, Richter GH, Tosh KW, Policicchio BB, Singh A, Raehtz KD, Sheikh V, Ma D, Brocca-Cofano E, Apetrei C, Tracy R, Ribeiro RM, Sher A, Francischetti IMB, Pandrea I, Sereti I.

Sci Transl Med. 2017 Aug 30;9(405). pii: eaam5441. doi: 10.1126/scitranslmed.aam5441.


Treatment with integrase inhibitor suggests a new interpretation of HIV RNA decay curves that reveals a subset of cells with slow integration.

Cardozo EF, Andrade A, Mellors JW, Kuritzkes DR, Perelson AS, Ribeiro RM.

PLoS Pathog. 2017 Jul 5;13(7):e1006478. doi: 10.1371/journal.ppat.1006478. eCollection 2017 Jul.


Chenopodium ambrosioides as a bone graft substitute in rabbits radius fracture.

Pinheiro Neto VF, Ribeiro RM, Morais CS, Campos MB, Vieira DA, Guerra PC, Abreu-Silva AL, Silva Junior JR, Nascimento FRF, Borges MOR, Borges ACR.

BMC Complement Altern Med. 2017 Jul 4;17(1):350. doi: 10.1186/s12906-017-1862-5. No abstract available.


The maths of memory.

Borghans J, Ribeiro RM.

Elife. 2017 Apr 28;6. pii: e26754. doi: 10.7554/eLife.26754.


HIV persistence in tissue macrophages of humanized myeloid-only mice during antiretroviral therapy.

Honeycutt JB, Thayer WO, Baker CE, Ribeiro RM, Lada SM, Cao Y, Cleary RA, Hudgens MG, Richman DD, Garcia JV.

Nat Med. 2017 May;23(5):638-643. doi: 10.1038/nm.4319. Epub 2017 Apr 17.


Tuberculosis drug resistance in Southern Mozambique: results of a population-level survey in the district of Manhiça.

Valencia S, Respeito D, Blanco S, Ribeiro RM, López-Varela E, Sequera VG, Saavedra B, Mambuque E, Morillo MG, Bulo H, Cobelens F, Macete E, Alonso PL, Caminero JA, García-Basteiro AL.

Int J Tuberc Lung Dis. 2017 Apr 1;21(4):446-451. doi: 10.5588/ijtld.16.0694.


Knowledge, attitudes and practices regarding tuberculosis care among health workers in Southern Mozambique.

Noé A, Ribeiro RM, Anselmo R, Maixenchs M, Sitole L, Munguambe K, Blanco S, le Souef P, García-Basteiro AL.

BMC Pulm Med. 2017 Jan 5;17(1):2. doi: 10.1186/s12890-016-0344-8.


Genetic variability affecting Exserohilum turcicum resistance in popcorn lines grown under high and low phosphorus conditions.

Amaral AT Jr, Ribeiro RM, Santos PH, Poltronieri TP, Vivas JM, Gerhardt IF, Carvalho BM, Freitas CS, Miranda SB.

Genet Mol Res. 2016 Dec 19;15(4). doi: 10.4238/gmr15049399.


Germline mutations in BRCA1 and BRCA2 in epithelial ovarian cancer patients in Brazil.

Maistro S, Teixeira N, Encinas G, Katayama ML, Niewiadonski VD, Cabral LG, Ribeiro RM, Gaburo Junior N, de Gouvêa AC, Carraro DM, Sabino EC, Diz MD, Chammas R, de Bock GH, Folgueira MA.

BMC Cancer. 2016 Dec 3;16(1):934.


Modeling the Effects of Morphine on Simian Immunodeficiency Virus Dynamics.

Vaidya NK, Ribeiro RM, Perelson AS, Kumar A.

PLoS Comput Biol. 2016 Sep 26;12(9):e1005127. doi: 10.1371/journal.pcbi.1005127. eCollection 2016 Sep.


Multi-dose Romidepsin Reactivates Replication Competent SIV in Post-antiretroviral Rhesus Macaque Controllers.

Policicchio BB, Xu C, Brocca-Cofano E, Raehtz KD, He T, Ma D, Li H, Sivanandham R, Haret-Richter GS, Dunsmore T, Trichel A, Mellors JW, Hahn BH, Shaw GM, Ribeiro RM, Pandrea I, Apetrei C.

PLoS Pathog. 2016 Sep 15;12(9):e1005879. doi: 10.1371/journal.ppat.1005879. eCollection 2016 Sep.


Resistance-associated variants in HCV subtypes 1a and 1b detected by Ion Torrent sequencing platform.

Gaspareto KV, Ribeiro RM, de Mello Malta F, Gomes-Gouvêa MS, Muto NH, Romano CM, Mendes-Correa MC, Carrilho FJ, Sabino EC, Rebello Pinho JR.

Antivir Ther. 2016;21(8):653-660. doi: 10.3851/IMP3057. Epub 2016 Jun 17.


Trypanosoma brucei Parasites Occupy and Functionally Adapt to the Adipose Tissue in Mice.

Trindade S, Rijo-Ferreira F, Carvalho T, Pinto-Neves D, Guegan F, Aresta-Branco F, Bento F, Young SA, Pinto A, Van Den Abbeele J, Ribeiro RM, Dias S, Smith TK, Figueiredo LM.

Cell Host Microbe. 2016 Jun 8;19(6):837-48. doi: 10.1016/j.chom.2016.05.002. Epub 2016 May 26.


HCV inter-subtype 1a/1b recombinant detected by complete-genome next-generation sequencing.

Gaspareto KV, Ribeiro RM, de Mello Malta F, Gomes-Gouvêa MS, Muto NH, Mendes-Correa MC, Rozanski A, Carrilho FJ, Sabino EC, Pinho JR.

Arch Virol. 2016 Aug;161(8):2161-8. doi: 10.1007/s00705-016-2889-5. Epub 2016 May 18.


Cloning, Characterization, and Expression Levels of the Nectin Gene from the Tube Feet of the Sea Urchin Paracentrotus Lividus.

Toubarro D, Gouveia A, Ribeiro RM, Simões N, da Costa G, Cordeiro C, Santos R.

Mar Biotechnol (NY). 2016 Jun;18(3):372-83. doi: 10.1007/s10126-016-9698-4. Epub 2016 May 19.


Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive.

Lebesgue N, da Costa G, Ribeiro RM, Ribeiro-Silva C, Martins GG, Matranga V, Scholten A, Cordeiro C, Heck AJ, Santos R.

Data Brief. 2016 Apr 22;7:1497-505. doi: 10.1016/j.dib.2016.04.002. eCollection 2016 Jun.


Inference of genetic diversity in popcorn S3 progenies.

Pena GF, do Amaral AT Jr, Ribeiro RM, Ramos HC, Boechat MS, Santos JS, Mafra GS, Kamphorst SH, de Lima VJ, Vivas M, de Souza Filho GA.

Genet Mol Res. 2016 May 9;15(2). doi: 10.4238/gmr.15028456.


Estimating biologically relevant parameters under uncertainty for experimental within-host murine West Nile virus infection.

Banerjee S, Guedj J, Ribeiro RM, Moses M, Perelson AS.

J R Soc Interface. 2016 Apr;13(117). pii: 20160130. doi: 10.1098/rsif.2016.0130. Epub 2016 Apr 13.


Mathematics in modern immunology.

Castro M, Lythe G, Molina-París C, Ribeiro RM.

Interface Focus. 2016 Apr 6;6(2):20150093. doi: 10.1098/rsfs.2015.0093. Review.


Deciphering the molecular mechanisms underlying sea urchin reversible adhesion: A quantitative proteomics approach.

Lebesgue N, da Costa G, Ribeiro RM, Ribeiro-Silva C, Martins GG, Matranga V, Scholten A, Cordeiro C, Heck AJ, Santos R.

J Proteomics. 2016 Apr 14;138:61-71. doi: 10.1016/j.jprot.2016.02.026. Epub 2016 Feb 27.


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